Query gi|254780407|ref|YP_003064820.1| hypothetical protein CLIBASIA_01460 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 45
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 33803
Date Wed Jun 1 12:41:01 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780407.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >2p08_A Signal transduction hi 17.5 55 0.0016 16.2 1.3 28 17-44 86-114 (115)
2 >2h1t_A Hypothetical protein; 17.4 49 0.0014 16.5 1.0 27 10-36 17-43 (90)
3 >3k9t_A Putative peptidase; st 13.6 75 0.0022 15.6 1.1 19 25-44 17-35 (59)
4 >3c2c_A Cytochrome C2; electro 8.6 75 0.0022 15.6 -0.3 13 31-43 29-41 (57)
5 >2oez_A UPF0289 protein VP2528 7.8 70 0.0021 15.7 -0.7 12 26-37 74-85 (121)
6 >2gtl_N Extracellular hemoglob 7.4 1.9E+02 0.0056 13.5 1.3 13 21-33 95-107 (135)
7 >2hvy_B GAR1, small nucleolar 7.3 1.7E+02 0.0051 13.8 1.0 23 16-38 15-37 (104)
8 >2a50_B ASFP595, GFP-like non- 7.2 2.2E+02 0.0065 13.2 1.6 35 2-36 91-130 (168)
9 >2ey4_C Small nucleolar RNP si 7.0 1.8E+02 0.0053 13.7 1.0 23 16-38 15-37 (82)
10 >2asb_A Transcription elongati 6.7 1.8E+02 0.0053 13.7 0.9 29 2-35 17-45 (76)
No 1
>>2p08_A Signal transduction histidine kinase; PAS-like domain, homologous to domain in soluble guanylyl cyclase, transferase; 2.00A {Nostoc punctiforme pcc 73102} PDB: 2p04_A (A:)
Probab=17.48 E-value=55 Score=16.24 Aligned_cols=28 Identities=18% Similarity=0.251 Sum_probs=22.0
Q ss_pred CCCCC-EEEEEEECCCCCHHHHHHCCEEC
Q ss_conf 11242-59999951787655665324031
Q gi|254780407|r 17 HRTES-RLIIVCSFRMPNLHSVMDYGITV 44 (45)
Q Consensus 17 hrtes-rliivcsfrmpnlhsvmdygitv 44 (45)
+-.|+ -++..||+.+.++..+.++|...
T Consensus 86 ~~~e~~~~lfl~Sp~i~~l~~l~~~gL~l 114 (115)
T 2p08_A 86 YQPEEEVIFFLGSPWITDTTSLAPLGIKL 114 (115)
T ss_dssp EETTTTEEEEEEEECCCTTCCC-------
T ss_pred EECCCCEEEEECCCCCCCHHHHHHCCCEE
T ss_conf 80589879998788648689997668684
No 2
>>2h1t_A Hypothetical protein; NP_250684.1, structural genomics, PSI-2, protein structure initiative, joint center for structural genomics, JCSG; 1.80A {Pseudomonas aeruginosa} (A:99-188)
Probab=17.38 E-value=49 Score=16.50 Aligned_cols=27 Identities=26% Similarity=0.240 Sum_probs=23.9
Q ss_pred EEECCCCCCCCCEEEEEEECCCCCHHH
Q ss_conf 000276111242599999517876556
Q gi|254780407|r 10 LIRDGGLHRTESRLIIVCSFRMPNLHS 36 (45)
Q Consensus 10 lirdgglhrtesrliivcsfrmpnlhs 36 (45)
-||-=||++.|+.-|.|.-.++|.|.-
T Consensus 17 PIRRl~L~~ge~~~i~vayv~~p~l~v 43 (90)
T 2h1t_A 17 PIRRLGLADGQRAEIRALYIEAPALEP 43 (90)
T ss_dssp HHHHHCCCTTCEEEEEEEEEETTTTCC
T ss_pred CEECCCCCCCCEEEEEEEEEECCCCEE
T ss_conf 012027887880799999998897658
No 3
