HHsearch alignment for GI: 254780410 and conserved domain: COG0030
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis].
Probab=96.19 E-value=0.026 Score=35.81 Aligned_cols=68 Identities=21% Similarity=0.364 Sum_probs=46.5
Q ss_pred CCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCH
Q ss_conf 88888888645767117999999999999999838887621410078646898887999974185643012102363697
Q gi|254780410|r 41 NPFGAVGDFVTAPEISQIFGEMLAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSE 120 (362)
Q Consensus 41 ~~~G~~GDF~Tsp~is~~Fg~~ia~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~ 120 (362)
T Consensus 6 K~~GQ--nFL~d~~v--------~---~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~----------~~~v~aiEiD~ 62 (259)
T COG0030 6 KRLGQ--NFLIDKNV--------I---DKIVEAANISPGDNVLEIGPGLGALTEPLLER----------AARVTAIEIDR 62 (259)
T ss_pred CCCCC--CCCCCHHH--------H---HHHHHHCCCCCCCEEEEECCCCCHHHHHHHHH----------CCEEEEEEECH
T ss_conf 77664--54147879--------9---99998557899986999789877889999960----------69579999688
Q ss_pred HHHHHHHHHHH
Q ss_conf 89999986411
Q gi|254780410|r 121 RLTLIQKKQLA 131 (362)
Q Consensus 121 ~l~~~Q~~~l~ 131 (362)
T Consensus 63 ~l~~~L~~~~~ 73 (259)
T COG0030 63 RLAEVLKERFA 73 (259)
T ss_pred HHHHHHHHHHC
T ss_conf 99999997506