Query gi|254780410|ref|YP_003064823.1| hypothetical protein CLIBASIA_01475 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 362 No_of_seqs 135 out of 1570 Neff 7.1 Searched_HMMs 23785 Date Mon May 30 10:39:15 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780410.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 1zkd_A DUF185; X-RAY, NESG, RP 100.0 0 0 724.0 32.8 352 2-361 4-364 (387) 2 1wy7_A Hypothetical protein PH 97.5 0.00053 2.2E-08 46.0 8.7 95 46-157 25-120 (207) 3 3fut_A Dimethyladenosine trans 97.3 0.001 4.2E-08 44.0 8.2 86 18-134 7-92 (271) 4 1qam_A ERMC' methyltransferase 97.1 0.0019 8.1E-08 42.1 7.4 75 42-140 7-81 (244) 5 2aot_A HMT, histamine N-methyl 97.1 0.0024 1E-07 41.4 7.8 68 63-132 36-104 (292) 6 3gru_A Dimethyladenosine trans 97.1 0.0026 1.1E-07 41.2 8.0 70 40-132 25-94 (295) 7 1zq9_A Probable dimethyladenos 97.0 0.0037 1.6E-07 40.1 8.1 68 43-133 6-73 (285) 8 1yub_A Ermam, rRNA methyltrans 96.9 0.00036 1.5E-08 47.1 2.2 69 40-131 4-72 (245) 9 1ne2_A Hypothetical protein TA 96.8 0.008 3.3E-07 37.9 9.0 90 49-159 30-120 (200) 10 3dtn_A Putative methyltransfer 96.8 0.004 1.7E-07 40.0 7.4 78 77-163 43-123 (234) 11 1wzn_A SAM-dependent methyltra 96.8 0.012 4.9E-07 36.8 9.7 67 64-140 27-93 (252) 12 2h1r_A Dimethyladenosine trans 96.8 0.0018 7.5E-08 42.3 5.4 66 43-131 20-85 (299) 13 1i4w_A Mitochondrial replicati 96.7 0.0062 2.6E-07 38.6 7.8 73 42-132 29-104 (353) 14 1qyr_A KSGA, high level kasuga 96.7 0.0027 1.1E-07 41.1 5.9 84 64-166 10-102 (252) 15 1xtp_A LMAJ004091AAA; SGPP, st 96.7 0.013 5.3E-07 36.5 9.2 156 68-301 83-241 (254) 16 3bus_A REBM, methyltransferase 96.7 0.021 8.7E-07 35.0 10.2 174 59-297 42-215 (273) 17 3ftd_A Dimethyladenosine trans 96.7 0.0052 2.2E-07 39.2 6.9 67 40-128 6-72 (249) 18 3gu3_A Methyltransferase; alph 96.6 0.0031 1.3E-07 40.7 5.6 81 76-163 20-103 (284) 19 2f8l_A Hypothetical protein LM 96.6 0.012 5.1E-07 36.7 8.4 104 44-157 103-209 (344) 20 3dh0_A SAM dependent methyltra 96.6 0.0071 3E-07 38.3 7.2 150 71-297 30-180 (219) 21 1im8_A YECO; methyltransferase 96.5 0.01 4.3E-07 37.2 7.8 83 45-134 16-108 (244) 22 3iv6_A Putative Zn-dependent a 96.5 0.0081 3.4E-07 37.9 7.3 79 75-163 42-124 (261) 23 1ve3_A Hypothetical protein PH 96.5 0.016 6.6E-07 35.9 8.7 61 67-138 28-88 (227) 24 3dlc_A Putative S-adenosyl-L-m 96.5 0.0091 3.8E-07 37.5 7.2 65 63-140 32-98 (219) 25 3hnr_A Probable methyltransfer 96.5 0.0064 2.7E-07 38.5 6.3 44 78-131 45-88 (220) 26 1dl5_A Protein-L-isoaspartate 96.4 0.023 9.8E-07 34.7 8.7 89 69-164 66-159 (317) 27 3ou2_A SAM-dependent methyltra 96.4 0.02 8.5E-07 35.1 8.4 61 58-128 25-86 (218) 28 2yqz_A Hypothetical protein TT 96.4 0.0079 3.3E-07 37.9 6.3 53 78-140 39-91 (263) 29 1xxl_A YCGJ protein; structura 96.4 0.013 5.5E-07 36.4 7.4 56 68-133 11-66 (239) 30 2o57_A Putative sarcosine dime 96.4 0.028 1.2E-06 34.1 9.1 160 73-302 77-238 (297) 31 2p35_A Trans-aconitate 2-methy 96.3 0.0043 1.8E-07 39.7 4.9 84 68-163 23-109 (259) 32 3m70_A Tellurite resistance pr 96.3 0.011 4.8E-07 36.8 7.0 81 74-164 116-199 (286) 33 2ex4_A Adrenal gland protein A 96.3 0.011 4.7E-07 36.9 6.7 49 76-133 77-125 (241) 34 3g5t_A Trans-aconitate 3-methy 96.2 0.027 1.1E-06 34.3 8.5 66 52-132 18-83 (299) 35 2vdw_A Vaccinia virus capping 96.2 0.073 3.1E-06 31.3 19.6 224 29-304 6-252 (302) 36 2b3t_A Protein methyltransfera 96.2 0.037 1.6E-06 33.3 9.1 75 48-134 81-157 (276) 37 3ccf_A Cyclopropane-fatty-acyl 96.2 0.0031 1.3E-07 40.7 3.4 47 75-131 54-100 (279) 38 1nv8_A HEMK protein; class I a 96.2 0.05 2.1E-06 32.4 9.5 63 60-134 108-170 (284) 39 1vl5_A Unknown conserved prote 96.1 0.017 7.3E-07 35.6 7.0 54 70-133 29-82 (260) 40 3h2b_A SAM-dependent methyltra 96.0 0.046 1.9E-06 32.7 8.9 41 81-131 44-84 (203) 41 2p8j_A S-adenosylmethionine-de 96.0 0.013 5.3E-07 36.5 5.8 76 79-163 24-103 (209) 42 3cc8_A Putative methyltransfer 95.9 0.012 5.3E-07 36.6 5.6 42 78-129 32-73 (230) 43 3mgg_A Methyltransferase; NYSG 95.9 0.036 1.5E-06 33.4 7.8 54 70-131 29-82 (276) 44 2pxx_A Uncharacterized protein 95.8 0.013 5.3E-07 36.5 5.2 118 77-243 41-162 (215) 45 2i6g_A Putative methyltransfer 95.8 0.042 1.8E-06 32.9 7.9 50 74-133 27-76 (199) 46 3grz_A L11 mtase, ribosomal pr 95.8 0.035 1.5E-06 33.5 7.4 95 56-160 36-136 (205) 47 1dus_A MJ0882; hypothetical pr 95.8 0.027 1.1E-06 34.2 6.8 74 44-133 20-97 (194) 48 2b25_A Hypothetical protein; s 95.8 0.058 2.4E-06 32.0 8.5 57 71-134 98-154 (336) 49 1jg1_A PIMT;, protein-L-isoasp 95.8 0.071 3E-06 31.4 8.9 136 8-165 23-174 (235) 50 3f4k_A Putative methyltransfer 95.8 0.048 2E-06 32.6 8.0 56 76-140 44-101 (257) 51 2gs9_A Hypothetical protein TT 95.7 0.078 3.3E-06 31.1 8.9 60 58-130 17-76 (211) 52 1i1n_A Protein-L-isoaspartate 95.6 0.11 4.8E-06 30.0 9.5 105 10-133 13-125 (226) 53 2fk8_A Methoxy mycolic acid sy 95.6 0.11 4.5E-06 30.1 9.4 61 64-133 76-136 (318) 54 1vbf_A 231AA long hypothetical 95.6 0.087 3.6E-06 30.8 8.8 66 46-132 49-114 (231) 55 3dmg_A Probable ribosomal RNA 95.6 0.044 1.8E-06 32.8 7.2 43 80-132 235-277 (381) 56 3g5l_A Putative S-adenosylmeth 95.6 0.051 2.2E-06 32.4 7.5 44 78-130 44-87 (253) 57 1yb2_A Hypothetical protein TA 95.6 0.017 7.1E-07 35.7 5.1 59 69-134 101-159 (275) 58 1o54_A SAM-dependent O-methylt 95.6 0.084 3.5E-06 30.9 8.6 58 70-134 104-161 (277) 59 3ofk_A Nodulation protein S; N 95.5 0.064 2.7E-06 31.7 7.9 80 72-162 45-127 (216) 60 1y8c_A S-adenosylmethionine-de 95.5 0.059 2.5E-06 32.0 7.5 65 64-139 24-88 (246) 61 3jwh_A HEN1; methyltransferase 95.4 0.098 4.1E-06 30.4 8.6 92 63-165 17-118 (217) 62 1nkv_A Hypothetical protein YJ 95.4 0.11 4.8E-06 30.0 8.7 152 74-296 32-185 (256) 63 3kkz_A Uncharacterized protein 95.3 0.035 1.5E-06 33.5 6.0 49 76-133 44-92 (267) 64 2p7i_A Hypothetical protein; p 95.3 0.052 2.2E-06 32.3 6.7 53 67-131 33-85 (250) 65 2avn_A Ubiquinone/menaquinone 95.0 0.058 2.4E-06 32.0 6.4 44 76-129 52-95 (260) 66 3l8d_A Methyltransferase; stru 95.0 0.077 3.2E-06 31.2 7.0 44 77-130 52-95 (242) 67 3mb5_A SAM-dependent methyltra 95.0 0.075 3.2E-06 31.2 6.9 94 33-134 30-142 (255) 68 3gdh_A Trimethylguanosine synt 95.0 0.16 6.6E-06 29.0 8.5 68 61-140 63-132 (241) 69 1u2z_A Histone-lysine N-methyl 94.9 0.017 7.2E-07 35.6 3.5 74 58-139 222-295 (433) 70 1fbn_A MJ fibrillarin homologu 94.9 0.032 1.4E-06 33.7 4.9 66 52-130 53-118 (230) 71 3bkw_A MLL3908 protein, S-aden 94.9 0.11 4.6E-06 30.1 7.6 83 25-129 2-85 (243) 72 3gjy_A Spermidine synthase; AP 94.9 0.13 5.3E-06 29.7 7.8 64 59-130 70-133 (317) 73 3eey_A Putative rRNA methylase 94.8 0.22 9.4E-06 28.0 9.1 65 68-140 13-79 (197) 74 3bxo_A N,N-dimethyltransferase 94.8 0.22 9.4E-06 28.0 9.0 55 65-130 28-82 (239) 75 3e8s_A Putative SAM dependent 94.8 0.043 1.8E-06 32.9 5.3 45 78-132 52-96 (227) 76 1xva_A Glycine N-methyltransfe 94.8 0.16 6.6E-06 29.0 8.1 85 35-132 3-100 (292) 77 1i9g_A Hypothetical protein RV 94.8 0.09 3.8E-06 30.7 6.9 58 69-133 90-147 (280) 78 3jwg_A HEN1, methyltransferase 94.8 0.099 4.1E-06 30.4 7.0 88 67-165 21-118 (219) 79 2pwy_A TRNA (adenine-N(1)-)-me 94.8 0.1 4.2E-06 30.4 7.1 58 70-134 88-145 (258) 80 3ndi_A Methyltransferase; S-ad 94.7 0.2 8.3E-06 28.3 8.5 229 55-307 84-340 (416) 81 3cgg_A SAM-dependent methyltra 94.7 0.082 3.4E-06 31.0 6.5 45 77-131 45-89 (195) 82 1p91_A Ribosomal RNA large sub 94.7 0.13 5.6E-06 29.5 7.6 61 63-131 70-130 (269) 83 3ege_A Putative methyltransfer 94.6 0.042 1.8E-06 33.0 4.8 80 69-163 25-108 (261) 84 3id6_C Fibrillarin-like rRNA/T 94.6 0.048 2E-06 32.5 5.1 67 52-130 55-121 (232) 85 3i9f_A Putative type 11 methyl 94.6 0.081 3.4E-06 31.0 6.2 43 79-131 18-60 (170) 86 1r18_A Protein-L-isoaspartate( 94.5 0.14 6E-06 29.3 7.3 113 8-133 18-137 (227) 87 1ri5_A MRNA capping enzyme; me 94.5 0.27 1.1E-05 27.5 14.2 60 64-132 50-109 (298) 88 3evz_A Methyltransferase; NYSG 94.5 0.17 7E-06 28.9 7.6 75 74-156 51-130 (230) 89 1l3i_A Precorrin-6Y methyltran 94.5 0.13 5.4E-06 29.6 7.0 57 74-140 29-87 (192) 90 2pbf_A Protein-L-isoaspartate 94.4 0.039 1.6E-06 33.2 4.3 92 29-133 41-132 (227) 91 1zx0_A Guanidinoacetate N-meth 94.4 0.058 2.4E-06 32.0 5.1 53 76-137 58-110 (236) 92 2ipx_A RRNA 2'-O-methyltransfe 94.4 0.046 1.9E-06 32.7 4.6 69 52-132 56-124 (233) 93 3e23_A Uncharacterized protein 94.4 0.12 4.9E-06 30.0 6.6 46 76-131 41-86 (211) 94 3lcc_A Putative methyl chlorid 94.3 0.13 5.3E-06 29.7 6.7 54 69-133 58-111 (235) 95 3m33_A Uncharacterized protein 94.3 0.12 5.2E-06 29.8 6.6 65 49-132 28-92 (226) 96 3fzg_A 16S rRNA methylase; met 94.3 0.067 2.8E-06 31.6 5.2 77 78-162 49-128 (200) 97 3b3f_A Histone-arginine methyl 94.2 0.21 8.7E-06 28.2 7.6 75 79-164 47-126 (341) 98 3lpm_A Putative methyltransfer 94.1 0.12 5E-06 29.9 6.2 71 78-157 49-127 (259) 99 2yvl_A TRMI protein, hypotheti 94.0 0.18 7.5E-06 28.7 7.0 101 30-140 29-145 (248) 100 2okc_A Type I restriction enzy 93.9 0.23 9.8E-06 27.9 7.4 78 45-133 149-231 (445) 101 3d2l_A SAM-dependent methyltra 93.8 0.2 8.3E-06 28.4 6.9 50 79-139 34-83 (243) 102 2yxe_A Protein-L-isoaspartate 93.8 0.22 9.1E-06 28.1 7.1 74 42-134 53-126 (215) 103 2yxd_A Probable cobalt-precorr 93.8 0.18 7.7E-06 28.6 6.6 96 45-167 6-104 (183) 104 1g8a_A Fibrillarin-like PRE-rR 93.6 0.077 3.2E-06 31.2 4.5 75 46-132 44-120 (227) 105 3i53_A O-methyltransferase; CO 93.6 0.37 1.5E-05 26.5 8.0 150 78-296 169-319 (332) 106 3c3p_A Methyltransferase; NP_9 93.5 0.21 8.9E-06 28.2 6.7 73 53-139 38-112 (210) 107 3lcv_B Sisomicin-gentamicin re 93.4 0.029 1.2E-06 34.1 2.0 80 76-163 130-212 (281) 108 3dr5_A Putative O-methyltransf 93.3 0.39 1.7E-05 26.3 7.7 77 53-140 35-114 (221) 109 1qzz_A RDMB, aclacinomycin-10- 93.3 0.45 1.9E-05 25.9 8.0 149 77-295 181-336 (374) 110 3dli_A Methyltransferase; PSI- 93.2 0.24 1E-05 27.8 6.5 42 79-130 42-83 (240) 111 3e05_A Precorrin-6Y C5,15-meth 93.1 0.25 1.1E-05 27.6 6.5 55 72-134 34-88 (204) 112 2r3s_A Uncharacterized protein 93.1 0.48 2E-05 25.7 8.2 47 76-131 163-209 (335) 113 3duw_A OMT, O-methyltransferas 93.0 0.24 1E-05 27.7 6.3 67 54-134 41-107 (223) 114 1or8_A Protein arginine N-meth 92.8 0.23 9.6E-06 27.9 6.0 75 80-165 59-139 (340) 115 2nxc_A L11 mtase, ribosomal pr 92.8 0.31 1.3E-05 27.0 6.6 61 65-136 108-168 (254) 116 2fyt_A Protein arginine N-meth 92.7 0.48 2E-05 25.7 7.5 76 79-164 65-145 (340) 117 2esr_A Methyltransferase; stru 92.7 0.37 1.5E-05 26.5 6.9 68 50-133 10-77 (177) 118 2gpy_A O-methyltransferase; st 92.7 0.47 2E-05 25.8 7.4 67 53-134 36-102 (233) 119 2ip2_A Probable phenazine-spec 92.6 0.35 1.5E-05 26.7 6.6 110 79-246 168-278 (334) 120 3hem_A Cyclopropane-fatty-acyl 92.5 0.56 2.4E-05 25.2 9.8 210 12-296 19-241 (302) 121 1kpg_A