PSIBLAST alignment of GI: 254780406 and protein with PDB id: 1vio

>gi|40890007|pdb|1VIO|A Chain A, Crystal Structure Of Pseudouridylate Synthase Length = 243
>gi|40890008|pdb|1VIO|B Chain B, Crystal Structure Of Pseudouridylate Synthase Length = 243
 Score =  162 bits (409), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 56/235 (23%), Positives = 108/235 (45%), Gaps = 7/235 (2%)

Query: 15  RVSKVIARAGIASRREVERMIAQQRVKVNGILLERAAVNVMSTDHIEVDGVPLRKAERTR 74
           R+ K IA     +R +  + I Q  VK+NG +++  +V +   D I  +   L   E  +
Sbjct: 4   RLDKFIAENVGLTRSQATKAIRQSAVKINGEIVKSGSVQISQEDEIYFEDELLTWIEEGQ 63

Query: 75  LWLYHKPIGLVTTHSDPDGRSTVFDNLPSIFSRVISVGRLDINTEGLLLLTNDGGLARVL 134
            ++ +KP G V ++ D D  +        +  ++ S GRLD++T GL+LLT+DG  +  +
Sbjct: 64  YFMLNKPQGCVCSNDDGDYPTIYQFFDYPLAGKLHSAGRLDVDTTGLVLLTDDGQWSHRI 123

Query: 135 ELPSTQWLRVYRVRFHGQVDQDKLNLLKKGIVIQGIC--YGDMQVTLDTQKGSNAWVTVG 192
             P     + Y V     V+++      +GI+++G        ++ +      +  V + 
Sbjct: 124 TSPKHHCEKTYLVTLADPVEENYSAACAEGILLRGEKEPTKPAKLEIL----DDYNVNLT 179

Query: 193 LREGKNREIKKVFEFFNWKVNRLIRISYGPFQLGT-LLAGSTREVSKKILREQLG 246
           + EG+  ++K++F     KV  L R   G   L   L  G  R +++  + + + 
Sbjct: 180 ISEGRYHQVKRMFAALGNKVVGLHRWKIGDVVLDESLEEGEYRPLTQSEIEKLVE 234