PSIBLAST alignment of GI: 254780406 and protein with PDB id: 1qyu

>gi|40889481|pdb|1QYU|A Chain A, Structure Of The Catalytic Domain Of 23s Rrna Pseudouridine Synthase Rlud Length = 349

 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 65/239 (27%), Gaps = 31/239 (12%)

Query: 6   IVQENFTPQRVSKVIARAG-IASRREVERMIAQQRVKVNGILLERAAVNVMSTDHIEVDG 64
            V EN   QR+ + +A      SR  ++  I  QRV VNG + ++    V+  + + ++ 
Sbjct: 33  TVSENQLGQRLDQALAEXFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINA 92

Query: 65  VP--------------LRKAERTRLWLYHKPIGLVTTHSDPDGRSTVFDNLPSIFS---- 106
                           +   +   + +      +V   +     + +   L         
Sbjct: 93  EIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADV 152

Query: 107 -RVISVGRLDINTEGLLLLTNDGGLARVLELPSTQWL-----------RVYRVRFHGQVD 154
            R   V RLD +T GL ++         L     +                      +  
Sbjct: 153 PRAGIVHRLDKDTTGLXVVAKTVPAQTRLVESLQRREITREYEAVAIGHXTAGGTVDEPI 212

Query: 155 QDKLNLLKKGIVIQGICYGDMQVTLDTQKGSNAWVTVGLREGKNREIKKVFEFFNWKVN 213
                      V            +      +  + + L  G+  +I+         + 
Sbjct: 213 SRHPTKRTHXAVHPMGKPAVTHYRIXEHFRVHTRLRLRLETGRTHQIRVHXAHITHPLV 271