HHsearch results for GI: 254780410 and protein with PDBid: 1zkd_A
>1zkd_A DUF185; X-RAY, NESG, RPR58, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium; 2.10A {Rhodopseudomonas palustris CGA009} SCOP: c.66.1.52
Probab=100.00 E-value=0 Score=723.98 Aligned_cols=352 Identities=41% Similarity=0.668 Sum_probs=316.2
Q ss_pred CHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCE
Q ss_conf 84899999999981898049999998710898786468988888888645767117999999999999999838887621
Q gi|254780410|r 2 ENKLIRKIVNLIKKNGQMTVDQYFALCVADPEFGYYSTCNPFGAVGDFVTAPEISQIFGEMLAIFLICAWEQHGFPSCVR 81 (362)
Q Consensus 2 ~~~L~~~i~~~I~~~G~i~f~~fM~~aLy~p~~GYY~~~~~~G~~GDF~Tsp~is~~Fg~~ia~~~~~~~~~~~~p~~~~ 81 (362)
.++|.++|+++|+++|||||++||++|||||++|||+++++||++||||||||+||+||++||+|+.++|+.++.|++++
T Consensus 4 ~t~L~~~i~~~I~~~GpIsf~~fM~~aLy~p~~GYY~~~~~iG~~GDF~TSpeis~~FG~~ia~~~~~~~~~~~~p~~~~ 83 (387)
T 1zkd_A 4 QTALATEIKRLIKAAGPMPVWRYMELCLGHPEHGYYVTRDPLGREGDFTTSPEISQMFGELLGLWSASVWKAADEPQTLR 83 (387)
T ss_dssp SSHHHHHHHHHHHHHCSEEHHHHHHHHHHCTTTCTTTCC--------CCSHHHHCHHHHHHHHHHHHHHHHHTTCCSSEE
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCE
T ss_conf 41799999999995699579999999718998634478998889987468740579999999999999999759997716
Q ss_pred EEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHCCCCHHCCCCHHHCCCCCEEEEEECCCCC
Q ss_conf 41007864689888799997418564301210236369789999986411102310110434444569569998122887
Q gi|254780410|r 82 LVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASYGDKINWYTSLADVPLGFTFLVANEFFDS 161 (362)
Q Consensus 82 ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~~~~v~w~~~l~~~~~~~~iiiaNE~lDA 161 (362)
|||+|||+|+||+||++.++ ..|.++..++|++||+|+.|++.|+++|+.. .++.|+++++++|..++||+|||||||
T Consensus 84 ivE~GaG~G~L~~DIl~~~~-~~p~~~~~~~~~~vE~s~~Lr~~Q~~~L~~~-~~i~~~~~l~~~~~~~giiiANE~fDA 161 (387)
T 1zkd_A 84 LIEIGPGRGTMMADALRALR-VLPILYQSLSVHLVEINPVLRQKQQTLLAGI-RNIHWHDSFEDVPEGPAVILANEYFDV 161 (387)
T ss_dssp EEEECCTTSHHHHHHHHHHT-TSHHHHTTEEEEEECCCHHHHHHHHHHSTTC-SSEEEESSGGGSCCSSEEEEEESSGGG
T ss_pred EEEECCCCCHHHHHHHHHHH-HCHHHHHCCEEEEEECCHHHHHHHHHHHCCC-CCEEEECCHHHCCCCCCEEEECCCCCC
T ss_conf 99967982078998999986-4815441345899936878889999872477-740474142117788814761223566
Q ss_pred CCEEEEEEECCCCEEEEEEEEECCCEEECCCCCCCCCCCC---C-CCCCCCCCEECCCHHHHHHHHHHHHHHHHCCEEEE
Q ss_conf 5235899915664689989960795352257643432234---6-33165684112793478999999997620570599
