RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780408|ref|YP_003064821.1| hypothetical protein
CLIBASIA_01465 [Candidatus Liberibacter asiaticus str. psy62]
         (75 letters)



>2k5k_A Uncharacterized protein RHR2; structural genomics, PSI-2,
          protein structure initiative, northeast structural
          genomics consortium, NESG; NMR {Rhodobacter sphaeroides
          2} (A:)
          Length = 70

 Score = 80.3 bits (198), Expect = 8e-17
 Identities = 30/64 (46%), Positives = 38/64 (59%), Gaps = 2/64 (3%)

Query: 12 MNNSTIKTSHDPLSSIAKRALEEAKQRKSANNKDAKLPIEIGGRKGLDPTRFGDWEKNGI 71
          M + T + +   L   A RAL EA++R+         P EIGGR G +P RFGDWEK GI
Sbjct: 1  MRDMT-EETRKDLPPEALRALAEAEERRRRAKALDL-PKEIGGRNGPEPVRFGDWEKKGI 58

Query: 72 SIDF 75
          +IDF
Sbjct: 59 AIDF 62


>1cii_A Colicin IA; bacteriocin, ION channel formation,
           transmembrane protein; 3.00A {Escherichia coli}
           (A:1-206)
          Length = 206

 Score = 27.1 bits (59), Expect = 0.79
 Identities = 17/55 (30%), Positives = 30/55 (54%)

Query: 16  TIKTSHDPLSSIAKRALEEAKQRKSANNKDAKLPIEIGGRKGLDPTRFGDWEKNG 70
           +++ S     S+ ++A +  K  ++A+ K A +  E   RKG+  TR  + EKNG
Sbjct: 149 SLRISPREARSLIEQAEKRQKDAQNADKKAADMLAEYERRKGILDTRLSELEKNG 203


>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)-
          methyltransferase TRMFO; tRNA methyltransferase FAD
          folate, cytoplasm, FAD, flavoprotein; HET: MSE FAD GTT;
          1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*
          (A:153-316)
          Length = 164

 Score = 23.9 bits (52), Expect = 8.1
 Identities = 7/24 (29%), Positives = 12/24 (50%)

Query: 48 LPIEIGGRKGLDPTRFGDWEKNGI 71
          +P+E   R+G     FG  +  G+
Sbjct: 72 VPVEELARRGYQTLLFGPXKPVGL 95


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.313    0.131    0.371 

Gapped
Lambda     K      H
   0.267   0.0668    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 528,384
Number of extensions: 17324
Number of successful extensions: 32
Number of sequences better than 10.0: 1
Number of HSP's gapped: 31
Number of HSP's successfully gapped: 4
Length of query: 75
Length of database: 4,956,049
Length adjustment: 41
Effective length of query: 34
Effective length of database: 3,570,044
Effective search space: 121381496
Effective search space used: 121381496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 50 (23.2 bits)