HHsearch alignment for GI: 254780410 and conserved domain: COG0030

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis].
Probab=96.19  E-value=0.026  Score=35.81  Aligned_cols=68  Identities=21%  Similarity=0.364  Sum_probs=46.5

Q ss_pred             CCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCH
Q ss_conf             88888888645767117999999999999999838887621410078646898887999974185643012102363697
Q gi|254780410|r   41 NPFGAVGDFVTAPEISQIFGEMLAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSE  120 (362)
Q Consensus        41 ~~~G~~GDF~Tsp~is~~Fg~~ia~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~  120 (362)
T Consensus         6 K~~GQ--nFL~d~~v--------~---~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~----------~~~v~aiEiD~   62 (259)
T COG0030           6 KRLGQ--NFLIDKNV--------I---DKIVEAANISPGDNVLEIGPGLGALTEPLLER----------AARVTAIEIDR   62 (259)
T ss_pred             CCCCC--CCCCCHHH--------H---HHHHHHCCCCCCCEEEEECCCCCHHHHHHHHH----------CCEEEEEEECH
T ss_conf             77664--54147879--------9---99998557899986999789877889999960----------69579999688


Q ss_pred             HHHHHHHHHHH
Q ss_conf             89999986411
Q gi|254780410|r  121 RLTLIQKKQLA  131 (362)
Q Consensus       121 ~l~~~Q~~~l~  131 (362)
T Consensus        63 ~l~~~L~~~~~   73 (259)
T COG0030          63 RLAEVLKERFA   73 (259)
T ss_pred             HHHHHHHHHHC
T ss_conf             99999997506