Query gi|254780408|ref|YP_003064821.1| hypothetical protein CLIBASIA_01465 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 75 No_of_seqs 115 out of 255 Neff 3.2 Searched_HMMs 33803 Date Wed Jun 1 12:35:42 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780408.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >2k5k_A Uncharacterized protei 99.9 1.6E-25 4.6E-30 154.0 3.4 62 12-75 1-62 (70) 2 >2qfd_A Probable ATP-dependent 29.7 16 0.00047 18.1 0.5 19 55-73 24-42 (69) 3 >3eqt_A ATP-dependent RNA heli 17.3 36 0.0011 16.3 0.2 14 60-73 31-44 (69) 4 >1wpc_A Glucan 1,4-alpha-malto 14.7 62 0.0018 15.1 0.9 15 59-73 29-45 (102) 5 >1zb9_A OHR, organic hydropero 14.1 65 0.0019 15.0 0.9 10 46-55 34-43 (43) 6 >1ud2_A Amylase, alpha-amylase 10.6 97 0.0029 14.1 0.9 12 61-72 18-31 (89) 7 >3c66_C PRE-mRNA polyadenylati 10.2 85 0.0025 14.4 0.5 10 55-64 7-16 (26) 8 >1hvx_A Alpha-amylase; hydrola 9.6 1.2E+02 0.0036 13.6 1.1 12 61-72 18-31 (121) 9 >3bc9_A AMYB, alpha amylase, c 9.1 1.2E+02 0.0035 13.6 0.9 12 61-72 18-31 (94) 10 >3gme_D Ribonuclease E; protei 8.5 87 0.0026 14.3 0.0 10 59-68 1-10 (41) No 1 >>2k5k_A Uncharacterized protein RHR2; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Rhodobacter sphaeroides 2} (A:) Probab=99.91 E-value=1.6e-25 Score=153.95 Aligned_cols=62 Identities=48% Similarity=0.854 Sum_probs=54.8 Q ss_pred HCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCCCCCCCCHHCCCEECCC Q ss_conf 0046555754458999999999999974122122106510188889986433610007865149 Q gi|254780408|r 12 MNNSTIKTSHDPLSSIAKRALEEAKQRKSANNKDAKLPIEIGGRKGLDPTRFGDWEKNGISIDF 75 (75) Q Consensus 12 m~~~~~~~~~~~ls~aA~rAL~Ea~~rr~~~~~~~~~pkE~gG~~G~ePtRyGDWE~kG~~~DF 75 (75) |+++ .+++.++|+++|+|||+||++|+.+.. ...+|+|+|||+|||||||||||+||||||| T Consensus 1 m~~~-~~~~~~~l~~aA~ral~Ea~~rr~~~~-~~~~~~E~GG~~G~EPtRyGDWE~kGr~~DF 62 (70) T 2k5k_A 1 MRDM-TEETRKDLPPEALRALAEAEERRRRAK-ALDLPKEIGGRNGPEPVRFGDWEKKGIAIDF 62 (70) T ss_dssp CCSC-CCSCCCSCCTHHHHHHHHHHTCCTTTT-TCCCCCCSCCCCCCCCCSCCCCCCCSTTCCC T ss_pred CCCC-CCCCCCCCCHHHHHHHHHHHHHHHHHH-HCCCCCCCCCCCCCCCCCCCCHHHCCEEEEH T ss_conf 9876-656667799999999999999886122-0237722389999998655631117876404 No 2 >>2qfd_A Probable ATP-dependent RNA helicase DDX58; zinc finger, alternative splicing, antiviral defense, ATP- binding, hydrolase, immune response; 2.70A {Homo sapiens} PDB: 2qfb_A 2rmj_A (A:42-110) Probab=29.71 E-value=16 Score=18.15 Aligned_cols=19 Identities=26% Similarity=0.462 Sum_probs=14.6 Q ss_pred CCCCCCCCCCCHHCCCEEC Q ss_conf 8899864336100078651 Q gi|254780408|r 55 RKGLDPTRFGDWEKNGISI 73 (75) Q Consensus 55 ~~G~ePtRyGDWE~kG~~~ 73 (75) +.