HHsearch alignment for GI: 254780410 and conserved domain: pfam05185
>pfam05185 PRMT5 PRMT5 arginine-N-methyltransferase. The human homologue of yeast Skb1 (Shk1 kinase-binding protein 1) is PRMT5, an arginine-N-methyltransferase. These proteins appear to be key mitotic regulators. They play a role in Jak signalling in higher eukaryotes.
Probab=96.99 E-value=0.0083 Score=39.24 Aligned_cols=100 Identities=20% Similarity=0.327 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHHHHCCCC-CCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHH--HHCC
Q ss_conf 99999999999999983888-76214100786468988879999741856430121023636978999998641--1102
Q gi|254780410|r 58 IFGEMLAIFLICAWEQHGFP-SCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQL--ASYG 134 (362)
Q Consensus 58 ~Fg~~ia~~~~~~~~~~~~p-~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l--~~~~ 134 (362)
T Consensus 165 ~Ye~AI~~aL~D~~~~~~~~~~~~vI~VvGAGRGPLV~~~l~A~~~~~----~~v~i~AVEKNpnA~vtL~~r~n~~~W~ 240 (447)
T pfam05185 165 QYERAIRKALLDWVPEKKKTSGTLVILVVGAGRGPLVDRALRAAEETG----RKVKIYAVEKNPNAVVTLQKRVNFEEWG 240 (447)
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCC----CCEEEEEEECCHHHHHHHHHHHHHHHCC
T ss_conf 999999999986330013677756999985896489999999999819----9669999956877999999985054317
Q ss_pred CCHHCCC-CHHHC--CCCCEEEEEECCCCCC
Q ss_conf 3101104-34444--5695699981228875
Q gi|254780410|r 135 DKINWYT-SLADV--PLGFTFLVANEFFDSL 162 (362)
Q Consensus 135 ~~v~w~~-~l~~~--~~~~~iiiaNE~lDAl 162 (362)
T Consensus 241 ~~V~ii~~DMR~w~~p~k~Di~VS-ELLGSF 270 (447)
T pfam05185 241 DKVTLISSDMREWKGPEKADILVS-ELLGSF 270 (447)
T ss_pred CCEEEEECCHHCCCCCCCCCEEEE-ECCCCC
T ss_conf 806999080005799877358975-211666