>>3k9t_A Putative peptidase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 2.37A {Clostridium acetobutylicum} (A:69-112,A:151-165)
Probab=13.56 E-value=75 Score=15.59 Aligned_cols=19 Identities=42% Similarity=0.702 Sum_probs=13.6
Q ss_pred EEEECCCCCHHHHHHCCEEC
Q ss_conf 99951787655665324031
Q gi|254780407|r 25 IVCSFRMPNLHSVMDYGITV 44 (45)
Q Consensus 25 ivcsfrmpnlhsvmdygitv 44 (45)
.+|-|.--||| |+.|.+.|
T Consensus 17 rIvDF~~~NLH-vlgYS~PV 35 (59)
T 3k9t_A 17 KVIDFKENNLH-VXSYSVPV 35 (59)
T ss_dssp EEEETTTCGGG-BCBTCCCE
T ss_pred EEEECCCCCEE-EEECCCCE
T ss_conf 89985568368-86456650
No 4
>>3c2c_A Cytochrome C2; electron transport protein (cytochrome); HET: HEM; 1.68A {Rhodospirillum rubrum} (A:1-35,A:91-112)
Probab=8.59 E-value=75 Score=15.57 Aligned_cols=13 Identities=46% Similarity=0.749 Sum_probs=10.2
Q ss_pred CCCHHHHHHCCEE
Q ss_conf 8765566532403
Q gi|254780407|r 31 MPNLHSVMDYGIT 43 (45)
Q Consensus 31 mpnlhsvmdygit 43 (45)
=|||+.||.+-.|
T Consensus 29 GPnL~GV~~~~~~ 41 (57)
T 3c2c_A 29 GPNLFGVMTFKLT 41 (57)
T ss_dssp SCCCTTCCCCCCC
T ss_pred CCCCCCCCCCCCC
T ss_conf 8331467876789
No 5
>>2oez_A UPF0289 protein VP2528; immunoglobulin fold, alpha-structure, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.97A {Vibrio parahaemolyticus rimd 2210633} (A:59-179)
Probab=7.82 E-value=70 Score=15.73 Aligned_cols=12 Identities=42% Similarity=0.913 Sum_probs=10.2
Q ss_pred EEECCCCCHHHH
Q ss_conf 995178765566
Q gi|254780407|r 26 VCSFRMPNLHSV 37 (45)
Q Consensus 26 vcsfrmpnlhsv 37 (45)
.|+|-.|.+|--
T Consensus 74 ~C~FDLP~yh~W 85 (121)
T 2oez_A 74 SCCFDLPALHYW 85 (121)
T ss_dssp -CGGGCHHHHHH
T ss_pred CCCCCCHHHHHH
T ss_conf 767787789999
No 6
>>2gtl_N Extracellular hemoglobin linker L2 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} (N:86-220)
Probab=7.36 E-value=1.9e+02 Score=13.54 Aligned_cols=13 Identities=38% Similarity=0.787 Sum_probs=10.2
Q ss_pred CEEEEEEECCCCC
Q ss_conf 2599999517876
Q gi|254780407|r 21 SRLIIVCSFRMPN 33 (45)
Q Consensus 21 srliivcsfrmpn 33 (45)
-+|.+||+|+--|
T Consensus 95 d~lg~vC~F~~~~ 107 (135)
T 2gtl_N 95 DHLAVVCSFNRGD 107 (135)
T ss_dssp CCCEEEEECCSSS
T ss_pred CCCEEECCCCCCC
T ss_conf 7630246888777
No 7
>>2hvy_B GAR1, small nucleolar RNP similar to GAR1; H/ACA RNA, RNP, pseudouridine synthase, guide RNA, isomerase/biosynthetic protein/RNA complex; HET: ATP; 2.30A {Pyrococcus furiosus} (B:)
Probab=7.26 E-value=1.7e+02 Score=13.77 Aligned_cols=23 Identities=26% Similarity=0.456 Sum_probs=19.7
Q ss_pred CCCCCCEEEEEEECCCCCHHHHH
Q ss_conf 11124259999951787655665
Q gi|254780407|r 16 LHRTESRLIIVCSFRMPNLHSVM 38 (45)
Q Consensus 16 lhrtesrliivcsfrmpnlhsvm 38 (45)
+|.++...+|..+.+.|.+-|+.
