HHsearch results for GI: 254780410 and protein with PDBid: 2vdw_A
>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}
Probab=96.23 E-value=0.073 Score=31.33 Aligned_cols=224 Identities=13% Similarity=0.184 Sum_probs=104.2
Q ss_pred HCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHH---CCCCCCCEEEEECCCCHHHHHHHHHHHHHCCH
Q ss_conf 108987864689888888886457671179999999999999998---38887621410078646898887999974185
Q gi|254780410|r 29 VADPEFGYYSTCNPFGAVGDFVTAPEISQIFGEMLAIFLICAWEQ---HGFPSCVRLVELGPGRGIMMLDILRVICKLKP 105 (362)
Q Consensus 29 Ly~p~~GYY~~~~~~G~~GDF~Tsp~is~~Fg~~ia~~~~~~~~~---~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p 105 (362)
.+.|+.+||+++..- +| +. .|---+-..+++.+-. ...+.+..|+++|.|+|. |+.++++.
T Consensus 6 ~~~~~~~y~~~~~~~--------~~-lr-~~~N~vK~~lI~~~~~~~~~~~~~~~~VLDlgcG~Gg---Dl~K~~~~--- 69 (302)
T 2vdw_A 6 RLNPEVSYFTNKRTR--------GP-LG-ILSNYVKTLLISMYCSKTFLDDSNKRKVLAIDFGNGA---DLEKYFYG--- 69 (302)
T ss_dssp CSSTTCCCBCSSCCC--------HH-HH-HHHHHHHHHHHHHHTCTTTSSCCSCCEEEETTCTTTT---THHHHHHT---
T ss_pred HCCCCCCCCCCCCCC--------CC-HH-HCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECH---HHHHHHHC---
T ss_conf 308654311036656--------86-36-4061889999999987750268889979999500045---27999966---
Q ss_pred HHHHCCCEEEEECCHHHHHHHHHHHHHCCCCHHCCCCHHHCCCCCEEEEEECCCCCCCEEEEEEECCCCEEEEEEEEECC
Q ss_conf 64301210236369789999986411102310110434444569569998122887523589991566468998996079
Q gi|254780410|r 106 DFFSVLSIYMVETSERLTLIQKKQLASYGDKINWYTSLADVPLGFTFLVANEFFDSLPIKQFVMTEHGIRERMIDIDQHD 185 (362)
Q Consensus 106 ~~~~~l~~~ivE~s~~l~~~Q~~~l~~~~~~v~w~~~l~~~~~~~~iiiaNE~lDAlPv~~~~~~~~~w~E~~V~~~~~~ 185 (362)
..-.|+-|++|+...+.-++|..+...+... ....+.+.-|++.+-.. ...+.+. ..++
T Consensus 70 ---~~~~vvGiDiS~~~I~~A~~R~~~~~~~~~~--------~~~~~~~~~~~~~~d~~------~~~~~~~----~~~~ 128 (302)
T 2vdw_A 70 ---EIALLVATDPDADAIARGNERYNKLNSGIKT--------KYYKFDYIQETIRSDTF------VSSVREV----FYFG 128 (302)
T ss_dssp ---TCSEEEEEESCHHHHHHHHHHHHHHCC------------CCCEEEEEECCTTSSSH------HHHHHTT----CCSS
T ss_pred ---CCCEEEEEECCHHHHHHHHHHHHHHCCCCCC--------CHHCCCCHHHHHHCCHH------HHHHHHH----CCCC
T ss_conf ---9988999979899999999999972124331--------00013305999861132------4445530----4789
Q ss_pred CEEECCCCCCCCCCCCCCCCCCCCCEECCCHHHHHHHHHHHHHHHHCCEEEEEECC-C-CCCCCCCC-EEE--E-EC---
Q ss_conf 53522576434322346331656841127934789999999976205705999624-3-36858888-077--6-40---
Q gi|254780410|r 186 SLVFNIGDHEIKSNFLTCSDYFLGAIFENSPCRDREMQSISDRLACDGGTAIVIDY-G-YLQSRVGD-TLQ--A-VK--- 256 (362)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~g~~~E~~~~~~~~~~~i~~~l~~~~G~~L~iDY-G-y~~~r~~g-TLr--~-y~--- 256 (362)
.+ ....+ .+.--+..+- ......++.+++.|+. +|.++.--+ | ........ .-. . +.
T Consensus 129 ~F-----------DvVs~-qfalHy~f~~-~~~~~~l~ni~~~Lkp-gG~fi~t~~~~~~i~~~l~~~~~~~~~~~~~~~ 194 (302)
T 2vdw_A 129 KF-----------NIIDW-QFAIHYSFHP-RHYATVMNNLSELTAS-GGKVLITTMDGDKLSKLTDKKTFIIHKNLPSSE 194 (302)
T ss_dssp CE-----------EEEEE-ESCGGGTCST-TTHHHHHHHHHHHEEE-EEEEEEEEECHHHHTTCCSCEEEECCSSSCTTT
T ss_pred CE-----------EEEEE-CCHHHHHCCC-HHHHHHHHHHHHHCCC-CCEEEEEECCHHHHHHHHHHCCCCCCEEEECCC
T ss_conf 75-----------69998-1406560885-8999999999961389-968999980699999998725777501222244
Q ss_pred ---------CCCCCCC-CCCCCCCCCC-CCCCHHHHHHHHHHCCCEEECCEEHHHHHHH
Q ss_conf ---------5767670-0010003453-1268899999999689836332338999997
Q gi|254780410|r 257 ---------GHTYVSP-LVNPGQADLS-SHVDFQRLSSIAILYKLYINGLTTQGKFLEG 304 (362)
Q Consensus 257 ---------~H~~~dp-l~~pG~~DIT-ahVnFs~L~~~a~~~g~~~~g~~sQ~~FL~~ 304 (362)
..+.... +...+ .+++ +-|+|+.|.+.+++.|++.+...+..+|+..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~-~~~~EyLV~~~~l~~l~~~~gl~lv~~~~F~~~~~~ 252 (302)
T 2vdw_A 195 NYMSVEKIADDRIVVYNPSTMS-TPMTEYIIKKNDIVRVFNEYGFVLVDNVDFATIIER 252 (302)
T ss_dssp SEEEECEEETTEEEEBCTTTBS-SCEEEECCCHHHHHHHHHHTTEEEEEEEEHHHHHHH
T ss_pred CCCCCCCCCCCCEEEEEECCCC-CCCHHHCCCHHHHHHHHHHCCCEEEEECCHHHHHHH
T ss_conf 4334667899878999834456-754654327999999999859899980687999987