Query gi|254780407|ref|YP_003064820.1| hypothetical protein CLIBASIA_01460 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 45
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 23785
Date Mon May 30 10:07:26 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780407.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2p08_A Signal transduction his 13.4 68 0.0029 15.0 1.6 25 20-44 90-114 (115)
2 1n12_A Mature fimbrial protein 11.4 68 0.0029 15.0 1.1 29 3-32 14-42 (138)
3 1fn9_A Outer-capsid protein si 7.2 1.2E+02 0.0052 13.7 1.1 11 29-39 3-13 (365)
4 2hvy_B GAR1, small nucleolar R 6.4 1.3E+02 0.0053 13.7 0.8 23 16-38 15-37 (104)
5 2ey4_C Small nucleolar RNP sim 6.2 1.5E+02 0.0062 13.3 1.0 22 16-37 15-36 (82)
6 2a50_B ASFP595, GFP-like non-f 5.7 1.9E+02 0.0081 12.7 1.6 34 3-36 92-130 (168)
7 3l8w_A Uricase, urate oxidase; 4.8 1.4E+02 0.0057 13.5 0.1 11 25-35 247-257 (296)
8 2gw3_A Kaede; beta barrel, lum 3.9 2.6E+02 0.011 12.0 1.3 34 3-36 155-191 (225)
9 1p8b_A PEA albumin 1, subunit 3.7 2.5E+02 0.011 12.1 0.8 11 26-36 6-17 (37)
10 2h1t_A Hypothetical protein; N 3.7 2.8E+02 0.012 12.0 1.0 25 11-35 116-140 (188)
No 1
>2p08_A Signal transduction histidine kinase; PAS-like domain, homologous to domain in soluble guanylyl cyclase, transferase; 2.00A {Nostoc punctiforme pcc 73102} PDB: 2p04_A
Probab=13.38 E-value=68 Score=15.02 Aligned_cols=25 Identities=20% Similarity=0.288 Sum_probs=20.5
Q ss_pred CCEEEEEEECCCCCHHHHHHCCEEC
Q ss_conf 4259999951787655665324031
Q gi|254780407|r 20 ESRLIIVCSFRMPNLHSVMDYGITV 44 (45)
Q Consensus 20 esrliivcsfrmpnlhsvmdygitv 44 (45)
...++..||..+.+|..+.++|...
T Consensus 90 ~~~~lFl~SP~v~~l~~l~~~GL~l 114 (115)
T 2p08_A 90 EEVIFFLGSPWITDTTSLAPLGIKL 114 (115)
T ss_dssp TTEEEEEEEECCCTTCCC-------
T ss_pred CCEEEEECCCCCCCHHHHHHCCCEE
T ss_conf 9989998787648689997669583
No 2
>1n12_A Mature fimbrial protein PAPE; immunoglobulin-like fold, donor strand complementation; HET: MSE; 1.87A {Escherichia coli} SCOP: b.2.3.2 PDB: 1n0l_B*
Probab=11.41 E-value=68 Score=15.02 Aligned_cols=29 Identities=24% Similarity=0.617 Sum_probs=23.2
Q ss_pred CCCEEHHEEECCCCCCCCCEEEEEEECCCC
Q ss_conf 652101000027611124259999951787
Q gi|254780407|r 3 GDIDIKALIRDGGLHRTESRLIIVCSFRMP 32 (45)
Q Consensus 3 gdidikalirdgglhrtesrliivcsfrmp 32 (45)
||++|..|..+|+ |..|-..-.-|.+..-
T Consensus 14 gnvEIQ~L~q~G~-~~K~FtV~M~CPY~LG 42 (138)
T 1n12_A 14 QDVEIQTLSQNGN-HEKEFTVNMRCPYNLG 42 (138)
T ss_dssp EEEEGGGCCTTCE-EEEEEEEEEECSCCCS
T ss_pred CCEEEEEEECCCC-CCCEEEECCCCCCCCC
T ss_conf 6178899404899-6522588021773236
No 3
>1fn9_A Outer-capsid protein sigma 3; zinc binding motif, viral protein; 1.80A {Reovirus SP} SCOP: d.196.1.1 PDB: 2cse_S 1jmu_G*
Probab=7.19 E-value=1.2e+02 Score=13.70 Aligned_cols=11 Identities=45% Similarity=0.715 Sum_probs=6.4
Q ss_pred CCCCCHHHHHH
Q ss_conf 17876556653
