HHSEARCH alignment of GI: 254780406 and SCOP domain: d1vioa2

Alignment

Probab=99.47  E-value=3.2e-14  Score=106.48  Aligned_cols=57  Identities=26%  Similarity=0.340  Sum_probs=54.8

Q ss_pred             CHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEECCCCCEEECCCCEEEECCEECCC
Q ss_conf             344788999886877899999998698699999924068780799979999989225
Q gi|254780406|r   13 PQRVSKVIARAGIASRREVERMIAQQRVKVNGILLERAAVNVMSTDHIEVDGVPLRK   69 (354)
Q Consensus        13 ~~RL~K~la~~g~~SRr~a~~lI~~G~V~Vng~~v~~~~~~v~~~d~v~vdg~~i~~   69 (354)
                      ++|||||||+.+.|||++|++||++|+|+|||+++++++++|+++|.|.+||+++.+
T Consensus         1 smRLD~~Ls~~~~~SR~~a~~lI~~g~V~Vng~~v~~~~~~v~~~d~I~~~g~~l~~   57 (58)
T d1vioa2           1 SLRLDKFIAENVGLTRSQATKAIRQSAVKINGEIVKSGSVQISQEDEIYFEDELLTW   57 (58)
T ss_dssp             CEEHHHHHHHHHTCCHHHHHHHHHTTCEEETTEECCCTTCEECTTSCEEETTEECCS
T ss_pred             CCHHHHHHHHCCCCCHHHHHHHHHCCEEEECCEEECCCCCCCCCCCEEEECCEECCC
T ss_conf             927999999858978999999998592899999947788798999999999988356

SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Alpha-L RNA-binding motif
superfamily: Alpha-L RNA-binding motif
family: Pseudouridine synthase RsuA N-terminal domain
domain: Pseudouridine synthase RsuA N-terminal domain
species: Haemophilus influenzae [TaxId: 727]