PSIBLAST alignment of GI: 254780406 and protein with PDB id: 1v9f
>gi|49259508|pdb|1V9F|A Chain A, Crystal Structure Of Catalytic Domain Of Pseudouridine Synthase Rlud From Escherichia Coli Length = 325
>gi|118138510|pdb|2IST|A Chain A, Crystal Structure Of Rlud From E. Coli Length = 325
Score = 64.0 bits (154), Expect = 3e-08, Method: Composition-based stats.
Identities = 31/239 (12%), Positives = 65/239 (27%), Gaps = 31/239 (12%)
Query: 6 IVQENFTPQRVSKVIARAG-IASRREVERMIAQQRVKVNGILLERAAVNVMSTDHIEVDG 64
V EN QR+ + +A SR ++ I QRV VNG + ++ V+ + + ++
Sbjct: 9 TVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINA 68
Query: 65 VP--------------LRKAERTRLWLYHKPIGLVTTHSDPDGRSTVFDNLPSIF----- 105
+ + + + +V + + + L
Sbjct: 69 EIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADV 128
Query: 106 SRVISVGRLDINTEGLLLLTNDGGLARVLELPSTQWLRVYRVRFHGQVDQ---------- 155
R V RLD +T GL+++ L +
Sbjct: 129 PRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDEPI 188
Query: 156 -DKLNLLKKGIVIQGICYGDMQVTLDTQKGSNAWVTVGLREGKNREIKKVFEFFNWKVN 213
V + + + + L G+ +I+ +
Sbjct: 189 SRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHPLV 247