BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780408|ref|YP_003064821.1| hypothetical protein
CLIBASIA_01465 [Candidatus Liberibacter asiaticus str. psy62]
         (75 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780408|ref|YP_003064821.1| hypothetical protein CLIBASIA_01465 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 75

 Score =  154 bits (388), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 75/75 (100%), Positives = 75/75 (100%)

Query: 1  MRTVQINIRGLMNNSTIKTSHDPLSSIAKRALEEAKQRKSANNKDAKLPIEIGGRKGLDP 60
          MRTVQINIRGLMNNSTIKTSHDPLSSIAKRALEEAKQRKSANNKDAKLPIEIGGRKGLDP
Sbjct: 1  MRTVQINIRGLMNNSTIKTSHDPLSSIAKRALEEAKQRKSANNKDAKLPIEIGGRKGLDP 60

Query: 61 TRFGDWEKNGISIDF 75
          TRFGDWEKNGISIDF
Sbjct: 61 TRFGDWEKNGISIDF 75


>gi|254780804|ref|YP_003065217.1| DNA polymerase III subunit delta [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 352

 Score = 22.3 bits (46), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 9/18 (50%), Positives = 10/18 (55%)

Query: 19 TSHDPLSSIAKRALEEAK 36
          T HDP S +   ALE  K
Sbjct: 48 TYHDPFSLVVLNALEIQK 65


>gi|254780444|ref|YP_003064857.1| bacteriophage repressor protein C1 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 223

 Score = 21.2 bits (43), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 2/48 (4%)

Query: 24 LSSIAKRALEEAKQRKSANNKDAKLPIEIGGRKGLDPTRFGDWEKNGI 71
          ++S + + + EA  R +  +     P  +  + GLDPT F   ++ GI
Sbjct: 1  MTSFSHKKIWEAIDRMAERHNLT--PSGLARKAGLDPTSFNKSKRFGI 46


>gi|254780655|ref|YP_003065068.1| transketolase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 673

 Score = 20.8 bits (42), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 7/9 (77%), Positives = 8/9 (88%)

Query: 66  WEKNGISID 74
           W+ NGISID
Sbjct: 195 WDNNGISID 203


>gi|255764490|ref|YP_003065085.2| dehydrogenase, E1 component [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 364

 Score = 20.4 bits (41), Expect = 5.5,   Method: Composition-based stats.
 Identities = 5/15 (33%), Positives = 13/15 (86%)

Query: 1   MRTVQINIRGLMNNS 15
           ++ +++N+R ++NNS
Sbjct: 329 LKEIEMNVRKIINNS 343


>gi|254780802|ref|YP_003065215.1| leucyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 869

 Score = 20.0 bits (40), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 7/14 (50%), Positives = 10/14 (71%)

Query: 43  NKDAKLPIEIGGRK 56
           N D  LPI++ G+K
Sbjct: 807 NTDIILPIQVNGKK 820


>gi|254781078|ref|YP_003065491.1| hypothetical protein CLIBASIA_04900 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 242

 Score = 19.6 bits (39), Expect = 9.2,   Method: Composition-based stats.
 Identities = 9/18 (50%), Positives = 11/18 (61%)

Query: 40  SANNKDAKLPIEIGGRKG 57
           S NN +AK  +E   RKG
Sbjct: 212 SVNNSNAKSDVERVDRKG 229


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.313    0.131    0.371 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,375
Number of Sequences: 1233
Number of extensions: 1502
Number of successful extensions: 7
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 75
length of database: 328,796
effective HSP length: 45
effective length of query: 30
effective length of database: 273,311
effective search space:  8199330
effective search space used:  8199330
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.0 bits)
S2: 31 (16.5 bits)