-|.|..|+||+..|..+ T Consensus 24 ~~~p~~k~f~d~~~~~kI~ 42 (69) T 2qfd_A 24 RPHPKPKQFSSFEKRAKIF 42 (69) T ss_dssp EECSSCCCCSSEEEEEEEE T ss_pred CCCCCCCCCCCCCCCCEEE T ss_conf 2367673312413275799 No 3 >>3eqt_A ATP-dependent RNA helicase DHX58; innate immunity, RIG-I-like helicases, viral RNA detection, LGP2/dsRNA complex, ATP-binding, coiled coil; 2.00A {Homo sapiens} PDB: 2w4r_A 2rqa_A (A:28-96) Probab=17.27 E-value=36 Score=16.32 Aligned_cols=14 Identities=29% Similarity=0.693 Sum_probs=11.1 Q ss_pred CCCCCCHHCCCEEC Q ss_conf 64336100078651 Q gi|254780408|r 60 PTRFGDWEKNGISI 73 (75) Q Consensus 60 PtRyGDWE~kG~~~ 73 (75) |-.|+||+..|..+ T Consensus 31 ~k~f~d~~~~gkI~ 44 (69) T 3eqt_A 31 NKVFKDWKPGGVIS 44 (69) T ss_dssp SSCCSSEEEEEEEE T ss_pred CCHHHCCEECCEEE T ss_conf 54010212177899 No 4 >>1wpc_A Glucan 1,4-alpha-maltohexaosidase; maltohexaose-producing amylase, alpha-amylase, acarbose, hydrolase; HET: ACI GLC GAL; 1.90A {Bacillus SP} (A:384-485) Probab=14.67 E-value=62 Score=15.09 Aligned_cols=15 Identities=27% Similarity=0.297 Sum_probs=11.5 Q ss_pred CCCCCCCHHCC--CEEC Q ss_conf 86433610007--8651 Q gi|254780408|r 59 DPTRFGDWEKN--GISI 73 (75) Q Consensus 59 ePtRyGDWE~k--G~~~ 73 (75) -=+||||.|+. |.+. T Consensus 29 g~vR~G~~~~p~sGlav 45 (102) T 1wpc_A 29 GWTREGNTAHPNSGLAT 45 (102) T ss_dssp EEEECCCTTSTTCCEEE T ss_pred EEEECCCCCCCCCEEEE T ss_conf 99984787777840899 No 5 >>1zb9_A OHR, organic hydroperoxide resistance protein; oxidoreductase; HET: PE4; 1.80A {Xylella fastidiosa 9A5C} PDB: 1zb8_A* (A:1-43) Probab=14.12 E-value=65 Score=14.95 Aligned_cols=10 Identities=30% Similarity=0.690 Sum_probs=7.3 Q ss_pred HCCCHHCCCC Q ss_conf 1065101888 Q gi|254780408|r 46 AKLPIEIGGR 55 (75) Q Consensus 46 ~~~pkE~gG~ 55 (75) -..|+|.||| T Consensus 34 L~~PkelGGp 43 (43) T 1zb9_A 34 LSVPQGLGGP 43 (43) T ss_dssp ECCCGGGTSC T ss_pred ECCCHHHCCC T ss_conf 0552531899 No 6 >>1ud2_A Amylase, alpha-amylase; calcium-free, alkaline, hydrolase; 2.13A {Bacillus SP} (A:392-480) Probab=10.63 E-value=97 Score=14.06 Aligned_cols=12 Identities=33% Similarity=0.545 Sum_probs=9.0 Q ss_pred CCCCCHHCC--CEE Q ss_conf 433610007--865 Q gi|254780408|r 61 TRFGDWEKN--GIS 72 (75) Q Consensus 61 tRyGDWE~k--G~~ 72 (75) ||+||.|+. |.