CFA synthase;, cyclopro 92.5 0.56 2.4E-05 25.2 9.4 173 60-297 46-227 (287) 122 3hvi_A Catechol O-methyltransf 92.5 0.27 1.1E-05 27.4 6.0 73 53-139 40-114 (221) 123 1tw3_A COMT, carminomycin 4-O- 92.4 0.5 2.1E-05 25.6 7.2 114 75-245 180-293 (360) 124 1nw3_A Histone methyltransfera 92.3 0.093 3.9E-06 30.6 3.4 72 59-138 136-207 (416) 125 1pjz_A Thiopurine S-methyltran 92.3 0.35 1.5E-05 26.6 6.3 57 67-133 11-67 (203) 126 3bkx_A SAM-dependent methyltra 92.3 0.61 2.5E-05 25.0 7.8 173 68-295 33-216 (275) 127 1yzh_A TRNA (guanine-N(7)-)-me 92.1 0.3 1.3E-05 27.1 5.8 48 75-131 39-86 (214) 128 2fca_A TRNA (guanine-N(7)-)-me 92.0 0.3 1.2E-05 27.2 5.7 48 76-132 37-84 (213) 129 2ozv_A Hypothetical protein AT 91.8 0.59 2.5E-05 25.1 7.0 73 77-157 35-123 (260) 130 1nt2_A Fibrillarin-like PRE-rR 91.8 0.25 1.1E-05 27.6 5.1 67 52-132 37-103 (210) 131 2ih2_A Modification methylase 91.7 0.076 3.2E-06 31.2 2.4 60 46-123 18-77 (421) 132 3khk_A Type I restriction-modi 91.6 0.72 3E-05 24.5 7.7 78 45-134 223-307 (544) 133 1vlm_A SAM-dependent methyltra 91.5 0.28 1.2E-05 27.3 5.1 34 81-128 50-83 (219) 134 1x19_A CRTF-related protein; m 91.4 0.75 3.2E-05 24.4 9.3 72 51-131 159-234 (359) 135 1g6q_1 HnRNP arginine N-methyl 91.3 0.76 3.2E-05 24.3 8.7 74 80-163 40-119 (328) 136 3ggd_A SAM-dependent methyltra 91.2 0.58 2.4E-05 25.2 6.4 44 78-131 56-99 (245) 137 3ckk_A TRNA (guanine-N(7)-)-me 90.5 0.47 2E-05 25.8 5.5 50 72-129 40-89 (235) 138 3b3j_A Histone-arginine methyl 90.4 0.92 3.9E-05 23.8 7.0 73 79-162 159-236 (480) 139 3hm2_A Precorrin-6Y C5,15-meth 90.2 0.65 2.7E-05 24.8 6.0 55 72-134 19-73 (178) 140 3gwz_A MMCR; methyltransferase 90.1 0.97 4.1E-05 23.6 9.3 135 52-243 172-310 (369) 141 3ocj_A Putative exported prote 90.1 0.97 4.1E-05 23.6 6.9 48 79-133 119-166 (305) 142 3lbf_A Protein-L-isoaspartate 90.0 0.99 4.2E-05 23.6 10.5 109 2-133 4-122 (210) 143 2fhp_A Methylase, putative; al 89.8 0.65 2.7E-05 24.8 5.7 83 34-133 8-90 (187) 144 2kw5_A SLR1183 protein; struct 89.8 0.46 1.9E-05 25.8 4.9 50 80-139 31-80 (202) 145 3lkd_A Type I restriction-modi 89.7 0.58 2.4E-05 25.2 5.4 74 45-131 195-269 (542) 146 3kr9_A SAM-dependent methyltra 89.7 1.1 4.4E-05 23.4 6.9 51 76-134 13-63 (225) 147 2i62_A Nicotinamide N-methyltr 89.3 0.67 2.8E-05 24.7 5.5 58 75-141 53-110 (265) 148 3frh_A 16S rRNA methylase; met 89.1 0.4 1.7E-05 26.3 4.2 102 48-163 77-182 (253) 149 3dp7_A SAM-dependent methyltra 89.0 1.2 4.9E-05 23.1 7.2 51 72-131 173-223 (363) 150 3mcz_A O-methyltransferase; ad 89.0 1.2 5E-05 23.1 8.5 145 46-246 143-293 (352) 151 3bgv_A MRNA CAP guanine-N7 met 88.7 1.2 5.2E-05 22.9 12.7 183 76-303 32-237 (313) 152 2a14_A Indolethylamine N-methy 88.5 0.3 1.3E-05 27.1 3.3 66 65-139 39-107 (263) 153 3adn_A Spermidine synthase; am 88.4 1.3 5.4E-05 22.8 6.7 78 42-132 48-129 (294) 154 2vdv_E TRNA (guanine-N(7)-)-me 88.3 0.98 4.1E-05 23.6 5.7 48 76-131 47-94 (246) 155 1xj5_A Spermidine synthase 1; 88.0 1.3 5.7E-05 22.6 6.4 78 42-132 85-166 (334) 156 3c3y_A Pfomt, O-methyltransfer 87.8 1.4 5.9E-05 22.6 7.0 67 54-134 53-119 (237) 157 3g2m_A PCZA361.24; SAM-depende 87.7 0.54 2.3E-05 25.4 4.1 49 76-134 80-128 (299) 158 3lst_A CALO1 methyltransferase 87.5 1 4.3E-05 23.5 5.5 132 52-244 154-290 (348) 159 1ws6_A Methyltransferase; stru 87.1 1.5 6.4E-05 22.3 7.0 68 51-134 20-87 (171) 160 3lec_A NADB-rossmann superfami 86.9 1.6 6.6E-05 22.2 7.1 51 76-134 19-69 (230) 161 2hnk_A SAM-dependent O-methylt 86.7 1.6 6.7E-05 22.1 7.5 73 53-139 42-116 (239) 162 3dxy_A TRNA (guanine-N(7)-)-me 86.6 1.4 5.8E-05 22.6 5.7 47 76-131 33-79 (218) 163 3fpf_A Mtnas, putative unchara 86.6 1.6 6.8E-05 22.1 7.4 56 71-134 115-170 (298) 164 3g07_A 7SK snRNA methylphospha 86.3 1.1 4.5E-05 23.3 5.0 48 78-133 46-93 (292) 165 2avd_A Catechol-O-methyltransf 85.4 1.6 6.8E-05 22.1 5.6 68 53-134 51-118 (229) 166 3cbg_A O-methyltransferase; cy 84.6 2 8.5E-05 21.5 6.2 72 54-139 55-128 (232) 167 1uir_A Polyamine aminopropyltr 84.6 1.7 7.2E-05 21.9 5.4 74 46-132 50-123 (314) 168 2i7c_A Spermidine synthase; tr 84.5 2 8.5E-05 21.5 6.2 78 42-132 43-124 (283) 169 2h00_A Methyltransferase 10 do 83.5 2.2 9.3E-05 21.2 7.2 60 66-133 51-112 (254) 170 2qy6_A UPF0209 protein YFCK; s 83.4 2.2 9.4E-05 21.1 5.8 82 47-131 27-117 (257) 171 1mjf_A Spermidine synthase; sp 83.2 2.3 9.6E-05 21.1 6.7 72 46-131 48-119 (281) 172 3p2e_A 16S rRNA methylase; met 83.0 1.1 4.5E-05 23.4 3.8 48 74-130 21-68 (225) 173 2qfm_A Spermine synthase; sper 82.9 1.4 5.7E-05 22.6 4.3 75 42-132 155-233 (364) 174 3bwc_A Spermidine synthase; SA 82.6 2.4 0.0001 20.9 6.7 79 42-133 60-142 (304) 175 1iy9_A Spermidine synthase; ro 82.1 2.5 0.00011 20.8 6.9 74 46-132 48-121 (275) 176 2pt6_A Spermidine synthase; tr 82.1 2.5 0.00011 20.8 6.9 78 42-132 81-162 (321) 177 3mti_A RRNA methylase; SAM-dep 82.1 2.5 0.00011 20.8 8.6 53 76-139 21-74 (185) 178 3gnl_A Uncharacterized protein 81.8 2.4 0.0001 20.9 5.2 55 77-139 20-76 (244) 179 1inl_A Spermidine synthase; be 81.3 2.7 0.00011 20.6 6.6 78 42-132 55-136 (296) 180 2ar0_A M.ecoki, type I restric 79.1 3.1 0.00013 20.1 10.9 75 45-130 147-231 (541) 181 2b2c_A Spermidine synthase; be 78.2 2 8.6E-05 21.4 3.9 78 42-132 73-154 (314) 182 2e58_A MNMC2; tRNA wobble urid 78.2 3.3 0.00014 20.0 6.4 91 27-120 36-136 (308) 183 2cmg_A Spermidine synthase; tr 78.1 1.6 6.6E-05 22.2 3.3 75 42-132 38-116 (262) 184 2g72_A Phenylethanolamine N-me 77.5 0.92 3.9E-05 23.8 2.0 63 67-139 61-123 (289) 185 1sui_A Caffeoyl-COA O-methyltr 75.6 3.9 0.00016 19.5 7.2 68 53-134 61-128 (247) 186 2frn_A Hypothetical protein PH 75.5 3 0.00013 20.3 4.1 44 80-132 127-170 (278) 187 2o07_A Spermidine synthase; st 75.3 4 0.00017 19.5 6.2 78 42-132 60-141 (304) 188 3a27_A TYW2, uncharacterized p 72.2 4.7 0.0002 19.0 6.7 49 75-132 117-165 (272) 189 2qm3_A Predicted methyltransfe 69.5 5.3 0.00022 18.6 8.4 65 60-134 155-219 (373) 190 3bzb_A Uncharacterized protein 69.3 2.1 8.7E-05 21.4 2.1 64 55-130 52-123 (281) 191 2py6_A Methyltransferase FKBM; 69.2 5.4 0.00023 18.5 5.1 48 79-132 227-274 (409) 192 3g89_A Ribosomal RNA small sub 63.9 6.8 0.00029 17.8 8.5 138 1-158 10-160 (249) 193 1htw_A HI0065; nucleotide-bind 63.5 6.9 0.00029 17.8 4.2 63 50-117 8-72 (158) 194 2zfu_A Nucleomethylin, cerebra 57.3 4.2 0.00018 19.2 1.9 22 75-96 64-85 (215) 195 3htx_A HEN1; HEN1, small RNA m 54.9 9.6 0.0004 16.8 4.0 160 66-239 712-894 (950) 196 2ift_A Putative methylase HI07 52.7 10 0.00044 16.6 7.2 68 50-133 32-99 (201) 197 2yx1_A Hypothetical protein MJ 51.8 11 0.00045 16.5 5.0 16 212-227 222-237 (336) 198 2gb4_A Thiopurine S-methyltran 51.1 11 0.00046 16.4 5.8 60 53-130 50-110 (252) 199 2fpo_A Methylase YHHF; structu 50.2 11 0.00048 16.3 7.0 68 49-132 32-99 (202) 200 1jsx_A Glucose-inhibited divis 49.4 12 0.00049 16.2 6.9 74 63-146 50-127 (207) 201 2ofk_A 3-methyladenine DNA gly 48.7 7.9 0.00033 17.4 2.2 31 277-307 141-171 (183) 202 1kyz_A COMT, caffeic acid 3-O- 43.2 14 0.00061 15.6 6.0 60 52-119 169-233 (365) 203 1gjy_A Sorcin, CP-22, V19; cal 43.1 14 0.0006 15.7 2.8 13 15-27 14-26 (167) 204 2qe6_A Uncharacterized protein 38.8 17 0.0007 15.2 3.4 46 81-133 80-127 (274) 205 1k94_A Grancalcin; penta-EF-ha 36.8 18 0.00076 14.9 3.4 12 15-26 12-23 (165) 206 3mag_A VP39; methylated adenin 36.4 18 0.00077 14.9 5.0 52 65-120 47-98 (307) 207 1vpt_A VP39; RNA CAP, poly(A) 35.2 19 0.0008 14.8 5.0 52 65-120 62-113 (348) 208 2jg6_A DNA-3-methyladenine gly 34.1 17 0.00072 15.1 2.0 29 279-307 143-171 (186) 209 3cvo_A Methyltransferase-like 29.1 24 0.001 14.1 5.9 42 80-132 32-73 (202) 210 2w6a_A ARF GTPase-activating p 29.0 20 0.00085 14.6 1.7 11 292-302 6-16 (63) 211 1zg3_A Isoflavanone 4'-O-methy 28.6 24 0.001 14.1 2.4 31 80-118 195-225 (358) 212 1fp2_A Isoflavone O-methytrans 27.6 25 0.0011 13.9 3.4 33 78-118 188-220 (352) 213 1sfu_A 34L protein; protein/Z- 26.9 20 0.00086 14.6 1.4 28 46-73 26-56 (75) 214 1fp1_D Isoliquiritigenin 2'-O- 25.8 27 0.0011 13.7 4.9 59 52-118 178-241 (372) 215 2zwa_A Leucine carboxyl methyl 25.4 28 0.0012 13.7 4.8 79 52-131 78-159 (695) 216 3k89_A Malonyl COA-ACP transac 25.2 26 0.0011 13.9 1.7 27 271-297 252-281 (314) 217 2as0_A Hypothetical protein PH 23.2 30 0.0013 13.4 7.3 54 34-90 51-108 (396) 218 2bm8_A Cephalosporin hydroxyla 22.8 31 0.0013 13.3 4.8 38 79-120 82-119 (236) 219 2qc3_A MCT, malonyl COA-acyl c 22.7 28 0.0012 13.6 1.5 22 271-292 244-265 (303) 220 1wxx_A TT1595, hypothetical pr 22.6 31 0.0013 13.3 6.6 19 5-23 5-23 (382) 221 2kax_A Protein S100-A5; EF-han 21.5 33 0.0014 13.2 2.1 13 1-13 1-13 (92) 222 2ec1_A Nucleoporin 50 kDa; ran 21.5 33 0.0014 13.2 3.0 18 164-181 20-37 (125) 223 2kvs_A Uncharacterized protein 21.3 22 0.00093 14.3 0.7 13 15-27 2-14 (80) No 1 >1zkd_A DUF185; X-RAY, NESG, RPR58, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium; 2.10A {Rhodopseudomonas palustris CGA009} SCOP: c.66.1.52 Probab=100.00 E-value=0 Score=723.98 Aligned_cols=352 Identities=41% Similarity=0.668 Sum_probs=316.2 Q ss_pred CHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCE Q ss_conf 84899999999981898049999998710898786468988888888645767117999999999999999838887621 Q gi|254780410|r 2 ENKLIRKIVNLIKKNGQMTVDQYFALCVADPEFGYYSTCNPFGAVGDFVTAPEISQIFGEMLAIFLICAWEQHGFPSCVR 81 (362) Q Consensus 2 ~~~L~~~i~~~I~~~G~i~f~~fM~~aLy~p~~GYY~~~~~~G~~GDF~Tsp~is~~Fg~~ia~~~~~~~~~~~~p~~~~ 81 (362) .++|.++|+++|+++|||||++||++|||||++|||+++++||++||||||||+||+||++||+|+.++|+.++.|++++ T Consensus 4 ~t~L~~~i~~~I~~~GpIsf~~fM~~aLy~p~~GYY~~~~~iG~~GDF~TSpeis~~FG~~ia~~~~~~~~~~~~p~~~~ 83 (387) T 1zkd_A 4 QTALATEIKRLIKAAGPMPVWRYMELCLGHPEHGYYVTRDPLGREGDFTTSPEISQMFGELLGLWSASVWKAADEPQTLR 83 (387) T ss_dssp SSHHHHHHHHHHHHHCSEEHHHHHHHHHHCTTTCTTTCC--------CCSHHHHCHHHHHHHHHHHHHHHHHTTCCSSEE T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCE T ss_conf 41799999999995699579999999718998634478998889987468740579999999999999999759997716 Q ss_pred EEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHCCCCHHCCCCHHHCCCCCEEEEEECCCCC Q ss_conf 41007864689888799997418564301210236369789999986411102310110434444569569998122887 Q gi|254780410|r 82 LVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASYGDKINWYTSLADVPLGFTFLVANEFFDS 161 (362) Q Consensus 82 ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~~~~v~w~~~l~~~~~~~~iiiaNE~lDA 161 (362) |||+|||+|+||+||++.++ ..|.++..++|++||+|+.|++.|+++|+.. .++.|+++++++|..