Q gi|254780410|r 162 LPIKQFVMTEHGIRERMIDIDQHDSLVFNIGDHEIKSNFL---T-CSDYFLGAIFENSPCRDREMQSISDRLACDGGTAI 237 (362)
Q Consensus 162 lPv~~~~~~~~~w~E~~V~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~g~~~E~~~~~~~~~~~i~~~l~~~~G~~L 237 (362)
||||||++++++|+|++|++++++++.|...+.+.+.... . ....++|++.|+++....|.......+ ++|++|
T Consensus 162 lPv~~f~~~~~~w~E~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~~~~~~~~~--~~G~~L 239 (387)
T 1zkd_A 162 LPIHQAIKRETGWHERVIEIGASGELVFGVAADPIPGFEALLPPLARLSPPGAVFEWRPDTEILKIASRVRD--QGGAAL 239 (387)
T ss_dssp SCCEEEEEETTEEEEEEEEECTTSCEEEEECSSCCTTCGGGSCGGGGGCCTTCEEEECCSHHHHHHHHHHHH--HCEEEE
T ss_pred CCCEEEEECCCCEEEEEEECCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHH--CCCCEE
T ss_conf 650479984883378753216521045402568645578763244014888847860658999998899986--488678
Q ss_pred EECCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEECCEEHHHHHHHCCHHHHHHHHHHC
Q ss_conf 96243368588880776405767670001000345312688999999996898363323389999978979999998708
Q gi|254780410|r 238 VIDYGYLQSRVGDTLQAVKGHTYVSPLVNPGQADLSSHVDFQRLSSIAILYKLYINGLTTQGKFLEGLGIWQRAFSLMKQ 317 (362)
Q Consensus 238 ~iDYGy~~~r~~gTLr~y~~H~~~dpl~~pG~~DITahVnFs~L~~~a~~~g~~~~g~~sQ~~FL~~~GI~~r~~~l~~~ 317 (362)
+|||||...+.++|+|+|++|+++|||.+||+|||||||||++|+++++++|+++.|++||++||+++||.+|++.+.++
T Consensus 240 ~IDYG~~~~~~g~~l~~~~~h~~~d~l~~pG~~DITahVdFs~L~~~~~~~g~~~~g~~tQ~~FL~~~GI~er~~~l~~~ 319 (387)
T 1zkd_A 240 IIDYGHLRSDVGDTFQAIASHSYADPLQHPGRADLTAHVDFDALGRAAESIGARAHGPVTQGAFLKRLGIETRALSLMAK 319 (387)
T ss_dssp EEEEEESSCCBCCCCEEECSSSEECTTSSTTSSEEECCEEHHHHHHHHHHTTCEEEEEEEHHHHHHHTTHHHHHHHHHHT
T ss_pred EECCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEECCCCHHHHHHHCCHHHHHHHHHCC
T ss_conf 60332246765672556642545666468995626677498999999997799870645799999978999999999756
Q ss_pred CCCHH--HHHHHHHHHHHCCCCHH--HCCCEEEEEEEECCCCC-CCCCC
Q ss_conf 46279--99999999861468822--31632699998078888-99888
Q gi|254780410|r 318 TARKD--ILLDSVKRLVSTSADKK--SMGELFKILVVSHEKVE-LMPFV 361 (362)
Q Consensus 318 ~~~~~--~~~~~~~rli~~l~~p~--~MGe~FKVl~~sk~~~~-~~~f~ 361 (362)
.+... .+..+++||+ +|+ +|||+||||++|+++.+ +++|-
T Consensus 320 ~~~~~~~~l~~~~krLi----~p~~~~MGe~FKVL~is~~~~~~~~~~~ 364 (387)
T 1zkd_A 320 ATPQVSEDIAGALQRLT----GEGRGAMGSMFKVIGVSDPKIETLVALS 364 (387)
T ss_dssp SCHHHHHHHHHHHHHHH----CEETTEETTTEEEEEEECTTCCCCTTTT
T ss_pred CCHHHHHHHHHHHHHCC----CCCCCHHHHHEEEEEECCCCCCCCCCCC
T ss_conf 99899999999998625----9882101154789998279998777889