T Consensus 15 ~~i~~~~~iI~~~~~vp~~~s~v 37 (104)
T 2hvy_B 15 LHYAKQGFLIVRTNWVPSLNDRV 37 (104)
T ss_dssp EEEETTTEEEEECSSCCCTTCEE
T ss_pred EEEECCCCEEEECCCCCCCCCEE
T ss_conf 99907888999667889999999
No 8
>>2a50_B ASFP595, GFP-like non-fluorescent chromoprotein FP595 chain 2; ASCP, fluorescent protein, photochromic protein, reversible photoswitch; HET: NRQ; 1.30A {Anemonia sulcata} PDB: 2a53_B* 2a54_B* 2a56_B* 2a52_B* 3cfa_A* 3cfh_A* 3cff_A* (B:)
Probab=7.24 E-value=2.2e+02 Score=13.22 Aligned_cols=35 Identities=14% Similarity=0.155 Sum_probs=23.5
Q ss_pred CCCCEEHHEEECCCCCCCCCEEEEEEE-----CCCCCHHH
Q ss_conf 765210100002761112425999995-----17876556
Q gi|254780407|r 2 DGDIDIKALIRDGGLHRTESRLIIVCS-----FRMPNLHS 36 (45)
Q Consensus 2 dgdidikalirdgglhrtesrliivcs-----frmpnlhs 36 (45)
-|+++.--++.|||-++..-+-..--. ..||..|-
T Consensus 91 ~g~~~~~l~l~~Gg~y~~~~~t~yk~kkp~~av~mP~~HF 130 (168)
T 2a50_B 91 RGQSLMALKCPGGRHLTCHLHTTYRSKKPASALKMPGFHF 130 (168)
T ss_dssp EEEEEEEEECTTSCEEEEEEEEEEEESSCGGGSCCCCSEE
T ss_pred EEEEEEEEEECCCCEEEEEEEEEEEECCCCCCCCCCCCEE
T ss_conf 9988899996799979999999884368875555999889
No 9
>>2ey4_C Small nucleolar RNP similar to GAR1; trimeric complex, structural genomics, PSI, protein structure initiative; 2.11A {Pyrococcus furiosus dsm 3638} (C:)
Probab=6.99 E-value=1.8e+02 Score=13.66 Aligned_cols=23 Identities=26% Similarity=0.456 Sum_probs=20.1
Q ss_pred CCCCCCEEEEEEECCCCCHHHHH
Q ss_conf 11124259999951787655665
Q gi|254780407|r 16 LHRTESRLIIVCSFRMPNLHSVM 38 (45)
Q Consensus 16 lhrtesrliivcsfrmpnlhsvm 38 (45)
+|..+..++|..+.+.|.+.|+.
T Consensus 15 ~~~~~~~~vi~~~~~vp~~~s~v 37 (82)
T 2ey4_C 15 LHYAKQGFLIVRTNWVPSLNDRV 37 (82)
T ss_dssp EEEETTTEEEEECSSCCCTTCEE
T ss_pred EEECCCCEEEEECCCCCCCCCEE
T ss_conf 99908956999777889899998
No 10
>>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} (A:82-157)
Probab=6.70 E-value=1.8e+02 Score=13.65 Aligned_cols=29 Identities=31% Similarity=0.521 Sum_probs=18.7
Q ss_pred CCCCEEHHEEECCCCCCCCCEEEEEEECCCCCHH
Q ss_conf 7652101000027611124259999951787655
Q gi|254780407|r 2 DGDIDIKALIRDGGLHRTESRLIIVCSFRMPNLH 35 (45)
Q Consensus 2 dgdidikalirdgglhrtesrliivcsfrmpnlh 35 (45)
+|.+.||+.-|+.|- |--+.-+-.-|+..
T Consensus 17 ~G~VeI~~IaR~pG~-----RtKVAV~s~~~~vD 45 (76)
T 2asb_A 17 DGSVEIVAVAREAGH-----RSKIAVRSNVAGLN 45 (76)
T ss_dssp TTSEEEEEEEEETTT-----EEEEEEEESSTTCC
T ss_pred CCEEEEEEECCCCCC-----CEEEEEEECCCCCC
T ss_conf 890999994247886-----31699993489877
Done!