++||+||||||| T Consensus 84 ivE~GaG~G~L~~DIl~~~~-~~p~~~~~~~~~~vE~s~~Lr~~Q~~~L~~~-~~i~~~~~l~~~~~~~giiiANE~fDA 161 (387) T 1zkd_A 84 LIEIGPGRGTMMADALRALR-VLPILYQSLSVHLVEINPVLRQKQQTLLAGI-RNIHWHDSFEDVPEGPAVILANEYFDV 161 (387) T ss_dssp EEEECCTTSHHHHHHHHHHT-TSHHHHTTEEEEEECCCHHHHHHHHHHSTTC-SSEEEESSGGGSCCSSEEEEEESSGGG T ss_pred EEEECCCCCHHHHHHHHHHH-HCHHHHHCCEEEEEECCHHHHHHHHHHHCCC-CCEEEECCHHHCCCCCCEEEECCCCCC T ss_conf 99967982078998999986-4815441345899936878889999872477-740474142117788814761223566 Q ss_pred CCEEEEEEECCCCEEEEEEEEECCCEEECCCCCCCCCCCC---C-CCCCCCCCEECCCHHHHHHHHHHHHHHHHCCEEEE Q ss_conf 5235899915664689989960795352257643432234---6-33165684112793478999999997620570599 Q gi|254780410|r 162 LPIKQFVMTEHGIRERMIDIDQHDSLVFNIGDHEIKSNFL---T-CSDYFLGAIFENSPCRDREMQSISDRLACDGGTAI 237 (362) Q Consensus 162 lPv~~~~~~~~~w~E~~V~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~g~~~E~~~~~~~~~~~i~~~l~~~~G~~L 237 (362) ||||||++++++|+|++|++++++++.|...+.+.+.... . ....++|++.|+++....|.......+ ++|++| T Consensus 162 lPv~~f~~~~~~w~E~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~~~~~~~~~--~~G~~L 239 (387) T 1zkd_A 162 LPIHQAIKRETGWHERVIEIGASGELVFGVAADPIPGFEALLPPLARLSPPGAVFEWRPDTEILKIASRVRD--QGGAAL 239 (387) T ss_dssp SCCEEEEEETTEEEEEEEEECTTSCEEEEECSSCCTTCGGGSCGGGGGCCTTCEEEECCSHHHHHHHHHHHH--HCEEEE T ss_pred CCCEEEEECCCCEEEEEEECCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHH--CCCCEE T ss_conf 650479984883378753216521045402568645578763244014888847860658999998899986--488678 Q ss_pred EECCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEECCEEHHHHHHHCCHHHHHHHHHHC Q ss_conf 96243368588880776405767670001000345312688999999996898363323389999978979999998708 Q gi|254780410|r 238 VIDYGYLQSRVGDTLQAVKGHTYVSPLVNPGQADLSSHVDFQRLSSIAILYKLYINGLTTQGKFLEGLGIWQRAFSLMKQ 317 (362) Q Consensus 238 ~iDYGy~~~r~~gTLr~y~~H~~~dpl~~pG~~DITahVnFs~L~~~a~~~g~~~~g~~sQ~~FL~~~GI~~r~~~l~~~ 317 (362) +|||||...+.++|+|+|++|+++|||.+||+|||||||||++|+++++++|+++.|++||++||+++||.+|++.+.++ T Consensus 240 ~IDYG~~~~~~g~~l~~~~~h~~~d~l~~pG~~DITahVdFs~L~~~~~~~g~~~~g~~tQ~~FL~~~GI~er~~~l~~~ 319 (387) T 1zkd_A 240 IIDYGHLRSDVGDTFQAIASHSYADPLQHPGRADLTAHVDFDALGRAAESIGARAHGPVTQGAFLKRLGIETRALSLMAK 319 (387) T ss_dssp EEEEEESSCCBCCCCEEECSSSEECTTSSTTSSEEECCEEHHHHHHHHHHTTCEEEEEEEHHHHHHHTTHHHHHHHHHHT T ss_pred EECCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEECCCCHHHHHHHCCHHHHHHHHHCC T ss_conf 60332246765672556642545666468995626677498999999997799870645799999978999999999756 Q ss_pred CCCHH--HHHHHHHHHHHCCCCHH--HCCCEEEEEEEECCCCC-CCCCC Q ss_conf 46279--99999999861468822--31632699998078888-99888 Q gi|254780410|r 318 TARKD--ILLDSVKRLVSTSADKK--SMGELFKILVVSHEKVE-LMPFV 361 (362) Q Consensus 318 ~~~~~--~~~~~~~rli~~l~~p~--~MGe~FKVl~~sk~~~~-~~~f~ 361 (362) .+... .+..+++||+ +|+ +|||+||||++|+++.+ +++|- T Consensus 320 ~~~~~~~~l~~~~krLi----~p~~~~MGe~FKVL~is~~~~~~~~~~~ 364 (387) T 1zkd_A 320 ATPQVSEDIAGALQRLT----GEGRGAMGSMFKVIGVSDPKIETLVALS 364 (387) T ss_dssp SCHHHHHHHHHHHHHHH----CEETTEETTTEEEEEEECTTCCCCTTTT T ss_pred CCHHHHHHHHHHHHHCC----CCCCCHHHHHEEEEEECCCCCCCCCCCC T ss_conf 99899999999998625----9882101154789998279998777889 No 2 >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structural genomics; HET: SAH; 2.20A {Pyrococcus horikoshii OT3} SCOP: c.66.1.32 Probab=97.52 E-value=0.00053 Score=45.95 Aligned_cols=95 Identities=15% Similarity=0.217 Sum_probs=58.8 Q ss_pred CCCEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHH Q ss_conf 88864576711799999999999999983888762141007864689888799997418564301210236369789999 Q gi|254780410|r 46 VGDFVTAPEISQIFGEMLAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLI 125 (362) Q Consensus 46 ~GDF~Tsp~is~~Fg~~ia~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~ 125 (362) -+.|.|.|++ |..++..-...|.-+.-.|+++|+|+|.|+...+.. ...+.+.+|+++...+. T Consensus 25 l~q~~Tp~~i--------a~~~~~~a~~~~dl~g~~vlDlg~G~G~l~i~a~~~---------g~~~v~~vDid~~~~~~ 87 (207) T 1wy7_A 25 LEQYRTPGNA--------ASELLWLAYSLGDIEGKVVADLGAGTGVLSYGALLL---------GAKEVICVEVDKEAVDV 87 (207) T ss_dssp GTCCCCCHHH--------HHHHHHHHHHTTSSTTCEEEEETCTTCHHHHHHHHT---------TCSEEEEEESCHHHHHH T ss_pred CCCCCCCHHH--------HHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHC---------CCCEEEEECCCHHHHHH T ss_conf 1137999999--------999999998649879898999134256999999974---------99869998798999999 Q ss_pred HHHHHHHCCCCHHCCC-CHHHCCCCCEEEEEEC Q ss_conf 9864111023101104-3444456956999812 Q gi|254780410|r 126 QKKQLASYGDKINWYT-SLADVPLGFTFLVANE 157 (362) Q Consensus 126 Q~~~l~~~~~~v~w~~-~l~~~~~~~~iiiaNE 157 (362) -++++...+.++.++. +..+.+..+.+|++|- T Consensus 88 a~~N~~~~~~~~~~~~~d~~~~~~~~D~ii~np 120 (207) T 1wy7_A 88 LIENLGEFKGKFKVFIGDVSEFNSRVDIVIMNP 120 (207) T ss_dssp HHHHTGGGTTSEEEEESCGGGCCCCCSEEEECC T ss_pred HHHHHHHCCCCCEEEECCHHHHHCCCCEEECCC T ss_conf 999999839982799766788614654644488 No 3 >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus HB8} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* Probab=97.33 E-value=0.001 Score=44.04 Aligned_cols=86 Identities=20% Similarity=0.342 Sum_probs=56.4 Q ss_pred CCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHH Q ss_conf 80499999987108987864689888888886457671179999999999999998388876214100786468988879 Q gi|254780410|r 18 QMTVDQYFALCVADPEFGYYSTCNPFGAVGDFVTAPEISQIFGEMLAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDIL 97 (362) Q Consensus 18 ~i~f~~fM~~aLy~p~~GYY~~~~~~G~~GDF~Tsp~is~~Fg~~ia~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL 97 (362) |-+..++|+. +|.+.++ .+|. .|..++.+-. .+++. .+ +.+-.|+|+|||.|.|...++ T Consensus 7 p~~~r~~l~~------~~~~~kK-~lGQ--nFL~d~~i~~--------~iv~~---~~-~~~~~VlEIGpG~G~LT~~L~ 65 (271) T 3fut_A 7 PQSVRALLER------HGLFADK-RFGQ--NFLVSEAHLR--------RIVEA---AR-PFTGPVFEVGPGLGALTRALL 65 (271) T ss_dssp HHHHHHHHHH------TTCCCST-TSSC--CEECCHHHHH--------HHHHH---HC-CCCSCEEEECCTTSHHHHHHH T ss_pred HHHHHHHHHH------CCCCCCC-CCCC--CCCCCHHHHH--------HHHHH---HC-CCCCCEEEECCCCCHHHHHHH T ss_conf 7999999997------6999887-7784--5038989999--------99996---58-999988996797719999999 Q ss_pred HHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHCC Q ss_conf 9997418564301210236369789999986411102 Q gi|254780410|r 98 RVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASYG 134 (362) Q Consensus 98 ~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~~ 134 (362) +. ...++.||+-+.+....++++.... T Consensus 66 ~~----------~~~v~avE~D~~l~~~L~~~~~~~~ 92 (271) T 3fut_A 66 EA----------GAEVTAIEKDLRLRPVLEETLSGLP 92 (271) T ss_dssp HT----------TCCEEEEESCGGGHHHHHHHTTTSS T ss_pred HC----------CCCEEEEEECHHHHHHHHHHHHHCC T ss_conf 60----------8967999837067888875433301 No 4 >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A Probab=97.06 E-value=0.0019 Score=42.09 Aligned_cols=75 Identities=15% Similarity=0.248 Sum_probs=49.8 Q ss_pred CCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHH Q ss_conf 88888886457671179999999999999998388876214100786468988879999741856430121023636978 Q gi|254780410|r 42 PFGAVGDFVTAPEISQIFGEMLAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSER 121 (362) Q Consensus 42 ~~G~~GDF~Tsp~is~~Fg~~ia~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~ 121 (362) ++|. .|.+.+.+ . ..+.+..+....-.|+|+|||.|.|..-+++. ..+++.||+.+. T Consensus 7 k~GQ--nFL~d~~i--------~---~~Iv~~~~~~~~d~VlEIGpG~G~LT~~L~~~----------~~~v~avEiD~~ 63 (244) T 1qam_A 7 KHSQ--NFITSKHN--------I---DKIMTNIRLNEHDNIFEIGSGKGHFTLELVQR----------CNFVTAIEIDHK 63 (244) T ss_dssp ---C--CBCCCHHH--------H---HHHHTTCCCCTTCEEEEECCTTSHHHHHHHHH----------SSEEEEECSCHH T ss_pred CCCC--CCCCCHHH--------H---HHHHHHCCCCCCCEEEEECCCCCHHHHHHHHC----------CCCEEEEEECHH T ss_conf 8888--41479999--------9---99999567899997999738871999999855----------583069985301 Q ss_pred HHHHHHHHHHHCCCCHHCC Q ss_conf 9999986411102310110 Q gi|254780410|r 122 LTLIQKKQLASYGDKINWY 140 (362) Q Consensus 122 l~~~Q~~~l~~~~~~v~w~ 140 (362) +.+.-+++..+. .++..+ T Consensus 64 l~~~L~~~~~~~-~n~~ii 81 (244) T 1qam_A 64 LCKTTENKLVDH-DNFQVL 81 (244) T ss_dssp HHHHHHHHTTTC-CSEEEE T ss_pred HHHHHHHHHCCC-CCEEEE T ss_conf 779999741447-765773 No 5 >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* Probab=97.06 E-value=0.0024 Score=41.42 Aligned_cols=68 Identities=22% Similarity=0.220 Sum_probs=47.0 Q ss_pred HHHHHHHHHHHCCC-CCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHH Q ss_conf 99999999998388-87621410078646898887999974185643012102363697899999864111 Q gi|254780410|r 63 LAIFLICAWEQHGF-PSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLAS 132 (362) Q Consensus 63 ia~~~~~~~~~~~~-p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~ 132 (362) +...+......++. .+.++|+|+|+|+|.++..|++.+....+. ...++..||+|+.+.+.-+++++. T Consensus 36 ~~~~l~~~l~~~~~~~~~~~VLdiGcG~G~~~~~il~~l~~~~~~--~~~~~~~vD~s~~~l~~ak~~~~~ 104 (292) T 2aot_A 36 MDKKLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPG--VCINNEVVEPSAEQIAKYKELVAK 104 (292) T ss_dssp HHHTHHHHSSSTTTTCSEEEEEEETCTTSHHHHHHHHHHHHHSTT--CEEEEEEECSCHHHHHHHHHHHHT T ss_pred HHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCC--CCCEEEEEECCHHHHHHHHHHHHH T ss_conf 999999999985167999869998797997789999988874478--777599998988999999999887 No 6 >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assembly S-adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* Probab=97.05 E-value=0.0026 Score=41.23 Aligned_cols=70 Identities=16% Similarity=0.259 Sum_probs=47.0 Q ss_pred CCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECC Q ss_conf 98888888864576711799999999999999983888762141007864689888799997418564301210236369 Q gi|254780410|r 40 CNPFGAVGDFVTAPEISQIFGEMLAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETS 119 (362) Q Consensus 40 ~~~~G~~GDF~Tsp~is~~Fg~~ia~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s 119 (362) +..+|. .|.+.+.+ ...+++ ..+....-.|+|+|||.|.|...+++. .-+++.||+. T Consensus 25 kK~lGQ--NFL~d~~i--------~~kIv~---~~~~~~~d~VlEIGpG~G~LT~~Ll~~----------~~~v~aiEiD 81 (295) T 3gru_A 25 KKKLGQ--CFLIDKNF--------VNKAVE---SANLTKDDVVLEIGLGKGILTEELAKN----------AKKVYVIEID 81 (295) T ss_dssp -----C--CEECCHHH--------HHHHHH---HTTCCTTCEEEEECCTTSHHHHHHHHH----------SSEEEEEESC T ss_pred CCCCCC--CCCCCHHH--------HHHHHH---HCCCCCCCEEEEECCCHHHHHHHHHHC----------CCCEEEEEEC T ss_conf 887782--30289999--------999999---638999995999799746999999816----------8966999988 Q ss_pred HHHHHHHHHHHHH Q ss_conf 7899999864111 Q gi|254780410|r 120 ERLTLIQKKQLAS 132 (362) Q Consensus 120 ~~l~~~Q~~~l~~ 132 (362) +.|.+.-+++... T Consensus 82 ~~l~~~L~~~~~~ 94 (295) T 3gru_A 82 KSLEPYANKLKEL 94 (295) T ss_dssp GGGHHHHHHHHHH T ss_pred HHHHHHHHHHHHH T ss_conf 7999999976764 No 7 >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 Probab=96.97 E-value=0.0037 Score=40.14 Aligned_cols=68 Identities=22% Similarity=0.368 Sum_probs=47.7 Q ss_pred CCCCCCEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHH Q ss_conf 88888864576711799999999999999983888762141007864689888799997418564301210236369789 Q gi|254780410|r 43 FGAVGDFVTAPEISQIFGEMLAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERL 122 (362) Q Consensus 43 ~G~~GDF~Tsp~is~~Fg~~ia~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l 122 (362) +|. .