HHsearch alignment for GI: 254780410 and conserved domain: COG2263
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis].
Probab=95.41 E-value=0.14 Score=30.86 Aligned_cols=84 Identities=14% Similarity=0.265 Sum_probs=54.8
Q ss_pred HHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHCCCCHHCC-CC
Q ss_conf 99999999983888762141007864689888799997418564301210236369789999986411102310110-43
Q gi|254780410|r 64 AIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASYGDKINWY-TS 142 (362)
Q Consensus 64 a~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~~~~v~w~-~~ 142 (362)
T Consensus 31 Aa~il~~a~~~g~l~g~~V~DlG~GTG~La~ga~---------~lGa~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~d 101 (198)
T COG2263 31 AAYILWVAYLRGDLEGKTVLDLGAGTGILAIGAA---------LLGASRVLAVDIDPEALEIARANAEELLGDVEFVVAD 101 (198)
T ss_pred HHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHH---------HCCCCEEEEEECCHHHHHHHHHHHHHHCCCEEEEECC
T ss_conf 9999999987388478888882788478899998---------6297179999369899999998888608846999821
Q ss_pred HHHCCCCCEEEEEE
Q ss_conf 44445695699981
Q gi|254780410|r 143 LADVPLGFTFLVAN 156 (362)
Q Consensus 143 l~~~~~~~~iiiaN 156 (362)
T Consensus 102 v~~~~~~~dtvimN 115 (198)
T COG2263 102 VSDFRGKFDTVIMN 115 (198)
T ss_pred HHHCCCCCCEEEEC
T ss_conf 01147766669978