HHsearch results for GI: 254780410 and protein with PDBid: 1fbn_A

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=94.93  E-value=0.032  Score=33.74  Aligned_cols=66  Identities=15%  Similarity=0.169  Sum_probs=44.5

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHH
Q ss_conf             7671179999999999999998388876214100786468988879999741856430121023636978999998641
Q gi|254780410|r   52 APEISQIFGEMLAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQL  130 (362)
Q Consensus        52 sp~is~~Fg~~ia~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l  130 (362)
                      .|--|.+     |..+..-.+.+.....-.|+++|+|+|+.+..+.+..    |    .-.++.||.||.+.+.-+++.
T Consensus        53 ~p~rskl-----~a~i~~~l~~l~ikpg~~VLDlGcGtG~~~~~la~~~----~----~G~V~aVDiSp~mi~~a~~~a  118 (230)
T 1fbn_A           53 NPNKSKL-----AAAIIKGLKVMPIKRDSKILYLGASAGTTPSHVADIA----D----KGIVYAIEYAPRIMRELLDAC  118 (230)
T ss_dssp             CTTTCHH-----HHHHHTTCCCCCCCTTCEEEEESCCSSHHHHHHHHHT----T----TSEEEEEESCHHHHHHHHHHT
T ss_pred             CCCCCHH-----HHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHC----C----CCEEEEEECCHHHHHHHHHHH
T ss_conf             8972589-----9999855762687999999996797798999999758----9----965999979989999999877