HHSEARCH alignment of GI: 254780406 and SCOP domain: d2uubd1

Alignment

Probab=98.34  E-value=5e-07  Score=61.23  Aligned_cols=52  Identities=29%  Similarity=0.470  Sum_probs=49.3

Q ss_pred             HHHHHHHHHCCCC-CHHHHHHHHHCCCEEECCEECCCCCEEECCCCEEEECCE
Q ss_conf             4478899988687-789999999869869999992406878079997999998
Q gi|254780406|r   14 QRVSKVIARAGIA-SRREVERMIAQQRVKVNGILLERAAVNVMSTDHIEVDGV   65 (354)
Q Consensus        14 ~RL~K~la~~g~~-SRr~a~~lI~~G~V~Vng~~v~~~~~~v~~~d~v~vdg~   65 (354)
                      .|||-++-.+|++ ||++|.+||..|.|.|||+.|+.|++.|.++|.|.|..+
T Consensus        98 ~Rld~vv~r~g~a~t~~~ARQ~v~Hg~i~vNg~~v~ips~~~~~gd~I~vrek  150 (208)
T d2uubd1          98 SRLDNVVYRLGFAVSRRQARQLVRHGHITVNGRRVDLPSYRVRPGDEIAVAEK  150 (208)
T ss_dssp             TBHHHHHHHTTSSSSHHHHHHHHHTTCEEETTEECCCTTCBCCTTCEEEECGG
T ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHCCEECCCEEEEECCEEECCCCEEEHHHC
T ss_conf             99999998536201289888998735742288399862679428862001110

SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Alpha-L RNA-binding motif
superfamily: Alpha-L RNA-binding motif
family: Ribosomal protein S4
domain: Ribosomal protein S4
species: Thermus thermophilus [TaxId: 274]