RPSBLAST alignment of GI: 254780406 and protein with PDBid: 3dh3

>3dh3_A Ribosomal large subunit pseudouridine synthase F; protein-RNA complex, S4 domain, alpha/beta protein, isomerase, RNA-binding, rRNA processing; HET: FHU; 3.00A {Escherichia coli} Length = 290

 Score =  157 bits (398), Expect = 3e-39
 Identities = 58/234 (24%), Positives = 103/234 (44%), Gaps = 5/234 (2%)

Query: 12  TPQRVSKVIARAGIASRREVERMIAQQRVKVNGILLERAAVNVMSTDHIEVDGVPLRKAE 71
           +  R++K I+ +GI SRRE +R I Q  V +NG         V   D ++V+G  +   E
Sbjct: 5   SSVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPGDVVKVNGQLIEPRE 63

Query: 72  RTRLWLYHKPIGLVTTHSDPDGRSTVFDNLPSIFSRVISVGRLDINTEGLLLLTNDGGLA 131
              L L      +    +  DG      +  +   RV  +GRLD +++GL+ LTN G L 
Sbjct: 64  AEDLVLIALNKPVGIVSTTEDGERDNIVDFVNHSKRVFPIGRLDKDSQGLIFLTNHGDLV 123

Query: 132 RVLELPSTQWLRVYRVRFHGQVDQDKLNLLKKGIVIQGICYGDMQVTLDTQKGSNAWVTV 191
             +        + Y V     + ++ +  +  G+ I G      +V    +K +     +
Sbjct: 124 NKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKV----KKEAPFVFRI 179

Query: 192 GLREGKNREIKKVFEFFNWKVNRLIRISYGPFQLGTLLAGSTREVSKKILREQL 245
            L +G NR+I+++ E F ++V +L R       L  +  G  R+++   L +  
Sbjct: 180 TLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLF 233