HHSEARCH alignment of GI: 254780406 and SCOP domain: d1v9fa_

Alignment
>d1v9fa_ d.265.1.3 (A:) Ribosomal large subunit pseudouridine synthase D, RluD {Escherichia coli [TaxId: 562]}
Probab=99.73  E-value=3.8e-19  Score=137.52  Aligned_cols=152  Identities=17%  Similarity=0.135  Sum_probs=109.0

Q ss_pred             CCCCEEEEECCCCCEEEECCCCCCCCCCCCEEECCC------CCCEECCCCCCCCCCCEEEECCCCCCCCCCCC--CCCC
Q ss_conf             556438960278751563144333364421011023------43200266554332320222367641000123--4457
Q gi|254780406|r   69 KAERTRLWLYHKPIGLVTTHSDPDGRSTVFDNLPSI------FSRVISVGRLDINTEGLLLLTNDGGLARVLEL--PSTQ  140 (354)
Q Consensus        69 ~~~~~~~~~~~KP~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~vgRLD~~t~GLlllTndg~l~~~l~~--p~~~  140 (354)
                      .+++..++++|||.|+.|+........++.+.+...      ...+.+|+|||++|||||||+.+...+..|..  ....
T Consensus        11 lyeD~~~ivvnKP~gl~~hp~~~~~~~t~~~~l~~~~~~~~~~~~~~~vHRLDr~TSGlll~Ak~~~a~~~l~~~f~~~~   90 (250)
T d1v9fa_          11 VYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRRE   90 (250)
T ss_dssp             EEECSSEEEEEECSSCCSSCBTTBSSSSHHHHHHHHCGGGGGSGGGGBCCCCCTTCEEEEEEESSHHHHHHHHHHHHTTC
T ss_pred             EEECCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCEEEEECCCHHHHHHHHHHCCCE
T ss_conf             99789999999999987807999998459999999736504887425775148887651788515278886323304545


Q ss_pred             CEEEEEEEECCCCCHHHHHHHH---------HHHHCCCEEEECCCEEEEECCCCEEEEEEEEEECCHHHHHHHHHHCCCE
Q ss_conf             4047752112455646788874---------0000087675034303640268807999999518428999999983986
Q gi|254780406|r  141 WLRVYRVRFHGQVDQDKLNLLK---------KGIVIQGICYGDMQVTLDTQKGSNAWVTVGLREGKNREIKKVFEFFNWK  211 (354)
Q Consensus       141 ~~k~Y~v~v~~~~~~~~~~~~~---------~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~eGr~~qIrr~~~~~g~~  211 (354)
                      |.|+|++.+.+.+..+.....-         .-....++......+.+.......+++++.+.+||.||||.+|+++|++
T Consensus        91 v~K~Y~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~a~T~~~~l~~~~~~slv~~~~~TGR~HQIRvHla~lG~P  170 (250)
T d1v9fa_          91 ITREYEAVAIGHMTAGGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHP  170 (250)
T ss_dssp             SEEEEEEEEESCCCCCEEEECCEEECSSCTTCEEECTTSBCCEEEEEEEEECSSEEEEEEEESCCCTTHHHHHHHHTTCC
T ss_pred             EEEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEECCCCEECCCCCHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHCCC
T ss_conf             76774432113546456623553357766630687789834441011344056742688786366327999999985983


Q ss_pred             EEEEEEEEECC
Q ss_conf             86889758705
Q gi|254780406|r  212 VNRLIRISYGP  222 (354)
Q Consensus       212 V~~L~Rv~~G~  222 (354)
                      |+.  -..||.
T Consensus       171 IlG--D~~YG~  179 (250)
T d1v9fa_         171 LVG--DPVYGG  179 (250)
T ss_dssp             BTT--CTTTTC
T ss_pred             CCE--ECCCCC
T ss_conf             001--115762


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Pseudouridine synthase
superfamily: Pseudouridine synthase
family: Pseudouridine synthase RsuA/RluD
domain: Ribosomal large subunit pseudouridine synthase D, RluD
species: Escherichia coli [TaxId: 562]