HHsearch results for GI: 254780410 and protein with PDBid: 1g8a_A

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 1pry_A

Probab=93.65  E-value=0.077  Score=31.17  Aligned_cols=75  Identities=13%  Similarity=0.105  Sum_probs=49.2

Q ss_pred             CCCEE--ECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHH
Q ss_conf             88864--5767117999999999999999838887621410078646898887999974185643012102363697899
Q gi|254780410|r   46 VGDFV--TAPEISQIFGEMLAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLT  123 (362)
Q Consensus        46 ~GDF~--Tsp~is~~Fg~~ia~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~  123 (362)
                      +|+.|  -.|--|.+     |..+..-.+.++....-.|+++|+|+|+.+..+.+...   |    .-.++.||.|+...
T Consensus        44 ~~~~~r~w~p~rskl-----~a~i~~~l~~l~i~pG~~VLDlG~G~G~~~~~la~~vg---~----~G~V~avD~s~~~l  111 (227)
T 1g8a_A           44 EGEEYRIWNPNRSKL-----GAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVG---W----EGKIFGIEFSPRVL  111 (227)
T ss_dssp             TTEEEEECCTTTCHH-----HHHHHTTCCCCCCCTTCEEEEETTTSTTHHHHHHHHHC---T----TSEEEEEESCHHHH
T ss_pred             CCCEEEEECCCHHHH-----HHHHHCCHHHCCCCCCCEEEEEECCCCHHHHHHHHHHC---C----CCEEEEEECCHHHH
T ss_conf             881799867853689-----99997035316989999999971787889999999848---9----96699998999999


Q ss_pred             HHHHHHHHH
Q ss_conf             999864111
Q gi|254780410|r  124 LIQKKQLAS  132 (362)
Q Consensus       124 ~~Q~~~l~~  132 (362)
                      +.-+++...
T Consensus       112 ~~l~~~~~~  120 (227)
T 1g8a_A          112 RELVPIVEE  120 (227)
T ss_dssp             HHHHHHHSS
T ss_pred             HHHHHHHHH
T ss_conf             999987876