HHsearch results for GI: 254780410 and protein with PDBid: 3khk_A
>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}
Probab=91.57 E-value=0.72 Score=24.51 Aligned_cols=78 Identities=21% Similarity=0.219 Sum_probs=53.8
Q ss_pred CCCCEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCC-------HHHHHCCCEEEEE
Q ss_conf 888864576711799999999999999983888762141007864689888799997418-------5643012102363
Q gi|254780410|r 45 AVGDFVTAPEISQIFGEMLAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLK-------PDFFSVLSIYMVE 117 (362)
Q Consensus 45 ~~GDF~Tsp~is~~Fg~~ia~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~-------p~~~~~l~~~ivE 117 (362)
+.|.|+|.++|..+.-+++ .|.+-.|++--.|+|.|.....+++.+.. .......+++=+|
T Consensus 223 ~~G~ffTP~~Iv~lmv~ll------------~p~~~~I~DPacGsGgfLi~a~~~i~~~~~~~~~~~~~~~~~~~l~G~E 290 (544)
T 3khk_A 223 QGGQYYTPKSIVTLIVEML------------EPYKGRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQE 290 (544)
T ss_dssp CSTTTCCCHHHHHHHHHHH------------CCCSEEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECC
T ss_pred CCCEECCCHHHHHHHHHCC------------CCCCCCEECCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHCEEECCC
T ss_conf 4765548189999998623------------8998837037777617899999999982452222202222011061503
Q ss_pred CCHHHHHHHHHHHHHCC
Q ss_conf 69789999986411102
Q gi|254780410|r 118 TSERLTLIQKKQLASYG 134 (362)
Q Consensus 118 ~s~~l~~~Q~~~l~~~~ 134 (362)
+++.....-+-++--++
T Consensus 291 i~~~~~~la~~nm~l~g 307 (544)
T 3khk_A 291 SNPTTWKLAAMNMVIRG 307 (544)
T ss_dssp CCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHCC
T ss_conf 87799999998898618