Q gi|254780407|r 29 FRMPNLHSVMD 39 (45)
Q Consensus 29 frmpnlhsvmd 39 (45)
.|.||.||+.+
T Consensus 3 VRlPNfHS~VE 13 (365)
T 1fn9_A 3 VCLPNGHQVVD 13 (365)
T ss_dssp CCCCCHHHHHH
T ss_pred CCCCCCHHHHH
T ss_conf 44677114999
No 4
>2hvy_B GAR1, small nucleolar RNP similar to GAR1; H/ACA RNA, RNP, pseudouridine synthase, guide RNA, isomerase/biosynthetic protein/RNA complex; HET: ATP; 2.30A {Pyrococcus furiosus} SCOP: b.43.3.5 PDB: 3hay_B*
Probab=6.45 E-value=1.3e+02 Score=13.65 Aligned_cols=23 Identities=26% Similarity=0.456 Sum_probs=17.7
Q ss_pred CCCCCCEEEEEEECCCCCHHHHH
Q ss_conf 11124259999951787655665
Q gi|254780407|r 16 LHRTESRLIIVCSFRMPNLHSVM 38 (45)
Q Consensus 16 lhrtesrliivcsfrmpnlhsvm 38 (45)
+|.++..++|+.+-+.|.+.|++
T Consensus 15 ~~i~~~g~lIv~~~~~p~~gs~v 37 (104)
T 2hvy_B 15 LHYAKQGFLIVRTNWVPSLNDRV 37 (104)
T ss_dssp EEEETTTEEEEECSSCCCTTCEE
T ss_pred EEEECCCCEEEECCCCCCCCCEE
T ss_conf 99905788999807779999999
No 5
>2ey4_C Small nucleolar RNP similar to GAR1; trimeric complex, structural genomics, PSI, protein structure initiative; 2.11A {Pyrococcus furiosus dsm 3638} SCOP: b.43.3.5 PDB: 2rfk_C
Probab=6.21 E-value=1.5e+02 Score=13.33 Aligned_cols=22 Identities=27% Similarity=0.453 Sum_probs=17.7
Q ss_pred CCCCCCEEEEEEECCCCCHHHH
Q ss_conf 1112425999995178765566
Q gi|254780407|r 16 LHRTESRLIIVCSFRMPNLHSV 37 (45)
Q Consensus 16 lhrtesrliivcsfrmpnlhsv 37 (45)
+|.+++.++|+.+-+.|.+.++
T Consensus 15 ~hi~~~~~lI~~~~~vp~~~s~ 36 (82)
T 2ey4_C 15 LHYAKQGFLIVRTNWVPSLNDR 36 (82)
T ss_dssp EEEETTTEEEEECSSCCCTTCE
T ss_pred EEEECCCCEEEECCCCCCCCCE
T ss_conf 9991797299978888989999
No 6
>2a50_B ASFP595, GFP-like non-fluorescent chromoprotein FP595 chain 2; ASCP, fluorescent protein, photochromic protein, reversible photoswitch; HET: NRQ; 1.30A {Anemonia sulcata} PDB: 2a53_B* 2a54_B* 2a56_B* 2a52_B* 3cfa_A* 3cfh_A* 3cff_A*
Probab=5.66 E-value=1.9e+02 Score=12.74 Aligned_cols=34 Identities=15% Similarity=0.173 Sum_probs=20.9
Q ss_pred CCCEEHHEEECCCCCCCCCEEEEEE-----ECCCCCHHH
Q ss_conf 6521010000276111242599999-----517876556
Q gi|254780407|r 3 GDIDIKALIRDGGLHRTESRLIIVC-----SFRMPNLHS 36 (45)
Q Consensus 3 gdidikalirdgglhrtesrliivc-----sfrmpnlhs 36 (45)
||++.--++.|||-+|.+-+-..-- ...||..|-
T Consensus 92 g~~~m~l~l~~Gg~y~c~~~T~Yk~kKp~~~v~mP~~Hf 130 (168)
T 2a50_B 92 GQSLMALKCPGGRHLTCHLHTTYRSKKPASALKMPGFHF 130 (168)
T ss_dssp EEEEEEEECTTSCEEEEEEEEEEEESSCGGGSCCCCSEE
T ss_pred EEEEEEEEECCCCEEEEEEEEEEEECCCCCCCCCCCCEE
T ss_conf 877899996799969999898786578875455999889
No 7
>3l8w_A Uricase, urate oxidase; oxidoreductase, URIC acid degradation, xanthine, inhibition aspergillus flavus, acetylation, peroxisome; HET: XAN 4PO; 1.00A {Aspergillus flavus} PDB: 3l9g_A* 3lbg_A* 3ld4_A* 3bk8_A* 1r4s_A* 1r51_A* 1r56_A 1r4u_A* 1ws2_A* 1ws3_A 1xt4_A* 1xxj_A* 1xy3_A* 2fub_A* 2fxl_A* 3bjp_A* 1wrr_A* 3gko_A* 2iba_A* 2ic0_A* ...