+ T Consensus 18 ~R~G~~~~p~sGla 31 (89) T 1ud2_A 18 TREGSSSRPNSGLA 31 (89) T ss_dssp EECCCTTSTTCCEE T ss_pred EEECCCCCCCCCEE T ss_conf 99478887685089 No 7 >>3c66_C PRE-mRNA polyadenylation factor FIP1; peptide-protein complex, mRNA processing, nucleus, RNA- binding, transferase, phosphoprotein; HET: MES; 2.60A {Saccharomyces cerevisiae} (C:) Probab=10.18 E-value=85 Score=14.37 Aligned_cols=10 Identities=50% Similarity=0.787 Sum_probs=7.2 Q ss_pred CCCCCCCCCC Q ss_conf 8899864336 Q gi|254780408|r 55 RKGLDPTRFG 64 (75) Q Consensus 55 ~~G~ePtRyG 64 (75) --||+|||.. T Consensus 7 slgpdptrld 16 (26) T 3c66_C 7 SLGPDPTRLD 16 (26) T ss_dssp CSSSSTTEEE T ss_pred EECCCCCHHH T ss_conf 6089920452 No 8 >>1hvx_A Alpha-amylase; hydrolase, glycosyltransferase, alpha-1,4-glucan-4-glucanohydrolase, thermostability, calcium, sodium; 2.00A {Geobacillus stearothermophilus} (A:395-515) Probab=9.55 E-value=1.2e+02 Score=13.56 Aligned_cols=12 Identities=50% Similarity=0.554 Sum_probs=8.5 Q ss_pred CCCCCHHCC--CEE Q ss_conf 433610007--865 Q gi|254780408|r 61 TRFGDWEKN--GIS 72 (75) Q Consensus 61 tRyGDWE~k--G~~ 72 (75) ||+||+++. |.+ T Consensus 18 vR~G~~~hp~sGlA 31 (121) T 1hvx_A 18 TREGVTEKPGSGLA 31 (121) T ss_dssp EECCBTTBTTCCEE T ss_pred ECCCCCCCCCCCEE T ss_conf 41786556798649 No 9 >>3bc9_A AMYB, alpha amylase, catalytic region; acarbose, thermostable, halophilic, N domain, RAW starch binding, hydrolase; HET: G6D GLC ACI BGC ACR; 1.35A {Halothermothrix orenii h 168} PDB: 3bcd_A* 3bcf_A (A:506-599) Probab=9.10 E-value=1.2e+02 Score=13.58 Aligned_cols=12 Identities=25% Similarity=0.227 Sum_probs=8.8 Q ss_pred CCCCCHHCC--CEE Q ss_conf 433610007--865 Q gi|254780408|r 61 TRFGDWEKN--GIS 72 (75) Q Consensus 61 tRyGDWE~k--G~~ 72 (75) ||+||.++. |.+ T Consensus 18 ~R~G~~~hp~sGla 31 (94) T 3bc9_A 18 VRSGFPDVAGDGLV 31 (94) T ss_dssp EECCCTTSTTCCEE T ss_pred EECCCCCCCCCEEE T ss_conf 96786666797399 No 10 >>3gme_D Ribonuclease E; protein-RNA complex, cytoplasm, nucleotidyltransferase, RNA- binding, transferase, hydrolase; 2.40A {Escherichia coli E24377A} PDB: 3gcm_D 3h1c_D (D:) Probab=8.52 E-value=87 Score=14.30 Aligned_cols=10 Identities=30% Similarity=1.046 Sum_probs=0.0 Q ss_pred CCCCCCCHHC Q ss_conf 8643361000 Q gi|254780408|r 59 DPTRFGDWEK 68 (75) Q Consensus 59 ePtRyGDWE~ 68 (75) ||.|-+||++ T Consensus 1 e~~~~sdW~R 10 (41) T 3gme_D 1 EAPRHSDWQR 10 (41) T ss_dssp ---------- T ss_pred CCCCCCCCCC T ss_conf 9854465317 Done!