|.+.+.+ +..++ ...+..+.-.|+|+|||.|.|...+++. ..+++.||+.+.+ T Consensus 6 LGQ--nFL~d~~i--------~~~Iv---~~~~~~~~d~VlEIGPG~G~LT~~Ll~~----------~~~v~aiE~D~~l 62 (285) T 1zq9_A 6 IGQ--HILKNPLI--------INSII---DKAALRPTDVVLEVGPGTGNMTVKLLEK----------AKKVVACELDPRL 62 (285) T ss_dssp --C--CEECCHHH--------HHHHH---HHTCCCTTCEEEEECCTTSTTHHHHHHH----------SSEEEEEESCHHH T ss_pred CCC--CCCCCHHH--------HHHHH---HHHCCCCCCEEEEECCCCHHHHHHHHHC----------CCCEEEEEECHHH T ss_conf 684--60779899--------99999---9708999997999689721999999804----------9966999987899 Q ss_pred HHHHHHHHHHC Q ss_conf 99998641110 Q gi|254780410|r 123 TLIQKKQLASY 133 (362) Q Consensus 123 ~~~Q~~~l~~~ 133 (362) .+.-++++... T Consensus 63 ~~~L~~~~~~~ 73 (285) T 1zq9_A 63 VAELHKRVQGT 73 (285) T ss_dssp HHHHHHHHTTS T ss_pred HHHHHHHHHCC T ss_conf 99999876201 No 8 >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 Probab=96.86 E-value=0.00036 Score=47.10 Aligned_cols=69 Identities=14% Similarity=0.294 Sum_probs=47.2 Q ss_pred CCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECC Q ss_conf 98888888864576711799999999999999983888762141007864689888799997418564301210236369 Q gi|254780410|r 40 CNPFGAVGDFVTAPEISQIFGEMLAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETS 119 (362) Q Consensus 40 ~~~~G~~GDF~Tsp~is~~Fg~~ia~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s 119 (362) ..++|. .|.+.+.+-. .+.+..+..+.-.|+|+|||.|.|..-+++. ..+++.||+. T Consensus 4 ~~k~GQ--nFL~d~~i~~-----------~Iv~~~~~~~~d~VlEIGpG~G~LT~~L~~~----------~~~v~aiE~D 60 (245) T 1yub_A 4 NIKYSQ--NFLTSEKVLN-----------QIIKQLNLKETDTVYEIGTGKGHLTTKLAKI----------SKQVTSIELD 60 (245) T ss_dssp CCCSCC--CBCCCTTTHH-----------HHHHHCCCCSSEEEEECSCCCSSCSHHHHHH----------SSEEEESSSS T ss_pred CCCCCC--CCCCCHHHHH-----------HHHHHCCCCCCCEEEEECCCHHHHHHHHHHC----------CCCCEEECCC T ss_conf 988787--1478989999-----------9999458999996899799735999999961----------6500403404 Q ss_pred HHHHHHHHHHHH Q ss_conf 789999986411 Q gi|254780410|r 120 ERLTLIQKKQLA 131 (362) Q Consensus 120 ~~l~~~Q~~~l~ 131 (362) +.|.+.-+++++ T Consensus 61 ~~l~~~l~~~~~ 72 (245) T 1yub_A 61 SHLFNLSSEKLK 72 (245) T ss_dssp CSSSSSSSCTTT T ss_pred HHHHHHHHHHHH T ss_conf 466898875541 No 9 >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 Probab=96.85 E-value=0.008 Score=37.90 Aligned_cols=90 Identities=18% Similarity=0.291 Sum_probs=56.0 Q ss_pred EEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHH Q ss_conf 64576711799999999999999983888762141007864689888799997418564301210236369789999986 Q gi|254780410|r 49 FVTAPEISQIFGEMLAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKK 128 (362) Q Consensus 49 F~Tsp~is~~Fg~~ia~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~ 128 (362) |.|.+++ -|.++.... ..|.-+.-.|+++|+|+|.|+...+. . ..-+.+.+|.|+...+.-++ T Consensus 30 Y~t~~~i-------aa~~~~~~~-~~gd~~Gk~VLDlGcGtG~l~i~a~~----~-----ga~~V~~vDid~~a~~~a~~ 92 (200) T 1ne2_A 30 YPTDAST-------AAYFLIEIY-NDGNIGGRSVIDAGTGNGILACGSYL----L-----GAESVTAFDIDPDAIETAKR 92 (200) T ss_dssp CCCCHHH-------HHHHHHHHH-HHTSSBTSEEEEETCTTCHHHHHHHH----T-----TBSEEEEEESCHHHHHHHHH T ss_pred CCCCHHH-------HHHHHHHHH-HCCCCCCCEEEECCCCHHHHHHHHHH----C-----CCCEEEEEECCHHHHHHHHH T ss_conf 7998899-------999999998-66998939899875751099999996----7-----99879675089999999999 Q ss_pred HHHHCCCCHHCC-CCHHHCCCCCEEEEEECCC Q ss_conf 411102310110-4344445695699981228 Q gi|254780410|r 129 QLASYGDKINWY-TSLADVPLGFTFLVANEFF 159 (362) Q Consensus 129 ~l~~~~~~v~w~-~~l~~~~~~~~iiiaNE~l 159 (362) ++. ++.|+ .++.+++....+||+|==| T Consensus 93 N~~----~~~~~~~d~~~~~~~fD~Vi~NPPf 120 (200) T 1ne2_A 93 NCG----GVNFMVADVSEISGKYDTWIMNPPF 120 (200) T ss_dssp HCT----TSEEEECCGGGCCCCEEEEEECCCC T ss_pred HHH----HCCCEEEEHHHCCCCCCEEEECCCC T ss_conf 898----5785376521057754889877986 No 10 >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Probab=96.84 E-value=0.004 Score=39.96 Aligned_cols=78 Identities=17% Similarity=0.334 Sum_probs=49.9 Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHCCCCHHCCC-CHHHCC--CCCEEE Q ss_conf 87621410078646898887999974185643012102363697899999864111023101104-344445--695699 Q gi|254780410|r 77 PSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASYGDKINWYT-SLADVP--LGFTFL 153 (362) Q Consensus 77 p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~~~~v~w~~-~l~~~~--~~~~ii 153 (362) +.+..|+|+|+|+|.++..+++. .|+ .+++.+|.|+.+.+..+++++.. .+|.++. ++.+.+ ....+| T Consensus 43 ~~~~~VLDiGcG~G~~~~~l~~~----~~~----~~v~giD~s~~~l~~A~~~~~~~-~~v~~~~~D~~~~~~~~~fD~I 113 (234) T 3dtn_A 43 TENPDILDLGAGTGLLSAFLMEK----YPE----ATFTLVDMSEKMLEIAKNRFRGN-LKVKYIEADYSKYDFEEKYDMV 113 (234) T ss_dssp CSSCEEEEETCTTSHHHHHHHHH----CTT----CEEEEEESCHHHHHHHHHHTCSC-TTEEEEESCTTTCCCCSCEEEE T ss_pred CCCCEEEEECCCCCHHHHHHHHH----CCC----CEEEEEECCHHHHHHHHHHHHCC-CCEEEEEEECCCCCCCCCHHHH T ss_conf 99995999817685999999998----899----68999958504578999863027-7624774200134544551345 Q ss_pred EEECCCCCCC Q ss_conf 9812288752 Q gi|254780410|r 154 VANEFFDSLP 163 (362) Q Consensus 154 iaNE~lDAlP 163 (362) +++.+|-.+| T Consensus 114 ~~~~~l~~l~ 123 (234) T 3dtn_A 114 VSALSIHHLE 123 (234) T ss_dssp EEESCGGGSC T ss_pred HHHHHHHCCC T ss_conf 5577787089 No 11 >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii OT3} SCOP: c.66.1.43 Probab=96.83 E-value=0.012 Score=36.75 Aligned_cols=67 Identities=15% Similarity=0.243 Sum_probs=48.7 Q ss_pred HHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHCCCCHHCC Q ss_conf 99999999983888762141007864689888799997418564301210236369789999986411102310110 Q gi|254780410|r 64 AIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASYGDKINWY 140 (362) Q Consensus 64 a~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~~~~v~w~ 140 (362) ..++..++++.+....-.|+|+|+|+|.++..+.+. ..+++-||.|+.+.+.-++++++...++.++ T Consensus 27 ~~~~~~~~~~~~~~~~~~ILDiGcGtG~~~~~l~~~----------g~~v~gvD~s~~ml~~a~~~~~~~~~~~~~~ 93 (252) T 1wzn_A 27 IDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAER----------GYEVVGLDLHEEMLRVARRKAKERNLKIEFL 93 (252) T ss_dssp HHHHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHT----------TCEEEEEESCHHHHHHHHHHHHHTTCCCEEE T ss_pred HHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHC----------CCEEEEEECCHHHHHHHHHHHHHCCCCCEEE T ss_conf 999999999735789898999547586999999976----------9989999746889999999776428752368 No 12 >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} Probab=96.80 E-value=0.0018 Score=42.34 Aligned_cols=66 Identities=21% Similarity=0.315 Sum_probs=45.4 Q ss_pred CCCCCCEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHH Q ss_conf 88888864576711799999999999999983888762141007864689888799997418564301210236369789 Q gi|254780410|r 43 FGAVGDFVTAPEISQIFGEMLAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERL 122 (362) Q Consensus 43 ~G~~GDF~Tsp~is~~Fg~~ia~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l 122 (362) +|. .|.+.+.+ ...+++. .+..+.=.|+|+|||.|.|...+++. ..+++.||+.+.+ T Consensus 20 LGQ--nFL~D~~i--------~~kIv~~---~~~~~~d~VLEIGPG~G~LT~~Ll~~----------~~~v~aiE~D~~l 76 (299) T 2h1r_A 20 QGQ--HLLKNPGI--------LDKIIYA---AKIKSSDIVLEIGCGTGNLTVKLLPL----------AKKVITIDIDSRM 76 (299) T ss_dssp -----CEECCHHH--------HHHHHHH---HCCCTTCEEEEECCTTSTTHHHHTTT----------SSEEEEECSCHHH T ss_pred CCC--CCCCCHHH--------HHHHHHH---CCCCCCCEEEEECCCHHHHHHHHHHC----------CCEEEEEECCCHH T ss_conf 777--43789899--------9999984---58999898999689727999999823----------9907999777089 Q ss_pred HHHHHHHHH Q ss_conf 999986411 Q gi|254780410|r 123 TLIQKKQLA 131 (362) Q Consensus 123 ~~~Q~~~l~ 131 (362) .+.-++.+. T Consensus 77 ~~~L~e~~~ 85 (299) T 2h1r_A 77 ISEVKKRCL 85 (299) T ss_dssp HHHHHHHHH T ss_pred HHHHHHHHH T ss_conf 999997543 No 13 >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 Probab=96.75 E-value=0.0062 Score=38.62 Aligned_cols=73 Identities=15% Similarity=0.247 Sum_probs=49.6 Q ss_pred CCCCCCCEEECCCCCHHHHHHHHHHHHHHHH---HCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEEC Q ss_conf 8888888645767117999999999999999---8388876214100786468988879999741856430121023636 Q gi|254780410|r 42 PFGAVGDFVTAPEISQIFGEMLAIFLICAWE---QHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVET 118 (362) Q Consensus 42 ~~G~~GDF~Tsp~is~~Fg~~ia~~~~~~~~---~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~ 118 (362) .+|.. |..++.+.. .+++... ....+++.+|+|+|||.|.|.+-+++.. .| -+++++|+ T Consensus 29 ~~Gq~--fL~d~~l~~--------kIv~~l~l~~~~~~~~~~~IlEIgPG~G~lT~~Ll~~~---~p-----k~~i~iE~ 90 (353) T 1i4w_A 29 FYGFK--YLWNPTVYN--------KIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKY---CP-----RQYSLLEK 90 (353) T ss_dssp GGGCC--CBCCHHHHH--------HHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHH---CC-----SEEEEECC T ss_pred HHCHH--HCCCHHHHH--------HHHHHHCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHC---CC-----CEEEEEEC T ss_conf 63544--438999999--------99987367633357789969998999889999998525---88-----76999977 Q ss_pred CHHHHHHHHHHHHH Q ss_conf 97899999864111 Q gi|254780410|r 119 SERLTLIQKKQLAS 132 (362) Q Consensus 119 s~~l~~~Q~~~l~~ 132 (362) .+.+.+.-++.+.. T Consensus 91 D~~~~~~L~~~~~~ 104 (353) T 1i4w_A 91 RSSLYKFLNAKFEG 104 (353) T ss_dssp CHHHHHHHHHHTTT T ss_pred CHHHHHHHHHHHCC T ss_conf 78899999987145 No 14 >1qyr_A KSGA, high level kasugamycin resistance protein, S-; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 Probab=96.74 E-value=0.0027 Score=41.12 Aligned_cols=84 Identities=15% Similarity=0.143 Sum_probs=52.1 Q ss_pred HHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHCCCCHHCCC-- Q ss_conf 999999999838887621410078646898887999974185643012102363697899999864111023101104-- Q gi|254780410|r 64 AIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASYGDKINWYT-- 141 (362) Q Consensus 64 a~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~~~~v~w~~-- 141 (362) ...+++. .+....-.|+|+|||.|.|..-+++. ..+++.||+-+.|.+..++++... .++.++. T Consensus 10 ~~~iv~~---~~~~~~d~vlEIGpG~G~LT~~Ll~~----------~~~v~avE~D~~l~~~L~~~~~~~-~~~~ii~~D 75 (252) T 1qyr_A 10 IDSIVSA---INPQKGQAMVEIGPGLAALTEPVGER----------LDQLTVIELDRDLAARLQTHPFLG-PKLTIYQQD 75 (252) T ss_dssp HHHHHHH---HCCCTTCCEEEECCTTTTTHHHHHTT----------CSCEEEECCCHHHHHHHHTCTTTG-GGEEEECSC T ss_pred HHHHHHH---CCCCCCCEEEEECCCCCHHHHHHHHC----------CCCEEEEEECCHHHHHHHHHHHCC-CCEEEEECH T ss_conf 9999984---48999796999899872999999816----------897699996212889999876317-762565011 Q ss_pred ----CHHHC---CCCCEEEEEECCCCCCCEEE Q ss_conf ----34444---56956999812288752358 Q gi|254780410|r 142 ----SLADV---PLGFTFLVANEFFDSLPIKQ 166 (362) Q Consensus 142 ----~l~~~---~~~~~iiiaNE~lDAlPv~~ 166 (362) ++++. ...