HHsearch alignment for GI: 254780410 and conserved domain: COG2813

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis].
Probab=93.80  E-value=0.21  Score=29.63  Aligned_cols=100  Identities=23%  Similarity=0.326  Sum_probs=59.7

Q ss_pred             CCCCCEEECCCCCH----HHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECC
Q ss_conf             88888645767117----99999999999999983888762141007864689888799997418564301210236369
Q gi|254780410|r   44 GAVGDFVTAPEISQ----IFGEMLAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETS  119 (362)
Q Consensus        44 G~~GDF~Tsp~is~----~Fg~~ia~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s  119 (362)
T Consensus       126 ~~~~~~~t~pGVFS~~~lD~GS---~lLl~~---l~~~~~~~vlDlGCG~Gvlg~~la~~----~p~----~~vtmvDvn  191 (300)
T COG2813         126 GHELTFKTLPGVFSRDKLDKGS---RLLLET---LPPDLGGKVLDLGCGYGVLGLVLAKK----SPQ----AKLTLVDVN  191 (300)
T ss_pred             CCCEEEEECCCCCCCCCCCHHH---HHHHHH---CCCCCCCCEEEECCCCCHHHHHHHHH----CCC----CEEEEEECC
T ss_conf             6752699489877598868388---999973---77556996887078842999999986----898----728998266


Q ss_pred             HHHHHHHHHHHHHCCCC--HHCCCCHH-HCCCCCEEEEEEC
Q ss_conf             78999998641110231--01104344-4456956999812
Q gi|254780410|r  120 ERLTLIQKKQLASYGDK--INWYTSLA-DVPLGFTFLVANE  157 (362)
Q Consensus       120 ~~l~~~Q~~~l~~~~~~--v~w~~~l~-~~~~~~~iiiaNE  157 (362)
T Consensus       192 ~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v~~kfd~IisNP  232 (300)
T COG2813         192 ARAVESARKNLAANGVENTEVWASNLYEPVEGKFDLIISNP  232 (300)
T ss_pred             HHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCEEEECC
T ss_conf             99999988769973987637998124466544006898488