Query gi|254780407|ref|YP_003064820.1| hypothetical protein CLIBASIA_01460 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 45
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 13730
Date Wed Jun 1 03:55:35 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780407.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1fn9a_ d.196.1.1 (A:) Outer c 7.1 73 0.0054 13.6 1.1 11 29-39 3-13 (365)
2 d2asba2 d.52.3.1 (A:184-262) T 6.8 72 0.0053 13.7 0.9 29 2-35 19-47 (79)
3 d2gtln1 b.61.7.1 (N:102-229) E 6.3 1E+02 0.0074 12.9 1.5 13 21-33 88-100 (128)
4 d2gtlo1 b.61.7.1 (O:101-222) E 6.2 1E+02 0.0075 12.9 1.7 14 20-33 83-96 (122)
5 d1j2ga2 d.96.1.4 (A:159-312) U 6.0 58 0.0043 14.1 0.1 12 24-35 109-120 (154)
6 d2ey4c1 b.43.3.5 (C:1-73) Gar1 5.7 94 0.0069 13.1 1.0 22 16-37 8-29 (73)
7 d2gtlm1 b.61.7.1 (M:102-225) H 5.5 84 0.0061 13.4 0.7 13 21-33 87-99 (124)
8 d1hh2p2 d.52.3.1 (P:199-276) T 5.3 82 0.006 13.4 0.5 29 2-35 19-47 (78)
9 d2ibaa2 d.96.1.4 (A:137-295) U 5.2 70 0.0051 13.7 0.1 13 24-36 109-121 (159)
10 d2yzca2 d.96.1.4 (A:142-297) U 4.6 82 0.006 13.4 0.1 13 24-36 99-111 (156)
No 1
>d1fn9a_ d.196.1.1 (A:) Outer capsid protein sigma 3 {Reovirus [TaxId: 10891]}
Probab=7.06 E-value=73 Score=13.65 Aligned_cols=11 Identities=45% Similarity=0.715 Sum_probs=6.3
Q ss_pred CCCCCHHHHHH
Q ss_conf 17876556653
Q gi|254780407|r 29 FRMPNLHSVMD 39 (45)
Q Consensus 29 frmpnlhsvmd 39 (45)
.|.||.||+.+
T Consensus 3 VRlPNfHSvVE 13 (365)
T d1fn9a_ 3 VCLPNGHQVVD 13 (365)
T ss_dssp CCCCCHHHHHH
T ss_pred CCCCCCHHHHH
T ss_conf 44677114999
No 2
>d2asba2 d.52.3.1 (A:184-262) Transcription factor NusA, C-terminal domains {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=6.77 E-value=72 Score=13.68 Aligned_cols=29 Identities=31% Similarity=0.521 Sum_probs=19.3
Q ss_pred CCCCEEHHEEECCCCCCCCCEEEEEEECCCCCHH
Q ss_conf 7652101000027611124259999951787655
Q gi|254780407|r 2 DGDIDIKALIRDGGLHRTESRLIIVCSFRMPNLH 35 (45)
Q Consensus 2 dgdidikalirdgglhrtesrliivcsfrmpnlh 35 (45)
||.+.||+.-|+-|. |--+.-+-.-|+..
T Consensus 19 ~G~veI~~iaR~pG~-----RtKVAV~s~~~~vD 47 (79)
T d2asba2 19 DGSVEIVAVAREAGH-----RSKIAVRSNVAGLN 47 (79)
T ss_dssp TTSEEEEEEEEETTT-----EEEEEEEESSTTCC
T ss_pred CCEEEEEEEECCCCC-----EEEEEEEECCCCCC
T ss_conf 885999986336786-----16899981378878
No 3
>d2gtln1 b.61.7.1 (N:102-229) Extracellular hemoglobin linker l2 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]}
Probab=6.29 E-value=1e+02 Score=12.94 Aligned_cols=13 Identities=38% Similarity=0.787 Sum_probs=10.2
Q ss_pred CEEEEEEECCCCC
Q ss_conf 2599999517876
Q gi|254780407|r 21 SRLIIVCSFRMPN 33 (45)
Q Consensus 21 srliivcsfrmpn 33 (45)
-+|.+||+|.--|
T Consensus 88 dglglvC~F~~~~ 100 (128)
T d2gtln1 88 DHLAVVCSFNRGD 100 (128)
T ss_dssp CCCEEEEECCSSS
T ss_pred CCEEEEEEECCCC
T ss_conf 8489999863888
No 4
>d2gtlo1 b.61.7.1 (O:101-222) Extracellular hemoglobin linker l3 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]}
Probab=6.22 E-value=1e+02 Score=12.92 Aligned_cols=14 Identities=36% Similarity=0.261 Sum_probs=10.5
Q ss_pred CCEEEEEEECCCCC
Q ss_conf 42599999517876
Q gi|254780407|r 20 ESRLIIVCSFRMPN 33 (45)
Q Consensus 20 esrliivcsfrmpn 33 (45)
+-+|.+||+|.--|
T Consensus 83 ~dgLg~vC~F~g~d 96 (122)
T d2gtlo1 83 EDGLGLVGEFDGYN 96 (122)
T ss_dssp TTTEEEEEEECSSC
T ss_pred CCCEEEEEEECCCC