+..++|| ||.+. T Consensus 76 ~l~~~~~~~~~~~~~~~~vvgN-----LPY~I 102 (252) T 1qyr_A 76 AMTFNFGELAEKMGQPLRVFGN-----LPYNI 102 (252) T ss_dssp GGGCCHHHHHHHHTSCEEEEEE-----CCTTT T ss_pred HHHHCHHHHHCCCCCCEEEEEC-----CHHHH T ss_conf 4552321221036897599946-----62889 No 15 >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative, SAM-dependent methyltransferase; HET: SAI; 1.94A {Leishmania major strain friedlin} SCOP: c.66.1.42 Probab=96.72 E-value=0.013 Score=36.55 Aligned_cols=156 Identities=11% Similarity=0.028 Sum_probs=80.1 Q ss_pred HHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHCCCCHHCC-CCHHHC Q ss_conf 9999983888762141007864689888799997418564301210236369789999986411102310110-434444 Q gi|254780410|r 68 ICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASYGDKINWY-TSLADV 146 (362) Q Consensus 68 ~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~~~~v~w~-~~l~~~ 146 (362) ..++..+.....-.++|+|+|.|.++..++... ..++..||+|+.+.+.-++++.... .+.++ .++.+ T Consensus 83 ~~fl~~~~~~~~~~vLDiGcG~G~~t~~ll~~~---------~~~V~~vD~s~~~l~~a~~~~~~~~-~~~~~~~d~~~- 151 (254) T 1xtp_A 83 RNFIASLPGHGTSRALDCGAGIGRITKNLLTKL---------YATTDLLEPVKHMLEEAKRELAGMP-VGKFILASMET- 151 (254) T ss_dssp HHHHHTSTTCCCSEEEEETCTTTHHHHHTHHHH---------CSEEEEEESCHHHHHHHHHHTTTSS-EEEEEESCGGG- T ss_pred HHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHC---------CCEEEEEECCHHHHHHHHHCCCCCC-EEEEEECCHHH- T ss_conf 999985733589738996678859999999863---------9858999198899999864015774-27999778756- Q ss_pred CCCCEEEEEECCCCCCCEEEEEEECCCCEEEEEEEEECCCEEECCCCCCCCCCCCCCCCCCCCCEECC-C-HHHHHHHHH Q ss_conf 56956999812288752358999156646899899607953522576434322346331656841127-9-347899999 Q gi|254780410|r 147 PLGFTFLVANEFFDSLPIKQFVMTEHGIRERMIDIDQHDSLVFNIGDHEIKSNFLTCSDYFLGAIFEN-S-PCRDREMQS 224 (362) Q Consensus 147 ~~~~~iiiaNE~lDAlPv~~~~~~~~~w~E~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~E~-~-~~~~~~~~~ 224 (362) +|. .++.+- ..-. ...+++ . +....+++. T Consensus 152 ---------------~~~------------------~~~~fD-----------~I~~-----~~~l~hl~d~~~~~~l~~ 182 (254) T 1xtp_A 152 ---------------ATL------------------PPNTYD-----------LIVI-----QWTAIYLTDADFVKFFKH 182 (254) T ss_dssp ---------------CCC------------------CSSCEE-----------EEEE-----ESCGGGSCHHHHHHHHHH T ss_pred ---------------CCC------------------CCCCCC-----------EEEE-----EEEHHCCCHHHHHHHHHH T ss_conf ---------------888------------------777634-----------6764-----211004761457899999 Q ss_pred HHHHHHHCCEEEEEECCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEECCEEHHHH Q ss_conf 99976205705999624336858888077640576767000100034531268899999999689836332338999 Q gi|254780410|r 225 ISDRLACDGGTAIVIDYGYLQSRVGDTLQAVKGHTYVSPLVNPGQADLSSHVDFQRLSSIAILYKLYINGLTTQGKF 301 (362) Q Consensus 225 i~~~l~~~~G~~L~iDYGy~~~r~~gTLr~y~~H~~~dpl~~pG~~DITahVnFs~L~~~a~~~g~~~~g~~sQ~~F 301 (362) +.+.|+. +|.+++-|+...... .. . | ..|-+..-.-..+.+.++++|++++.-..|..| T Consensus 183 ~~~~Lkp-gG~ivi~e~~~~~~~---~~---~-----d------~~~~s~~rs~~~~~~l~~~aGf~vi~~~~q~~f 241 (254) T 1xtp_A 183 CQQALTP-NGYIFFKENCSTGDR---FL---V-----D------KEDSSLTRSDIHYKRLFNESGVRVVKEAFQEEW 241 (254) T ss_dssp HHHHEEE-EEEEEEEEEBC--CC---EE---E-----E------TTTTEEEBCHHHHHHHHHHHTCCEEEEEECTTC T ss_pred HHHHCCC-CCEEEEEECCCCCCC---CE---E-----C------CCCCCEECCHHHHHHHHHHCCCEEEEEEEECCC T ss_conf 9998189-968999964777876---31---1-----1------567743489999999999879989999973699 No 16 >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Probab=96.70 E-value=0.021 Score=35.04 Aligned_cols=174 Identities=15% Similarity=0.125 Sum_probs=86.9 Q ss_pred HHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHCCCCHH Q ss_conf 99999999999999838887621410078646898887999974185643012102363697899999864111023101 Q gi|254780410|r 59 FGEMLAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASYGDKIN 138 (362) Q Consensus 59 Fg~~ia~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~~~~v~ 138 (362) +.+...+.+..+.+.++.++.-.|+|+|.|.|.++..+++. ...+++-++.|+......+++...... T Consensus 42 ~~~a~~~~~~~l~~~~~l~~g~~VLDiGcG~G~~~~~~~~~---------~~~~v~gvD~s~~~~~~~~~~~~~~~~--- 109 (273) T 3bus_A 42 VDDATDRLTDEMIALLDVRSGDRVLDVGCGIGKPAVRLATA---------RDVRVTGISISRPQVNQANARATAAGL--- 109 (273) T ss_dssp HHHHHHHHHHHHHHHSCCCTTCEEEEESCTTSHHHHHHHHH---------SCCEEEEEESCHHHHHHHHHHHHHTTC--- T ss_pred HHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHH---------CCCEEEEEECCHHHHHHHHHHHHHHCC--- T ss_conf 99999999999998669899798999789799889999984---------598899997848889999999987177--- Q ss_pred CCCCHHHCCCCCEEEEEECCCCCCCEEEEEEECCCCEEEEEEEEECCCEEECCCCCCCCCCCCCCCCCCCCCEECCCHHH Q ss_conf 10434444569569998122887523589991566468998996079535225764343223463316568411279347 Q gi|254780410|r 139 WYTSLADVPLGFTFLVANEFFDSLPIKQFVMTEHGIRERMIDIDQHDSLVFNIGDHEIKSNFLTCSDYFLGAIFENSPCR 218 (362) Q Consensus 139 w~~~l~~~~~~~~iiiaNE~lDAlPv~~~~~~~~~w~E~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~E~~~~~ 218 (362) .....++.+ =...+|+. .+=+-..+.. ..++.-+.. T Consensus 110 --------~~~~~~~~~--d~~~l~~~------~~~fD~v~~~----------------------------~~l~h~~d~ 145 (273) T 3bus_A 110 --------ANRVTFSYA--DAMDLPFE------DASFDAVWAL----------------------------ESLHHMPDR 145 (273) T ss_dssp --------TTTEEEEEC--CTTSCCSC------TTCEEEEEEE----------------------------SCTTTSSCH T ss_pred --------CCEEECCCC--CCCCCCCC------CCCCCEEEEC----------------------------CCEEECCCH T ss_conf --------732100134--43468877------7762489864----------------------------626506649 Q ss_pred HHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEECCEE Q ss_conf 8999999997620570599962433685888807764057676700010003453126889999999968983633233 Q gi|254780410|r 219 DREMQSISDRLACDGGTAIVIDYGYLQSRVGDTLQAVKGHTYVSPLVNPGQADLSSHVDFQRLSSIAILYKLYINGLTT 297 (362) Q Consensus 219 ~~~~~~i~~~l~~~~G~~L~iDYGy~~~r~~gTLr~y~~H~~~dpl~~pG~~DITahVnFs~L~~~a~~~g~~~~g~~s 297 (362) ...++++.+.|+. +|.+++.|+-..... .+..+ ...+.+..++. +......+.+.+..+++|++++...+ T Consensus 146 ~~~l~~~~r~Lkp-gG~l~i~~~~~~~~~-~~~~~-----~~~~~~~~~~~--~~~~~~~~~~~~~l~~~Gf~~~~~~~ 215 (273) T 3bus_A 146 GRALREMARVLRP-GGTVAIADFVLLAPV-EGAKK-----EAVDAFRAGGG--VLSLGGIDEYESDVRQAELVVTSTVD 215 (273) T ss_dssp HHHHHHHHTTEEE-EEEEEEEEEEESSCC-CHHHH-----HHHHHHHHHHT--CCCCCCHHHHHHHHHHTTCEEEEEEE T ss_pred HHHHHHHHHHCCC-CCEEEEEEEECCCCC-CHHHH-----HHHHHHCCCCC--CCCCCCHHHHHHHHHHCCCEEEEEEE T ss_conf 9999999986599-968999999625886-43557-----65555124765--43568889999999967968999998 No 17 >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, antibiotic resistance, methyltransferase; 1.44A {Aquifex aeolicus VF5} PDB: 3ftc_A 3fte_A 3ftf_A* Probab=96.66 E-value=0.0052 Score=39.17 Aligned_cols=67 Identities=16% Similarity=0.289 Sum_probs=43.2 Q ss_pred CCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECC Q ss_conf 98888888864576711799999999999999983888762141007864689888799997418564301210236369 Q gi|254780410|r 40 CNPFGAVGDFVTAPEISQIFGEMLAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETS 119 (362) Q Consensus 40 ~~~~G~~GDF~Tsp~is~~Fg~~ia~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s 119 (362) +..+|. .|.+.+.+-. .+++ ..+..+.=.|+|+|||.|.|...+++. ..-.++.+|+- T Consensus 6 kk~lGQ--nFL~d~~~~~--------~iv~---~~~~~~~d~VlEIGpG~G~LT~~Ll~~---------~~~~v~aiE~D 63 (249) T 3ftd_A 6 KKSFGQ--HLLVSEGVLK--------KIAE---ELNIEEGNTVVEVGGGTGNLTKVLLQH---------PLKKLYVIELD 63 (249) T ss_dssp --CCCS--SCEECHHHHH--------HHHH---HTTCCTTCEEEEEESCHHHHHHHHTTS---------CCSEEEEECCC T ss_pred CCCCCC--CCCCCHHHHH--------HHHH---HCCCCCCCEEEEECCCCCHHHHHHHHH---------CCCEEEEEEEC T ss_conf 777884--5018989999--------9999---548999894999699876989999970---------45707899986 Q ss_pred HHHHHHHHH Q ss_conf 789999986 Q gi|254780410|r 120 ERLTLIQKK 128 (362) Q Consensus 120 ~~l~~~Q~~ 128 (362) +.+...-++ T Consensus 64 ~~l~~~l~~ 72 (249) T 3ftd_A 64 REMVENLKS 72 (249) T ss_dssp HHHHHHHTT T ss_pred CCCHHHHHH T ss_conf 620013222 No 18 >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.30A {Bacillus cereus atcc 14579} PDB: 2gh1_A Probab=96.63 E-value=0.0031 Score=40.71 Aligned_cols=81 Identities=12% Similarity=0.219 Sum_probs=50.9 Q ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHCCCCHHCC-CCHHHCC--CCCEE Q ss_conf 88762141007864689888799997418564301210236369789999986411102310110-4344445--69569 Q gi|254780410|r 76 FPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASYGDKINWY-TSLADVP--LGFTF 152 (362) Q Consensus 76 ~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~~~~v~w~-~~l~~~~--~~~~i 152 (362) .+.+..|+|+|.|+|.++..+.+. .| ...+++-|+.|+.+.+.-+++.+..+.++.++ .+..+++ ....+ T Consensus 20 ~~~~~~ILDiGcG~G~~~~~la~~----~~---~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~ 92 (284) T 3gu3_A 20 ITKPVHIVDYGCGYGYLGLVLMPL----LP---EGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELNDKYDI 92 (284) T ss_dssp CCSCCEEEEETCTTTHHHHHHTTT----SC---TTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCSSCEEE T ss_pred CCCCCEEEEECCCCCHHHHHHHHH----CC---CCCEEEEECCCHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCEEE T ss_conf 699897999548798999999985----77---99889998498999999998666414200120011124798997579 Q ss_pred EEEECCCCCCC Q ss_conf 99812288752 Q gi|254780410|r 153 LVANEFFDSLP 163 (362) Q Consensus 153 iiaNE~lDAlP 163 (362) |+++.++-.+| T Consensus 93 V~~~~~l~h~~ 103 (284) T 3gu3_A 93 AICHAFLLHMT 103 (284) T ss_dssp EEEESCGGGCS T ss_pred EEEHHHHHCCC T ss_conf 98864765678 No 19 >2f8l_A Hypothetical protein LMO1582; 16411011, structural genomics, PSI, protein structure initiative, joint center for structural genomics; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 Probab=96.59 E-value=0.012 Score=36.67 Aligned_cols=104 Identities=12% Similarity=0.052 Sum_probs=61.6 Q ss_pred CCCCCEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHH Q ss_conf 88888645767117999999999999999838887621410078646898887999974185643012102363697899 Q gi|254780410|r 44 GAVGDFVTAPEISQIFGEMLAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLT 123 (362) Q Consensus 44 G~~GDF~Tsp~is~~Fg~~ia~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~ 123 (362) +..|.|+|-..+..+-..++.. + ........|++.++|+|.|+..+++.+.... ....+++-+|+++.