HHSEARCH alignment of GI: 254780406 and SCOP domain: d1vioa1

Alignment
>d1vioa1 d.265.1.3 (A:58-231) Ribosomal small subunit pseudouridine 516 synthase RsuA {Haemophilus influenzae [TaxId: 727]}
Probab=100.00  E-value=1.7e-43  Score=290.90  Aligned_cols=172  Identities=24%  Similarity=0.401  Sum_probs=151.2

Q ss_pred             CCEEEEECCCCCEEEECCCCCCCCCCCCEEECCC-CCCEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCEEEEEEEE
Q ss_conf             6438960278751563144333364421011023-432002665543323202223676410001234457404775211
Q gi|254780406|r   71 ERTRLWLYHKPIGLVTTHSDPDGRSTVFDNLPSI-FSRVISVGRLDINTEGLLLLTNDGGLARVLELPSTQWLRVYRVRF  149 (354)
Q Consensus        71 ~~~~~~~~~KP~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~vgRLD~~t~GLlllTndg~l~~~l~~p~~~~~k~Y~v~v  149 (354)
                      |+..||++|||+|++|+..+. .++++++++... ..++++|||||++||||||||||+++++++++|.+.++++|.|++
T Consensus         1 e~~~Yi~lNKP~G~~~~~~~~-~~~~v~~~l~~~~~~~l~~V~RLD~~TsGLll~t~d~~~~~~l~~~~~~~~k~y~v~v   79 (174)
T d1vioa1           1 EEGQYFMLNKPQGCVCSNDDG-DYPTIYQFFDYPLAGKLHSAGRLDVDTTGLVLLTDDGQWSHRITSPKHHCEKTYLVTL   79 (174)
T ss_dssp             CCCCEEEEEECTTCBSSCCC---CCBGGGGSCTTGGGGCEESSCCCTTCEEEEEEESCHHHHHHHHCTTSCCCEEEEEEE
T ss_pred             CCCEEEEEECCCCEEECCCCC-CCCCHHHHCCCCCCCCEEEEECCCHHHHCEEEEEECCCCCCCCCCCCCCEEEEEEEEE
T ss_conf             998899999999989377898-9983788586522485678852894470349996134101122233211014643687


Q ss_pred             CCCCCHHHHHHHHHHHHCCCEEEECCCEEEEECCCCEEEEEEEEEECCHHHHHHHHHHCCCEEEEEEEEEECCEECC-CC
Q ss_conf             24556467888740000087675034303640268807999999518428999999983986868897587054518-75
Q gi|254780406|r  150 HGQVDQDKLNLLKKGIVIQGICYGDMQVTLDTQKGSNAWVTVGLREGKNREIKKVFEFFNWKVNRLIRISYGPFQLG-TL  228 (354)
Q Consensus       150 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~eGr~~qIrr~~~~~g~~V~~L~Rv~~G~~~l~-~L  228 (354)
                      .++++++.+..+..++.+++.........+..  ...+|++|+|.|||+||||+||+++|++|.+|+||+||+++|+ +|
T Consensus        80 ~~~~~~~~~~~l~~~v~~~g~~~~~~~~~~~~--~~~~~~~i~l~tGR~hQIR~~~~~~g~pI~~L~Ri~~g~~~L~~~L  157 (174)
T d1vioa1          80 ADPVEENYSAACAEGILLRGEKEPTKPAKLEI--LDDYNVNLTISEGRYHQVKRMFAALGNKVVGLHRWKIGDVVLDESL  157 (174)
T ss_dssp             SSCCCTTHHHHHHHCCCCTTCSSCCCCCEEEE--CSSSEEEEEESCCCTTHHHHHHHHTTCCEEEEEEEEETTEECCTTC
T ss_pred             ECCCCHHHHHHHHCCCEECCCCCCCEEEEECC--CCCCEEEEEEECCCCHHHHHHHHHCCCEEEEEEEEEECCCCCCCCC
T ss_conf             12531125789867935068501315531002--5684799998036465899999874978979999998565269989


Q ss_pred             CCCCEEECCHHHHHHHH
Q ss_conf             54748867999998753
Q gi|254780406|r  229 LAGSTREVSKKILREQL  245 (354)
Q Consensus       229 ~~G~~r~l~~~e~~~l~  245 (354)
                      ++|+||+|++.|+..|+
T Consensus       158 ~~G~~r~l~~~Ei~~ll  174 (174)
T d1vioa1         158 EEGEYRPLTQSEIEKLV  174 (174)
T ss_dssp             CTTCEEECCHHHHHHTC
T ss_pred             CCCCCEECCHHHHHHHC
T ss_conf             99871799999999669


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Pseudouridine synthase
superfamily: Pseudouridine synthase
family: Pseudouridine synthase RsuA/RluD
domain: Ribosomal small subunit pseudouridine 516 synthase RsuA
species: Haemophilus influenzae [TaxId: 727]