RPSBLAST alignment of GI: 254780406 and MMDB domain: 1v9f_A_

>1v9f_A (A:) Ribosomal large subunit pseudouridine synthase D; RNA binding, lyase; 1.70A {Escherichia coli}Length = 325

 Score = 86.0 bits (211), Expect = 6e-18
 Identities = 48/315 (15%), Positives = 91/315 (28%), Gaps = 43/315 (13%)

Query: 1   MKDKNIVQENFTPQRVSKVIARAGI-ASRREVERMIAQQRVKVNGILLERAAVNVMSTDH 59
           ++    V EN   QR+ + +A      SR  ++  I  QRV VNG + ++    V+  + 
Sbjct: 4   VQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQ 63

Query: 60  IEVDGVPLRKA-------------ERTRLWLYHKPIGLVTTHSDPDGRSTVFDNLPSIFS 106
           + ++     +A             E   + + +KP  LV      +   TV + L   + 
Sbjct: 64  VAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYP 123

Query: 107 RVIS------VGRLDINTEGLLLLTNDGGLARVLELPSTQW--LRVYRVRFHGQVDQDKL 158
            +        V RLD +T GL+++         L     +    R Y     G +     
Sbjct: 124 PIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGT 183

Query: 159 NL---------LKKGIVIQGICYGDMQVTLDTQKGSNAWVTVGLREGKNREIKKVFEFFN 209
                           V            +      +  + + L  G+  +I+       
Sbjct: 184 VDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHIT 243

Query: 210 WKVNRLIRISYGPFQLGTLLAGSTREVSKKILREQLGPHLLEEAQVNLDAPIYSSETLVR 269
             +         P             +       +     L    + L  PI S   +  
Sbjct: 244 HPLVGDPVYGGRPRPPKGASEAFISTLR------KFDRQALHATMLRLYHPI-SGIEME- 295

Query: 270 DRPNIISEVPDDFTR 284
                 + +P D   
Sbjct: 296 ----WHAPIPQDMVE 306