+. T Consensus 103 ~~~g~~~TP~~i~~~m~~l~~~----~---~~~~~~~~vlDp~cGsG~~l~~~~~~l~~~~---~~~~~~~g~di~~~~~ 172 (344) T 2f8l_A 103 IQVNHQMTPDSIGFIVAYLLEK----V---IQKKKNVSILDPACGTANLLTTVINQLELKG---DVDVHASGVDVDDLLI 172 (344) T ss_dssp CCGGGCCCCHHHHHHHHHHHHH----H---HTTCSEEEEEETTCTTSHHHHHHHHHHHTTS---SCEEEEEEEESCHHHH T ss_pred CCCCEECCCHHHHHHHHHHHHH----H---HCCCCCCEEEECCCCCCHHHHHHHHHHHHCC---CCCEEEEEEECCHHHH T ss_conf 6488137848999999999999----8---3789998899548996689999999987536---7761899998999999 Q ss_pred HHHHHHHHHCCCCHHCC--CCHHHCC-CCCEEEEEEC Q ss_conf 99986411102310110--4344445-6956999812 Q gi|254780410|r 124 LIQKKQLASYGDKINWY--TSLADVP-LGFTFLVANE 157 (362) Q Consensus 124 ~~Q~~~l~~~~~~v~w~--~~l~~~~-~~~~iiiaNE 157 (362) +.-+.++.-+..+..++ +.+...+ ....+|++|= T Consensus 173 ~~a~~n~~~~~~~~~~~~~d~~~~~~~~~fD~iv~NP 209 (344) T 2f8l_A 173 SLALVGADLQRQKMTLLHQDGLANLLVDPVDVVISDL 209 (344) T ss_dssp HHHHHHHHHHTCCCEEEESCTTSCCCCCCEEEEEEEC T ss_pred HHHHHCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCC T ss_conf 9999640002221233100110013467767211579 No 20 >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Probab=96.59 E-value=0.0071 Score=38.25 Aligned_cols=150 Identities=9% Similarity=0.147 Sum_probs=78.9 Q ss_pred HHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHCC-CCHHCCCCHHHCCCC Q ss_conf 9983888762141007864689888799997418564301210236369789999986411102-310110434444569 Q gi|254780410|r 71 WEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASYG-DKINWYTSLADVPLG 149 (362) Q Consensus 71 ~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~~-~~v~w~~~l~~~~~~ 149 (362) +..++....-.|+|+|+|+|.++..+.+.+. | ..+++-+|.|+.+.+.-++++.... .++.++ T Consensus 30 l~~~~l~~g~~VLDiGcG~G~~~~~la~~~~---~----~~~v~giD~s~~~i~~a~~~~~~~~~~~v~~~--------- 93 (219) T 3dh0_A 30 LKEFGLKEGMTVLDVGTGAGFYLPYLSKMVG---E----KGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVL--------- 93 (219) T ss_dssp HHHHTCCTTCEEEESSCTTCTTHHHHHHHHT---T----TCEEEEEESCHHHHHHHHHHHHHHTCTTEEEE--------- T ss_pred HHHCCCCCCCEEEEECCCCCHHHHHHHHHCC---C----CEEEEEEEEHHHHHHHHHHHHHHHHCCEEHHH--------- T ss_conf 9865989939999987888877999997508---9----83999985003778899997676402210010--------- Q ss_pred CEEEEEECCCCCCCEEEEEEECCCCEEEEEEEEECCCEEECCCCCCCCCCCCCCCCCCCCCEECCCHHHHHHHHHHHHHH Q ss_conf 56999812288752358999156646899899607953522576434322346331656841127934789999999976 Q gi|254780410|r 150 FTFLVANEFFDSLPIKQFVMTEHGIRERMIDIDQHDSLVFNIGDHEIKSNFLTCSDYFLGAIFENSPCRDREMQSISDRL 229 (362) Q Consensus 150 ~~iiiaNE~lDAlPv~~~~~~~~~w~E~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~E~~~~~~~~~~~i~~~l 229 (362) .++ .+.+|+. ++.+-..+.. . .++.-+.....++.+.+.| T Consensus 94 ----~~d--~~~lp~~------~~sfD~V~~~---~-------------------------~l~~~~d~~~~l~ei~rvL 133 (219) T 3dh0_A 94 ----KSE--ENKIPLP------DNTVDFIFMA---F-------------------------TFHELSEPLKFLEELKRVA 133 (219) T ss_dssp ----ECB--TTBCSSC------SSCEEEEEEE---S-------------------------CGGGCSSHHHHHHHHHHHE T ss_pred ----HHH--HHCCCCC------CCCEEEHHHC---C-------------------------HHHHCCCHHHHHHHHHHHC T ss_conf ----003--3327755------5542135731---4-------------------------0420779999999999986 Q ss_pred HHCCEEEEEECCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEECCEE Q ss_conf 20570599962433685888807764057676700010003453126889999999968983633233 Q gi|254780410|r 230 ACDGGTAIVIDYGYLQSRVGDTLQAVKGHTYVSPLVNPGQADLSSHVDFQRLSSIAILYKLYINGLTT 297 (362) Q Consensus 230 ~~~~G~~L~iDYGy~~~r~~gTLr~y~~H~~~dpl~~pG~~DITahVnFs~L~~~a~~~g~~~~g~~s 297 (362) + .+|.++++||...... .+ .+. ....+-..+....+++|++...... T Consensus 134 k-pgG~l~i~d~~~~~~~-~~-----------~~~--------~~~~~~~~~~~~l~~aGf~~~~~~~ 180 (219) T 3dh0_A 134 K-PFAYLAIIDWKKEERD-KG-----------PPP--------EEVYSEWEVGLILEDAGIRVGRVVE 180 (219) T ss_dssp E-EEEEEEEEEECSSCCS-SS-----------CCG--------GGSCCHHHHHHHHHHTTCEEEEEEE T ss_pred C-CCEEEEEEECCCCCCC-CC-----------CCH--------HHCCCHHHHHHHHHHCCCEEEEEEE T ss_conf 8-3818999988865466-69-----------875--------7658999999999986996988888 No 21 >1im8_A YECO; methyltransferase, adenosylhomocysteine, structural genomics, hypothetical protein, structure 2 function project, S2F; HET: SAI; 2.20A {Haemophilus influenzae rd KW20} SCOP: c.66.1.14 Probab=96.55 E-value=0.01 Score=37.16 Aligned_cols=83 Identities=20% Similarity=0.330 Sum_probs=54.3 Q ss_pred CCCCEEECCCCCHHHHHHHHHH----------HHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEE Q ss_conf 8888645767117999999999----------999999838887621410078646898887999974185643012102 Q gi|254780410|r 45 AVGDFVTAPEISQIFGEMLAIF----------LICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIY 114 (362) Q Consensus 45 ~~GDF~Tsp~is~~Fg~~ia~~----------~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ 114 (362) +-+||.=--.+..+|-..+.+. +..+.+... +..-+|+|+|.|+|.++.-+++.+. . ...+++ T Consensus 16 ~~~~f~F~~~va~~fd~~i~r~iP~Y~~~~~~i~~~~~~~~-~~~~~vLDlGcGtG~~~~~l~~~~~--~----~~~~v~ 88 (244) T 1im8_A 16 KLGDFIFDENVAEVFPDMIQRSVPGYSNIITAIGMLAERFV-TADSNVYDLGCSRGAATLSARRNIN--Q----PNVKII 88 (244) T ss_dssp ----CCCCHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHC-CTTCEEEEESCTTCHHHHHHHHTCC--C----SSCEEE T ss_pred HCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHC-CCCCEEEEEEECCCHHHHHHHHHCC--C----CCCEEE T ss_conf 14897328527776066887059988999999999999867-9979899920022288999886336--9----980899 Q ss_pred EEECCHHHHHHHHHHHHHCC Q ss_conf 36369789999986411102 Q gi|254780410|r 115 MVETSERLTLIQKKQLASYG 134 (362) Q Consensus 115 ivE~s~~l~~~Q~~~l~~~~ 134 (362) -|++|+.+.+.-++++...+ T Consensus 89 giD~S~~ml~~A~~k~~~~~ 108 (244) T 1im8_A 89 GIDNSQPMVERCRQHIAAYH 108 (244) T ss_dssp EECSCHHHHHHHHHHHHTSC T ss_pred EECCCHHHHHHHHHHHHHCC T ss_conf 97697899999986443106 No 22 >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, protein structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides 2} Probab=96.55 E-value=0.0081 Score=37.86 Aligned_cols=79 Identities=13% Similarity=0.178 Sum_probs=49.4 Q ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHCCCCHHCCC----CHHHCCCCC Q ss_conf 8887621410078646898887999974185643012102363697899999864111023101104----344445695 Q gi|254780410|r 75 GFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASYGDKINWYT----SLADVPLGF 150 (362) Q Consensus 75 ~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~~~~v~w~~----~l~~~~~~~ 150 (362) +.+..-.|+|+|+|+|.++.-+++. ..+++-++.|+.+.+.-++++...+..+.+.. +++...... T Consensus 42 ~~~pg~~vLdvGcG~G~~~~~l~~~----------g~~v~g~D~S~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~f 111 (261) T 3iv6_A 42 NIVPGSTVAVIGASTRFLIEKALER----------GASVTVFDFSQRMCDDLAEALADRCVTIDLLDITAEIPKELAGHF 111 (261) T ss_dssp TCCTTCEEEEECTTCHHHHHHHHHT----------TCEEEEEESCHHHHHHHHHHTSSSCCEEEECCTTSCCCGGGTTCC T ss_pred CCCCCCEEEEECCCCCHHHHHHHHC----------CCEEEEECCCHHHHHHHHHHHHHCCCCCCEEECCHHHCCCCCCCC T ss_conf 7999997999889788899999967----------998999777899999999974640565330212253233457884 Q ss_pred EEEEEECCCCCCC Q ss_conf 6999812288752 Q gi|254780410|r 151 TFLVANEFFDSLP 163 (362) Q Consensus 151 ~iiiaNE~lDAlP 163 (362) ..|+|+..|..+| T Consensus 112 D~Vv~~~~~~~~~ 124 (261) T 3iv6_A 112 DFVLNDRLINRFT 124 (261) T ss_dssp SEEEEESCGGGSC T ss_pred CEEEECCHHHHCC T ss_conf 6899813787469 No 23 >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Probab=96.53 E-value=0.016 Score=35.90 Aligned_cols=61 Identities=13% Similarity=0.073 Sum_probs=41.3 Q ss_pred HHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHCCCCHH Q ss_conf 999999838887621410078646898887999974185643012102363697899999864111023101 Q gi|254780410|r 67 LICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASYGDKIN 138 (362) Q Consensus 67 ~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~~~~v~ 138 (362) +.++..+ ..|+.-.|+|+|+|.|.++..+.+. ..+++.++.|+.+.+.-+++......++. T Consensus 28 l~~~~~~-~~~~~~rVLDiGCG~G~~~~~la~~----------~~~v~g~D~s~~~l~~ak~~~~~~~~~~~ 88 (227) T 1ve3_A 28 LEPLLMK-YMKKRGKVLDLACGVGGFSFLLEDY----------GFEVVGVDISEDMIRKAREYAKSRESNVE 88 (227) T ss_dssp HHHHHHH-SCCSCCEEEEETCTTSHHHHHHHHT----------TCEEEEEESCHHHHHHHHHHHHHTTCCCE T ss_pred HHHHHHH-HCCCCCEEEEECCCCCHHHHHHHHC----------CCEEEEEECCCHHHHHHHHHHHHCCCCCC T ss_conf 9999998-4799897999868888999999965----------99899996750468999998875276533 No 24 >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; NP_988299.1, structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Probab=96.49 E-value=0.0091 Score=37.48 Aligned_cols=65 Identities=23% Similarity=0.391 Sum_probs=42.7 Q ss_pred HHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHC--CCCHHCC Q ss_conf 99999999998388876214100786468988879999741856430121023636978999998641110--2310110 Q gi|254780410|r 63 LAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASY--GDKINWY 140 (362) Q Consensus 63 ia~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~--~~~v~w~ 140 (362) ++.+++ +..+.. +-+|+|+|+|+|.++..+++. ...+++-++.|+.+.+.-+++++.. ..++.|+ T Consensus 32 ~~~~i~---~~~~~~-~~~VLDiGcG~G~~~~~la~~---------~~~~v~giD~s~~~l~~a~~~~~~~~~~~~i~~~ 98 (219) T 3dlc_A 32 IAENII---NRFGIT-AGTCIDIGSGPGALSIALAKQ---------SDFSIRALDFSKHMNEIALKNIADANLNDRIQIV 98 (219) T ss_dssp HHHHHH---HHHCCC-EEEEEEETCTTSHHHHHHHHH---------SEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEE T ss_pred HHHHHH---HHCCCC-CCEEEEECCCCCHHHHHHHHH---------CCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEC T ss_conf 999999---972999-993999627585999999953---------6998999979789999998744421666640001 No 25 >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Probab=96.46 E-value=0.0064 Score=38.55 Aligned_cols=44 Identities=27% Similarity=0.452 Sum_probs=33.5 Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHH Q ss_conf 762141007864689888799997418564301210236369789999986411 Q gi|254780410|r 78 SCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLA 131 (362) Q Consensus 78 ~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~ 131 (362) +.-.|+|+|+|+|.++.-+.+. ..+++-+|.|+.+.+.-+++++ T Consensus 45 ~~~~vLDiGcG~G~~~~~l~~~----------~~~v~gvD~S~~mi~~a~~k~~ 88 (220) T 3hnr_A 45 SFGNVLEFGVGTGNLTNKLLLA----------GRTVYGIEPSREMRMIAKEKLP 88 (220) T ss_dssp CCSEEEEECCTTSHHHHHHHHT----------TCEEEEECSCHHHHHHHHHHSC T ss_pred CCCEEEEECCCCCHHHHHHHHC----------CCEEEEEECCHHHHHHHHHCCC T ss_conf 9793999728785999999977----------9989999583577899874256 No 26 >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 Probab=96.37 E-value=0.023 Score=34.72 Aligned_cols=89 Identities=20% Similarity=0.260 Sum_probs=55.0 Q ss_pred HHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHCC-CCHHCC-CCHHHC Q ss_conf 999983888762141007864689888799997418564301210236369789999986411102-310110-434444 Q gi|254780410|r 69 CAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASYG-DKINWY-TSLADV 146 (362) Q Consensus 69 ~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~~-~~v~w~-~~l~~~ 146 (362) .