HHsearch alignment for GI: 254780410 and conserved domain: TIGR03534
>TIGR03534 RF_mod_HemK protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK, a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. However, the family is diverse enough that even many members of the seed alignment do not score above the seed alignment, which was set high enough to exclude all instances of PrmB.
Probab=96.36 E-value=0.024 Score=36.16 Aligned_cols=62 Identities=19% Similarity=0.308 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHCC
Q ss_conf 99999999999983888762141007864689888799997418564301210236369789999986411102
Q gi|254780410|r 61 EMLAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASYG 134 (362)
Q Consensus 61 ~~ia~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~~ 134 (362)
T Consensus 74 E~Lve~~l~~~~----~~~~~ilDlgtGSG~I~i~la~~~----~----~~~v~~~Dis~~Al~~A~~N~~~~~ 135 (251)
T TIGR03534 74 EELVEAALERLK----KGPLKVLDLGTGSGAIALALAKER----P----DARVTAVDISPEALAVARKNAKRLG 135 (251)
T ss_pred HHHHHHHHHHHC----CCCCEEEEECCCHHHHHHHHHHHC----C----CCEEEEEECCHHHHHHHHHHHHHCC
T ss_conf 999999999731----489869995567169999999967----9----9789999898799999999999809