T ss_conf 89589999974888
No 5
>d1j2ga2 d.96.1.4 (A:159-312) Urate oxidase (uricase) {Bacillus sp., strain TB-90 [TaxId: 1409]}
Probab=6.02 E-value=58 Score=14.15 Aligned_cols=12 Identities=17% Similarity=0.127 Sum_probs=7.6
Q ss_pred EEEEECCCCCHH
Q ss_conf 999951787655
Q gi|254780407|r 24 IIVCSFRMPNLH 35 (45)
Q Consensus 24 iivcsfrmpnlh 35 (45)
|-.-+|.|||.|
T Consensus 109 i~~I~~~~PNkH 120 (154)
T d1j2ga2 109 LQEVYFESQNHT 120 (154)
T ss_dssp EEEEEEEEEECC
T ss_pred EEEEEEECCCCC
T ss_conf 079999848853
No 6
>d2ey4c1 b.43.3.5 (C:1-73) Gar1 homolog PF1791 {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=5.72 E-value=94 Score=13.10 Aligned_cols=22 Identities=27% Similarity=0.453 Sum_probs=17.4
Q ss_pred CCCCCCEEEEEEECCCCCHHHH
Q ss_conf 1112425999995178765566
Q gi|254780407|r 16 LHRTESRLIIVCSFRMPNLHSV 37 (45)
Q Consensus 16 lhrtesrliivcsfrmpnlhsv 37 (45)
+|.+++.++|+++-..|.+.++
T Consensus 8 ~hi~~~~~vI~~~~~~p~~~~~ 29 (73)
T d2ey4c1 8 LHYAKQGFLIVRTNWVPSLNDR 29 (73)
T ss_dssp EEEETTTEEEEECSSCCCTTCE
T ss_pred EEECCCCEEEEECCCCCCCCCE
T ss_conf 9990896099977888989999
No 7
>d2gtlm1 b.61.7.1 (M:102-225) Hemoglobin linker chain l1 {Common earthworm (Lumbricus terrestris) [TaxId: 6398]}
Probab=5.54 E-value=84 Score=13.35 Aligned_cols=13 Identities=15% Similarity=0.605 Sum_probs=9.8
Q ss_pred CEEEEEEECCCCC
Q ss_conf 2599999517876
Q gi|254780407|r 21 SRLIIVCSFRMPN 33 (45)
Q Consensus 21 srliivcsfrmpn 33 (45)
-+|.+||+|+--|
T Consensus 87 dgLg~vC~F~~~d 99 (124)
T d2gtlm1 87 EGYGVICDFNLGD 99 (124)
T ss_dssp CCCCEEEECTTSS
T ss_pred CCEEEEEEEECCC
T ss_conf 8189999974789
No 8
>d1hh2p2 d.52.3.1 (P:199-276) Transcription factor NusA, C-terminal domains {Thermotoga maritima [TaxId: 2336]}
Probab=5.28 E-value=82 Score=13.41 Aligned_cols=29 Identities=41% Similarity=0.701 Sum_probs=18.4
Q ss_pred CCCCEEHHEEECCCCCCCCCEEEEEEECCCCCHH
Q ss_conf 7652101000027611124259999951787655
Q gi|254780407|r 2 DGDIDIKALIRDGGLHRTESRLIIVCSFRMPNLH 35 (45)
Q Consensus 2 dgdidikalirdgglhrtesrliivcsfrmpnlh 35 (45)
||.+.||+.-|+-|. || -+-|-| .-|+..
T Consensus 19 ~G~VeI~~iaR~pG~-Rt---KVAV~s-~~~~iD 47 (78)
T d1hh2p2 19 NGIVEIKAIAREPGV-RT---KVAVAS-NDPNVD 47 (78)
T ss_dssp HSSEEEEEEEEETTT-EE---EEEEEE-SSTTSC
T ss_pred CCEEEEEEEECCCCC-EE---EEEEEE-CCCCCC
T ss_conf 885999995137776-27---899982-389977
No 9
>d2ibaa2 d.96.1.4 (A:137-295) Urate oxidase (uricase) {Aspergillus flavus [TaxId: 5059]}
Probab=5.20 E-value=70 Score=13.75 Aligned_cols=13 Identities=31% Similarity=0.580 Sum_probs=7.4
Q ss_pred EEEEECCCCCHHH
Q ss_conf 9999517876556
Q gi|254780407|r 24 IIVCSFRMPNLHS 36 (45)
Q Consensus 24 iivcsfrmpnlhs 36 (45)
|-.-+|.|||.|-
T Consensus 109 i~~I~~~~PNkH~ 121 (159)
T d2ibaa2 109 IETVEYSLPNKHY 121 (159)
T ss_dssp EEEEEEEEEECCE
T ss_pred EEEEEEECCCCCE
T ss_conf 1699998886543
No 10
>d2yzca2 d.96.1.4 (A:142-297) Urate oxidase (uricase) {Arthrobacter globiformis [TaxId: 1665]}
Probab=4.60 E-value=82 Score=13.41 Aligned_cols=13 Identities=31% Similarity=0.427 Sum_probs=8.7
Q ss_pred EEEEECCCCCHHH
Q ss_conf 9999517876556
Q gi|254780407|r 24 IIVCSFRMPNLHS 36 (45)
Q Consensus 24 iivcsfrmpnlhs 36 (45)
|-.-+|.|||.|-
T Consensus 99 i~~I~~~lPNkH~ 111 (156)
T d2yzca2 99 IDEIKMSLPNKHH 111 (156)
T ss_dssp EEEEEEEEEECCE
T ss_pred CEEEEEECCCCCE
T ss_conf 1699998876443
Done!