Probab=4.78 E-value=1.4e+02 Score=13.51 Aligned_cols=11 Identities=27% Similarity=0.622 Sum_probs=5.2
Q ss_pred EEEECCCCCHH
Q ss_conf 99951787655
Q gi|254780407|r 25 IVCSFRMPNLH 35 (45)
Q Consensus 25 ivcsfrmpnlh 35 (45)
-..+|.|||.|
T Consensus 247 ~eV~~~~PNkH 257 (296)
T 3l8w_A 247 ETVEYSLPNKH 257 (296)
T ss_dssp EEEEEEEEECC
T ss_pred EEEEEECCCCC
T ss_conf 79999788765
No 8
>2gw3_A Kaede; beta barrel, luminescent protein; HET: CR8; 1.40A {Trachyphyllia geoffroyi} PDB: 1zux_A* 2vvh_A* 2vvi_A* 2vvj_A* 2btj_A* 2gw4_B* 2ddc_A* 2ddd_A* 2ie2_A* 2z1o_A* 2z6y_A* 2gx2_A* 2gx0_A* 3ls3_A* 3lsa_A* 1xss_A*
Probab=3.87 E-value=2.6e+02 Score=12.05 Aligned_cols=34 Identities=24% Similarity=0.396 Sum_probs=20.1
Q ss_pred CCCEEHHEEECCCCCCCCCEEEEEE---ECCCCCHHH
Q ss_conf 6521010000276111242599999---517876556
Q gi|254780407|r 3 GDIDIKALIRDGGLHRTESRLIIVC---SFRMPNLHS 36 (45)
Q Consensus 3 gdidikalirdgglhrtesrliivc---sfrmpnlhs 36 (45)
||++.--++.|||-+|.+-+-..-- +..||..|-
T Consensus 155 g~~~~~l~l~~Gg~y~c~~~T~Yk~kk~~v~mP~~HF 191 (225)
T 2gw3_A 155 GDITMALLLKGDVHYRCDFRTTYKSRQEGVKLPGYHF 191 (225)
T ss_dssp EEEEEEEEETTTEEEEEEEEEEEEECSTTCCCCCSEE
T ss_pred EEEEEEEEECCCCEEEEEEEEEEEECCCCCCCCCCEE
T ss_conf 8678999967998399999987631897656999888
No 9
>1p8b_A PEA albumin 1, subunit B; inhibitor cystine-knot, plant protein; NMR {Pisum sativum} SCOP: g.3.6.4
Probab=3.75 E-value=2.5e+02 Score=12.13 Aligned_cols=11 Identities=55% Similarity=1.032 Sum_probs=6.7
Q ss_pred EEE-CCCCCHHH
Q ss_conf 995-17876556
Q gi|254780407|r 26 VCS-FRMPNLHS 36 (45)
Q Consensus 26 vcs-frmpnlhs 36 (45)
+|| |.||---|
T Consensus 6 ~CSPFemPPCgs 17 (37)
T 1p8b_A 6 VCSPFEMPPCGT 17 (37)
T ss_dssp EECTTCSSGGGC
T ss_pred CCCCCCCCCCCC
T ss_conf 016663698899
No 10
>2h1t_A Hypothetical protein; NP_250684.1, structural genomics, PSI-2, protein structure initiative, joint center for structural genomics, JCSG; 1.80A {Pseudomonas aeruginosa} SCOP: b.178.1.1
Probab=3.66 E-value=2.8e+02 Score=11.95 Aligned_cols=25 Identities=28% Similarity=0.284 Sum_probs=0.0
Q ss_pred EECCCCCCCCCEEEEEEECCCCCHH
Q ss_conf 0027611124259999951787655
Q gi|254780407|r 11 IRDGGLHRTESRLIIVCSFRMPNLH 35 (45)
Q Consensus 11 irdgglhrtesrliivcsfrmpnlh 35 (45)
||-=||+..|+.-|.|--.++|.|.
T Consensus 116 IRRLgL~~ge~~~i~vayV~~P~L~ 140 (188)
T 2h1t_A 116 IRRLGLADGQRAEIRALYIEAPALE 140 (188)
T ss_dssp HHHHCCCTTCEEEEEEEEEETTTTC
T ss_pred HHCCCCCCCCCEEEEEEEEECCCCE
T ss_conf 3002787788179999999899865
Done!