+.+.++....-.|+|+|.|+|.++.-+.+.+. ...+++.||.++.+.+.-++++...+ .+|.++ .+..+. T Consensus 66 ~ml~~L~l~~g~~VLeIGtGtGy~aa~la~~~~-------~~~~V~~iE~~~~l~~~A~~~l~~~g~~nv~~~~gD~~~g 138 (317) T 1dl5_A 66 LFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVG-------EKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYG 138 (317) T ss_dssp HHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHC-------TTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGC T ss_pred HHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHC-------CCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCHHHC T ss_conf 999971899999899917976476899988618-------8867999957817899999989973578739998955758 Q ss_pred -CC-C-CEEEEEECCCCCCCE Q ss_conf -56-9-569998122887523 Q gi|254780410|r 147 -PL-G-FTFLVANEFFDSLPI 164 (362) Q Consensus 147 -~~-~-~~iiiaNE~lDAlPv 164 (362) +. . ...|+++--+..+|- T Consensus 139 ~~~~~~fD~Iiv~~~~~~ip~ 159 (317) T 1dl5_A 139 VPEFSPYDVIFVTVGVDEVPE 159 (317) T ss_dssp CGGGCCEEEEEECSBBSCCCH T ss_pred CCCCCCCCEEEECCCHHHHHH T ss_conf 877899419999687688589 No 27 >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Probab=96.37 E-value=0.02 Score=35.11 Aligned_cols=61 Identities=13% Similarity=0.070 Sum_probs=38.7 Q ss_pred HHHHHHHHHHHHHHHHCC-CCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHH Q ss_conf 999999999999999838-88762141007864689888799997418564301210236369789999986 Q gi|254780410|r 58 IFGEMLAIFLICAWEQHG-FPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKK 128 (362) Q Consensus 58 ~Fg~~ia~~~~~~~~~~~-~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~ 128 (362) .|...........+..+. .+..-.|+|+|+|+|.++..+.+. ..+++.+|.|+.+.+.-++ T Consensus 25 ~~~~~~~~~~~~~~~~l~~~~~~~~vLDvGcG~G~~~~~la~~----------g~~v~gvD~S~~~l~~a~~ 86 (218) T 3ou2_A 25 TFVPYMDSAAPAALERLRAGNIRGDVLELASGTGYWTRHLSGL----------ADRVTALDGSAEMIAEAGR 86 (218) T ss_dssp HHHHHHTTTHHHHHHHHTTTTSCSEEEEESCTTSHHHHHHHHH----------SSEEEEEESCHHHHHHHGG T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHC----------CCEEEEEECCCHHHHHHHH T ss_conf 8523225789999999736688997999889887899999961----------9989999783178999997 No 28 >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus HB8} PDB: 2yr0_A Probab=96.36 E-value=0.0079 Score=37.93 Aligned_cols=53 Identities=15% Similarity=0.254 Sum_probs=39.8 Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHCCCCHHCC Q ss_conf 762141007864689888799997418564301210236369789999986411102310110 Q gi|254780410|r 78 SCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASYGDKINWY 140 (362) Q Consensus 78 ~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~~~~v~w~ 140 (362) +.-.|+|+|+|.|.++..+.+. ..+++-+|+|+.+.+.-+++++..+.+|.+. T Consensus 39 ~~~~vLDiGcG~G~~t~~la~~----------~~~V~gvD~S~~~l~~a~~r~~~~~~~v~~~ 91 (263) T 2yqz_A 39 EEPVFLELGVGTGRIALPLIAR----------GYRYIALDADAAMLEVFRQKIAGVDRKVQVV 91 (263) T ss_dssp SCCEEEEETCTTSTTHHHHHTT----------TCEEEEEESCHHHHHHHHHHTTTSCTTEEEE T ss_pred CCCEEEEECCCCCHHHHHHHHC----------CCEEEEEECCHHHHHHHHHHCCCCCCCCHHH T ss_conf 9998999517886999999966----------9989999898999999874021011441022 No 29 >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Probab=96.36 E-value=0.013 Score=36.44 Aligned_cols=56 Identities=11% Similarity=0.095 Sum_probs=38.9 Q ss_pred HHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHC Q ss_conf 999998388876214100786468988879999741856430121023636978999998641110 Q gi|254780410|r 68 ICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASY 133 (362) Q Consensus 68 ~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~ 133 (362) .-+.+.++..+.-.|+|+|.|+|.++..+.+ .. .+++-||.|+.+.+.-+++.... T Consensus 11 ~~l~~~~~~~pg~rVLDiGCGtG~~~~~la~----~~------~~v~gvD~S~~ml~~A~~~~~~~ 66 (239) T 1xxl_A 11 GLMIKTAECRAEHRVLDIGAGAGHTALAFSP----YV------QECIGVDATKEMVEVASSFAQEK 66 (239) T ss_dssp HHHHHHHTCCTTCEEEEESCTTSHHHHHHGG----GS------SEEEEEESCHHHHHHHHHHHHHH T ss_pred HHHHHHHCCCCCCEEEEECCCCCHHHHHHHH----CC------CEEEEEECCHHHHHHHHHHHHHC T ss_conf 9999985899989899958868599999997----09------97999979999999999865430 No 30 >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Probab=96.35 E-value=0.028 Score=34.13 Aligned_cols=160 Identities=16% Similarity=0.087 Sum_probs=84.7 Q ss_pred HCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHCC--CCHHCCCCHHHCCCCC Q ss_conf 83888762141007864689888799997418564301210236369789999986411102--3101104344445695 Q gi|254780410|r 73 QHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASYG--DKINWYTSLADVPLGF 150 (362) Q Consensus 73 ~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~~--~~v~w~~~l~~~~~~~ 150 (362) ..+.+..-.|+|+|.|.|.++.-+.+.. ..+++-|++|+.+.+.-+++....+ ++|. T Consensus 77 ~~~l~~~~~VLDiGCG~G~~~~~la~~~---------g~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~------------ 135 (297) T 2o57_A 77 TGVLQRQAKGLDLGAGYGGAARFLVRKF---------GVSIDCLNIAPVQNKRNEEYNNQAGLADNIT------------ 135 (297) T ss_dssp TTCCCTTCEEEEETCTTSHHHHHHHHHH---------CCEEEEEESCHHHHHHHHHHHHHHTCTTTEE------------ T ss_pred HCCCCCCCEEEEECCCCCHHHHHHHHHC---------CCEEEEEECCHHHHHHHHHHHHHCCCCCCCE------------ T ss_conf 4698999989998899998999999963---------9859999674277888876443205676622------------ Q ss_pred EEEEEECCCCCCCEEEEEEECCCCEEEEEEEEECCCEEECCCCCCCCCCCCCCCCCCCCCEECCCHHHHHHHHHHHHHHH Q ss_conf 69998122887523589991566468998996079535225764343223463316568411279347899999999762 Q gi|254780410|r 151 TFLVANEFFDSLPIKQFVMTEHGIRERMIDIDQHDSLVFNIGDHEIKSNFLTCSDYFLGAIFENSPCRDREMQSISDRLA 230 (362) Q Consensus 151 ~iiiaNE~lDAlPv~~~~~~~~~w~E~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~E~~~~~~~~~~~i~~~l~ 230 (362) ++.++ +..+|+. ++-+-..+.. ..++.-+....++..+.+.|+ T Consensus 136 -~~~~d--~~~l~~~------~~~fD~V~~~----------------------------~~l~h~~d~~~~l~~~~r~Lk 178 (297) T 2o57_A 136 -VKYGS--FLEIPCE------DNSYDFIWSQ----------------------------DAFLHSPDKLKVFQECARVLK 178 (297) T ss_dssp -EEECC--TTSCSSC------TTCEEEEEEE----------------------------SCGGGCSCHHHHHHHHHHHEE T ss_pred -EEECC--CCCCCCC------CCCEEEEEEC----------------------------CCHHHCCCHHHHHHHHHHHCC T ss_conf -78612--2256766------6511099985----------------------------724423799999999999719 Q ss_pred HCCEEEEEECCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEECCEEHHHHH Q ss_conf 057059996243368588880776405767670001000345312688999999996898363323389999 Q gi|254780410|r 231 CDGGTAIVIDYGYLQSRVGDTLQAVKGHTYVSPLVNPGQADLSSHVDFQRLSSIAILYKLYINGLTTQGKFL 302 (362) Q Consensus 231 ~~~G~~L~iDYGy~~~r~~gTLr~y~~H~~~dpl~~pG~~DITahVnFs~L~~~a~~~g~~~~g~~sQ~~FL 302 (362) . +|.+++.|+..........+.. .+.... +...-..+.+.+.++++|++.+......+.+ T Consensus 179 p-GG~l~~~~~~~~~~~~~~~~~~--------~~~~~~---~~~~~s~~~~~~~l~~~Gf~~i~~~d~~~~~ 238 (297) T 2o57_A 179 P-RGVMAITDPMKEDGIDKSSIQP--------ILDRIK---LHDMGSLGLYRSLAKECGLVTLRTFSRPDSL 238 (297) T ss_dssp E-EEEEEEEEEEECTTCCGGGGHH--------HHHHHT---CSSCCCHHHHHHHHHHTTEEEEEEEECHHHH T ss_pred C-CCEEEEEECCCCCCCCHHHHHH--------HHHHHC---CCCCCCHHHHHHHHHHCCCEEEEEEECCHHH T ss_conf 8-8189999844778987667899--------998741---5899999999999998799899999881789 No 31 >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltransferase, structural genomics, PSI-2, protein structure initiative; HET: SAH; 1.95A {Agrobacterium tumefaciens str} Probab=96.35 E-value=0.0043 Score=39.69 Aligned_cols=84 Identities=19% Similarity=0.145 Sum_probs=49.2 Q ss_pred HHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHCCCCHHCC-CCHHHC Q ss_conf 9999983888762141007864689888799997418564301210236369789999986411102310110-434444 Q gi|254780410|r 68 ICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASYGDKINWY-TSLADV 146 (362) Q Consensus 68 ~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~~~~v~w~-~~l~~~ 146 (362) .++...+....+-.|+|+|.|+|.++..+.+.. | .-+++-||+|+.+.+.-++++++ +.+. -+..+. T Consensus 23 ~~ll~~~~~~~~~rVLDiGCGtG~~t~~la~~~----~----~~~v~gvD~S~~ml~~A~~~~~~----v~~~~~d~~~~ 90 (259) T 2p35_A 23 RDLLAQVPLERVLNGYDLGCGPGNSTELLTDRY----G----VNVITGIDSDDDMLEKAADRLPN----TNFGKADLATW 90 (259) T ss_dssp HHHHTTCCCSCCSSEEEETCTTTHHHHHHHHHH----C----TTSEEEEESCHHHHHHHHHHSTT----SEEEECCTTTC T ss_pred HHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHC----C----CCEEEEEECCHHHHHHHHHHCCC----CCCEEEEHHHC T ss_conf 999952888898989998162869999999878----9----98799998987999999972566----31201424212 Q ss_pred C--CCCEEEEEECCCCCCC Q ss_conf 5--6956999812288752 Q gi|254780410|r 147 P--LGFTFLVANEFFDSLP 163 (362) Q Consensus 147 ~--~~~~iiiaNE~lDAlP 163 (362) + .....|+||..+--+| T Consensus 91 ~~~~~fD~V~s~~~l~~~~ 109 (259) T 2p35_A 91 KPAQKADLLYANAVFQWVP 109 (259) T ss_dssp CCSSCEEEEEEESCGGGST T ss_pred CCCCCCCEECCCCEEEECC T ss_conf 4354555641201577468 No 32 >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} Probab=96.34 E-value=0.011 Score=36.84 Aligned_cols=81 Identities=16% Similarity=0.137 Sum_probs=49.3 Q ss_pred CCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHCCCCHHCC-CCHHHCC--CCC Q ss_conf 3888762141007864689888799997418564301210236369789999986411102310110-4344445--695 Q gi|254780410|r 74 HGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASYGDKINWY-TSLADVP--LGF 150 (362) Q Consensus 74 ~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~~~~v~w~-~~l~~~~--~~~ 150 (362) ...+++..|+|+|.|+|.++.-+.+ . ..+++-||.|+...+.-+++......++.+. .++.+.+ ... T Consensus 116 ~~~~~~~~vLDiGcG~G~~~~~la~----~------g~~v~gvD~s~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~f 185 (286) T 3m70_A 116 AKIISPCKVLDLGCGQGRNSLYLSL----L------GYDVTSWDHNENSIAFLNETKEKENLNISTALYDINAANIQENY 185 (286) T ss_dssp HHHSCSCEEEEESCTTCHHHHHHHH----T------TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGCCCCSCE T ss_pred CCCCCCCEEEEECCCCCHHHHHHHH----C------CCEEEEEECCHHHHHHHHHHHHHCCCCCEEEECHHHHHCCCCCC T ss_conf 8889969799983779899999985----8------99799998988999999986542266202444002211013567 Q ss_pred EEEEEECCCCCCCE Q ss_conf 69998122887523 Q gi|254780410|r 151 TFLVANEFFDSLPI 164 (362) Q Consensus 151 ~iiiaNE~lDAlPv 164 (362) .+|+|+.+|..+|- T Consensus 186 D~I~~~~~l~~l~~ 199 (286) T 3m70_A 186 DFIVSTVVFMFLNR 199 (286) T ss_dssp EEEEECSSGGGSCG T ss_pred CEEEEEEEEECCCH T ss_conf 57878607763887 No 33 >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Probab=96.28 E-value=0.011 Score=36.90 Aligned_cols=49 Identities=20% Similarity=0.232 Sum_probs=36.6 Q ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHC Q ss_conf 8876214100786468988879999741856430121023636978999998641110 Q gi|254780410|r 76 FPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASY 133 (362) Q Consensus 76 ~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~ 133 (362) .