PSIBLAST alignment of GI: 254780406 and protein with PDB id: 1vio
>gi|40890007|pdb|1VIO|A Chain A, Crystal Structure Of Pseudouridylate Synthase Length = 243
>gi|40890008|pdb|1VIO|B Chain B, Crystal Structure Of Pseudouridylate Synthase Length = 243
Score = 162 bits (409), Expect = 8e-38, Method: Composition-based stats.
Identities = 56/235 (23%), Positives = 108/235 (45%), Gaps = 7/235 (2%)
Query: 15 RVSKVIARAGIASRREVERMIAQQRVKVNGILLERAAVNVMSTDHIEVDGVPLRKAERTR 74
R+ K IA +R + + I Q VK+NG +++ +V + D I + L E +
Sbjct: 4 RLDKFIAENVGLTRSQATKAIRQSAVKINGEIVKSGSVQISQEDEIYFEDELLTWIEEGQ 63
Query: 75 LWLYHKPIGLVTTHSDPDGRSTVFDNLPSIFSRVISVGRLDINTEGLLLLTNDGGLARVL 134
++ +KP G V ++ D D + + ++ S GRLD++T GL+LLT+DG + +
Sbjct: 64 YFMLNKPQGCVCSNDDGDYPTIYQFFDYPLAGKLHSAGRLDVDTTGLVLLTDDGQWSHRI 123
Query: 135 ELPSTQWLRVYRVRFHGQVDQDKLNLLKKGIVIQGIC--YGDMQVTLDTQKGSNAWVTVG 192
P + Y V V+++ +GI+++G ++ + + V +
Sbjct: 124 TSPKHHCEKTYLVTLADPVEENYSAACAEGILLRGEKEPTKPAKLEIL----DDYNVNLT 179
Query: 193 LREGKNREIKKVFEFFNWKVNRLIRISYGPFQLGT-LLAGSTREVSKKILREQLG 246
+ EG+ ++K++F KV L R G L L G R +++ + + +
Sbjct: 180 ISEGRYHQVKRMFAALGNKVVGLHRWKIGDVVLDESLEEGEYRPLTQSEIEKLVE 234