HHsearch results for GI: 254780410 and protein with PDBid: 2okc_A
>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, structural genomics; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45
Probab=93.91 E-value=0.23 Score=27.87 Aligned_cols=78 Identities=10% Similarity=0.079 Sum_probs=53.6
Q ss_pred CCCCEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHH-----HHCCCEEEEECC
Q ss_conf 888864576711799999999999999983888762141007864689888799997418564-----301210236369
Q gi|254780410|r 45 AVGDFVTAPEISQIFGEMLAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDF-----FSVLSIYMVETS 119 (362)
Q Consensus 45 ~~GDF~Tsp~is~~Fg~~ia~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~-----~~~l~~~ivE~s 119 (362)
..|-|+|-++|..+. +++. .......|++..+|+|.|...+.+.+....... ....+++-+|.+
T Consensus 149 ~~GqffTP~~Iv~~m--------v~ll---~~~~~~~IlDPacGsG~fL~~~~~~~~~~~~~~~~~~~~~~~~i~G~e~~ 217 (445)
T 2okc_A 149 GAGQYFTPRPLIQAM--------VDCI---NPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNT 217 (445)
T ss_dssp CCGGGCCCHHHHHHH--------HHHH---CCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESC
T ss_pred CCCEECCCHHHHHHH--------HHHC---CCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCEECEECC
T ss_conf 380465989999999--------9760---79999978127889766599999999873122777755301014234120
Q ss_pred HHHHHHHHHHHHHC
Q ss_conf 78999998641110
Q gi|254780410|r 120 ERLTLIQKKQLASY 133 (362)
Q Consensus 120 ~~l~~~Q~~~l~~~ 133 (362)
+......+.++.-+
T Consensus 218 ~~~~~la~~nl~l~ 231 (445)
T 2okc_A 218 PLVVTLASMNLYLH 231 (445)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCC
T ss_conf 99999999623102