HHsearch results for GI: 254780410 and protein with PDBid: 1i4w_A

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=96.75  E-value=0.0062  Score=38.62  Aligned_cols=73  Identities=15%  Similarity=0.247  Sum_probs=49.6

Q ss_pred             CCCCCCCEEECCCCCHHHHHHHHHHHHHHHH---HCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEEC
Q ss_conf             8888888645767117999999999999999---8388876214100786468988879999741856430121023636
Q gi|254780410|r   42 PFGAVGDFVTAPEISQIFGEMLAIFLICAWE---QHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVET  118 (362)
Q Consensus        42 ~~G~~GDF~Tsp~is~~Fg~~ia~~~~~~~~---~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~  118 (362)
                      .+|..  |..++.+..        .+++...   ....+++.+|+|+|||.|.|.+-+++..   .|     -+++++|+
T Consensus        29 ~~Gq~--fL~d~~l~~--------kIv~~l~l~~~~~~~~~~~IlEIgPG~G~lT~~Ll~~~---~p-----k~~i~iE~   90 (353)
T 1i4w_A           29 FYGFK--YLWNPTVYN--------KIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKY---CP-----RQYSLLEK   90 (353)
T ss_dssp             GGGCC--CBCCHHHHH--------HHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHH---CC-----SEEEEECC
T ss_pred             HHCHH--HCCCHHHHH--------HHHHHHCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHC---CC-----CEEEEEEC
T ss_conf             63544--438999999--------99987367633357789969998999889999998525---88-----76999977


Q ss_pred             CHHHHHHHHHHHHH
Q ss_conf             97899999864111
Q gi|254780410|r  119 SERLTLIQKKQLAS  132 (362)
Q Consensus       119 s~~l~~~Q~~~l~~  132 (362)
                      .+.+.+.-++.+..
T Consensus        91 D~~~~~~L~~~~~~  104 (353)
T 1i4w_A           91 RSSLYKFLNAKFEG  104 (353)
T ss_dssp             CHHHHHHHHHHTTT
T ss_pred             CHHHHHHHHHHHCC
T ss_conf             78899999987145