HHsearch alignment for GI: 254780410 and conserved domain: COG2813
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis].
Probab=93.80 E-value=0.21 Score=29.63 Aligned_cols=100 Identities=23% Similarity=0.326 Sum_probs=59.7
Q ss_pred CCCCCEEECCCCCH----HHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECC
Q ss_conf 88888645767117----99999999999999983888762141007864689888799997418564301210236369
Q gi|254780410|r 44 GAVGDFVTAPEISQ----IFGEMLAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETS 119 (362)
Q Consensus 44 G~~GDF~Tsp~is~----~Fg~~ia~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s 119 (362)
T Consensus 126 ~~~~~~~t~pGVFS~~~lD~GS---~lLl~~---l~~~~~~~vlDlGCG~Gvlg~~la~~----~p~----~~vtmvDvn 191 (300)
T COG2813 126 GHELTFKTLPGVFSRDKLDKGS---RLLLET---LPPDLGGKVLDLGCGYGVLGLVLAKK----SPQ----AKLTLVDVN 191 (300)
T ss_pred CCCEEEEECCCCCCCCCCCHHH---HHHHHH---CCCCCCCCEEEECCCCCHHHHHHHHH----CCC----CEEEEEECC
T ss_conf 6752699489877598868388---999973---77556996887078842999999986----898----728998266
Q ss_pred HHHHHHHHHHHHHCCCC--HHCCCCHH-HCCCCCEEEEEEC
Q ss_conf 78999998641110231--01104344-4456956999812
Q gi|254780410|r 120 ERLTLIQKKQLASYGDK--INWYTSLA-DVPLGFTFLVANE 157 (362)
Q Consensus 120 ~~l~~~Q~~~l~~~~~~--v~w~~~l~-~~~~~~~iiiaNE 157 (362)
T Consensus 192 ~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v~~kfd~IisNP 232 (300)
T COG2813 192 ARAVESARKNLAANGVENTEVWASNLYEPVEGKFDLIISNP 232 (300)
T ss_pred HHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCEEEECC
T ss_conf 99999988769973987637998124466544006898488