+..-.|+|+|+|.|.++..+|.. . ..+++.||.|+.+.+.-++++... T Consensus 77 ~~~~~~vLDiGcG~G~~~~~ll~~---~------~~~v~~vD~s~~~l~~ar~~~~~~ 125 (241) T 2ex4_A 77 KTGTSCALDCGAGIGRITKRLLLP---L------FREVDMVDITEDFLVQAKTYLGEE 125 (241) T ss_dssp CCCCSEEEEETCTTTHHHHHTTTT---T------CSEEEEEESCHHHHHHHHHHTGGG T ss_pred CCCCCEEEEECCCCCHHHHHHHHC---C------CCEEEEEECCHHHHHHHHHHHHHC T ss_conf 778876999015707869999970---5------998999999999999999877650 No 34 >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} Probab=96.24 E-value=0.027 Score=34.29 Aligned_cols=66 Identities=20% Similarity=0.184 Sum_probs=44.0 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHH Q ss_conf 76711799999999999999983888762141007864689888799997418564301210236369789999986411 Q gi|254780410|r 52 APEISQIFGEMLAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLA 131 (362) Q Consensus 52 sp~is~~Fg~~ia~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~ 131 (362) .|.-.+.|.+.|+. +..+.+-.|+|+|+|+|.++..+.+.. .| .-+++-|++|+.+.+.-+++.. T Consensus 18 rp~y~~~~~~~l~~--------~~~~~~~~VLDiGCGtG~~t~~la~~~---~~----~~~V~gvD~S~~mi~~a~~~~~ 82 (299) T 3g5t_A 18 RPSYPSDFYKMIDE--------YHDGERKLLVDVGCGPGTATLQMAQEL---KP----FEQIIGSDLSATMIKTAEVIKE 82 (299) T ss_dssp SCCCCHHHHHHHHH--------HCCSCCSEEEEETCTTTHHHHHHHHHS---SC----CSEEEEEESCHHHHHHHHHHHH T ss_pred CCCCHHHHHHHHHH--------CCCCCCCEEEEECCCCCHHHHHHHHHC---CC----CCEEEEEECCHHHHHHHHHHHH T ss_conf 89841999999995--------177899969998260889999999964---99----9879998598899999999998 Q ss_pred H Q ss_conf 1 Q gi|254780410|r 132 S 132 (362) Q Consensus 132 ~ 132 (362) . T Consensus 83 ~ 83 (299) T 3g5t_A 83 G 83 (299) T ss_dssp H T ss_pred H T ss_conf 6 No 35 >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} Probab=96.23 E-value=0.073 Score=31.33 Aligned_cols=224 Identities=13% Similarity=0.184 Sum_probs=104.2 Q ss_pred HCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHH---CCCCCCCEEEEECCCCHHHHHHHHHHHHHCCH Q ss_conf 108987864689888888886457671179999999999999998---38887621410078646898887999974185 Q gi|254780410|r 29 VADPEFGYYSTCNPFGAVGDFVTAPEISQIFGEMLAIFLICAWEQ---HGFPSCVRLVELGPGRGIMMLDILRVICKLKP 105 (362) Q Consensus 29 Ly~p~~GYY~~~~~~G~~GDF~Tsp~is~~Fg~~ia~~~~~~~~~---~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p 105 (362) .+.|+.+||+++..- +| +. .|---+-..+++.+-. ...+.+..|+++|.|+|. |+.++++. T Consensus 6 ~~~~~~~y~~~~~~~--------~~-lr-~~~N~vK~~lI~~~~~~~~~~~~~~~~VLDlgcG~Gg---Dl~K~~~~--- 69 (302) T 2vdw_A 6 RLNPEVSYFTNKRTR--------GP-LG-ILSNYVKTLLISMYCSKTFLDDSNKRKVLAIDFGNGA---DLEKYFYG--- 69 (302) T ss_dssp CSSTTCCCBCSSCCC--------HH-HH-HHHHHHHHHHHHHHTCTTTSSCCSCCEEEETTCTTTT---THHHHHHT--- T ss_pred HCCCCCCCCCCCCCC--------CC-HH-HCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECH---HHHHHHHC--- T ss_conf 308654311036656--------86-36-4061889999999987750268889979999500045---27999966--- Q ss_pred HHHHCCCEEEEECCHHHHHHHHHHHHHCCCCHHCCCCHHHCCCCCEEEEEECCCCCCCEEEEEEECCCCEEEEEEEEECC Q ss_conf 64301210236369789999986411102310110434444569569998122887523589991566468998996079 Q gi|254780410|r 106 DFFSVLSIYMVETSERLTLIQKKQLASYGDKINWYTSLADVPLGFTFLVANEFFDSLPIKQFVMTEHGIRERMIDIDQHD 185 (362) Q Consensus 106 ~~~~~l~~~ivE~s~~l~~~Q~~~l~~~~~~v~w~~~l~~~~~~~~iiiaNE~lDAlPv~~~~~~~~~w~E~~V~~~~~~ 185 (362) ..-.|+-|++|+...+.-++|..+...+... ....+.+.-|++.+-.. ...+.+. ..++ T Consensus 70 ---~~~~vvGiDiS~~~I~~A~~R~~~~~~~~~~--------~~~~~~~~~~~~~~d~~------~~~~~~~----~~~~ 128 (302) T 2vdw_A 70 ---EIALLVATDPDADAIARGNERYNKLNSGIKT--------KYYKFDYIQETIRSDTF------VSSVREV----FYFG 128 (302) T ss_dssp ---TCSEEEEEESCHHHHHHHHHHHHHHCC------------CCCEEEEEECCTTSSSH------HHHHHTT----CCSS T ss_pred ---CCCEEEEEECCHHHHHHHHHHHHHHCCCCCC--------CHHCCCCHHHHHHCCHH------HHHHHHH----CCCC T ss_conf ---9988999979899999999999972124331--------00013305999861132------4445530----4789 Q ss_pred CEEECCCCCCCCCCCCCCCCCCCCCEECCCHHHHHHHHHHHHHHHHCCEEEEEECC-C-CCCCCCCC-EEE--E-EC--- Q ss_conf 53522576434322346331656841127934789999999976205705999624-3-36858888-077--6-40--- Q gi|254780410|r 186 SLVFNIGDHEIKSNFLTCSDYFLGAIFENSPCRDREMQSISDRLACDGGTAIVIDY-G-YLQSRVGD-TLQ--A-VK--- 256 (362) Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~g~~~E~~~~~~~~~~~i~~~l~~~~G~~L~iDY-G-y~~~r~~g-TLr--~-y~--- 256 (362) .+ ....+ .+.--+..+- ......++.+++.|+. +|.++.--+ | ........ .-. . +. T Consensus 129 ~F-----------DvVs~-qfalHy~f~~-~~~~~~l~ni~~~Lkp-gG~fi~t~~~~~~i~~~l~~~~~~~~~~~~~~~ 194 (302) T 2vdw_A 129 KF-----------NIIDW-QFAIHYSFHP-RHYATVMNNLSELTAS-GGKVLITTMDGDKLSKLTDKKTFIIHKNLPSSE 194 (302) T ss_dssp CE-----------EEEEE-ESCGGGTCST-TTHHHHHHHHHHHEEE-EEEEEEEEECHHHHTTCCSCEEEECCSSSCTTT T ss_pred CE-----------EEEEE-CCHHHHHCCC-HHHHHHHHHHHHHCCC-CCEEEEEECCHHHHHHHHHHCCCCCCEEEECCC T ss_conf 75-----------69998-1406560885-8999999999961389-968999980699999998725777501222244 Q ss_pred ---------CCCCCCC-CCCCCCCCCC-CCCCHHHHHHHHHHCCCEEECCEEHHHHHHH Q ss_conf ---------5767670-0010003453-1268899999999689836332338999997 Q gi|254780410|r 257 ---------GHTYVSP-LVNPGQADLS-SHVDFQRLSSIAILYKLYINGLTTQGKFLEG 304 (362) Q Consensus 257 ---------~H~~~dp-l~~pG~~DIT-ahVnFs~L~~~a~~~g~~~~g~~sQ~~FL~~ 304 (362) ..+.... +...+ .+++ +-|+|+.|.+.+++.|++.+...+..+|+.. T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~-~~~~EyLV~~~~l~~l~~~~gl~lv~~~~F~~~~~~ 252 (302) T 2vdw_A 195 NYMSVEKIADDRIVVYNPSTMS-TPMTEYIIKKNDIVRVFNEYGFVLVDNVDFATIIER 252 (302) T ss_dssp SEEEECEEETTEEEEBCTTTBS-SCEEEECCCHHHHHHHHHHTTEEEEEEEEHHHHHHH T ss_pred CCCCCCCCCCCCEEEEEECCCC-CCCHHHCCCHHHHHHHHHHCCCEEEEECCHHHHHHH T ss_conf 4334667899878999834456-754654327999999999859899980687999987 No 36 >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* Probab=96.21 E-value=0.037 Score=33.34 Aligned_cols=75 Identities=17% Similarity=0.269 Sum_probs=47.8 Q ss_pred CEEECCCC--CHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHH Q ss_conf 86457671--1799999999999999983888762141007864689888799997418564301210236369789999 Q gi|254780410|r 48 DFVTAPEI--SQIFGEMLAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLI 125 (362) Q Consensus 48 DF~Tsp~i--s~~Fg~~ia~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~ 125 (362) ||...|.+ =.---|++..+.... . ...+..++|+|.|+|.++..+... .|+ .+++.+|+|+...+. T Consensus 81 ~f~v~~~vlIPRpeTE~lv~~~l~~---~-~~~~~~ilDlgtGsG~I~i~la~~----~p~----~~v~a~Dis~~Al~~ 148 (276) T 2b3t_A 81 PLFVSPATLIPRPDTECLVEQALAR---L-PEQPCRILDLGTGTGAIALALASE----RPD----CEIIAVDRMPDAVSL 148 (276) T ss_dssp EEECCTTSCCCCTTHHHHHHHHHHH---S-CSSCCEEEEETCTTSHHHHHHHHH----CTT----SEEEEECSSHHHHHH T ss_pred EEEECCCCCCCCCHHHHHHHHHHHH---C-CCCCCEEEEECCCCHHHHHHHHHH----CCC----CEEEEECCCHHHHHH T ss_conf 7875887706997699999999875---1-457861764146532999999986----898----758864176688999 Q ss_pred HHHHHHHCC Q ss_conf 986411102 Q gi|254780410|r 126 QKKQLASYG 134 (362) Q Consensus 126 Q~~~l~~~~ 134 (362) -+++...++ T Consensus 149 A~~Na~~~~ 157 (276) T 2b3t_A 149 AQRNAQHLA 157 (276) T ss_dssp HHHHHHHHT T ss_pred HHHHHHHCC T ss_conf 999999749 No 37 >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase, structural genomics; 1.90A {Anabaena variabilis atcc 29413} Probab=96.16 E-value=0.0031 Score=40.66 Aligned_cols=47 Identities=11% Similarity=0.147 Sum_probs=34.3 Q ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHH Q ss_conf 888762141007864689888799997418564301210236369789999986411 Q gi|254780410|r 75 GFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLA 131 (362) Q Consensus 75 ~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~ 131 (362) .....-.|+|+|+|.|.++..+.+. -.+++-||.|+.+.+.-+++++ T Consensus 54 ~~~~g~~VLDiGcG~G~~~~~la~~----------~~~v~giD~s~~ml~~a~~~~~ 100 (279) T 3ccf_A 54 NPQPGEFILDLGCGTGQLTEKIAQS----------GAEVLGTDNAATMIEKARQNYP 100 (279) T ss_dssp CCCTTCEEEEETCTTSHHHHHHHHT----------TCEEEEEESCHHHHHHHHHHCT T ss_pred CCCCCCEEEEECCCCCHHHHHHHHC----------CCEEEEEECHHHHHHHHHHHCC T ss_conf 9999699999358585999999964----------9989999163889999986165 No 38 >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* Probab=96.16 E-value=0.05 Score=32.44 Aligned_cols=63 Identities=17% Similarity=0.329 Sum_probs=44.0 Q ss_pred HHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHCC Q ss_conf 999999999999983888762141007864689888799997418564301210236369789999986411102 Q gi|254780410|r 60 GEMLAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASYG 134 (362) Q Consensus 60 g~~ia~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~~ 134 (362) -|++..++...+.... ...|+++|.|+|..+..+.+. |+ .+++.+|+|+...+.-+++...++ T Consensus 108 TE~Lve~~~~~~~~~~---~~~vlDlgtGSG~I~isla~~-----p~----~~V~avDiS~~Al~vA~~Na~~~~ 170 (284) T 1nv8_A 108 TEELVELALELIRKYG---IKTVADIGTGSGAIGVSVAKF-----SD----AIVFATDVSSKAVEIARKNAERHG 170 (284) T ss_dssp HHHHHHHHHHHHHHHT---CCEEEEESCTTSHHHHHHHHH-----SS----CEEEEEESCHHHHHHHHHHHHHTT T ss_pred HHHHHHHHHHHHHCCC---CCEEEEEECCHHHHHHHHHHH-----HC----CCEEEECCCHHHHHHHHHHHHHCC T ss_conf 8999998887650378---867998604605988767652-----01----451676397999999999998448 No 39 >1vl5_A Unknown conserved protein BH2331; 10174951, hypothetical protein, structural genomics, JCSG, protein structure initiative, PSI; HET: MSE; 1.95A {Bacillus halodurans c-125} SCOP: c.66.1.41 Probab=96.12 E-value=0.017 Score=35.57 Aligned_cols=54 Identities=6% Similarity=0.118 Sum_probs=38.5 Q ss_pred HHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHC Q ss_conf 9998388876214100786468988879999741856430121023636978999998641110 Q gi|254780410|r 70 AWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASY 133 (362) Q Consensus 70 ~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~ 133 (362) +.+.++....-.|+|+|+|.|.++..+.+. . -+++-+|.|+.+.+..+++++.. T Consensus 29 l~~~~~l~~~~~VLDiGcG~G~~~~~la~~----~------~~v~g~D~s~~~~~~a~~~~~~~ 82 (260) T 1vl5_A 29 LMQIAALKGNEEVLDVATGGGHVANAFAPF----V------KKVVAFDLTEDILKVARAFIEGN 82 (260) T ss_dssp HHHHHTCCSCCEEEEETCTTCHHHHHHGGG----S------SEEEEEESCHHHHHHHHHHHHHT T ss_pred HHHHCCCCCCCEEEEECCCCCHHHHHHHHH----C------CEEEEEECCHHHHHHHHHCCCCC T ss_conf 999608999299999546471999999972----9------96999989999999866122224 No 40 >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Probab=96.04 E-value=0.046 Score=32.70 Aligned_cols=41 Identities=17% Similarity=0.267 Sum_probs=31.8 Q ss_pred EEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHH Q ss_conf 141007864689888799997418564301210236369789999986411 Q gi|254780410|r 81 RLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLA 131 (362) Q Consensus 81 ~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~ 131 (362) .|+|+|.|+|.++..+.+. -.+++-+|+|+.+.+.-+++.+ T Consensus 44 rVLDiGcG~G~~~~~la~~----------g~~v~gvD~S~~~l~~ar~~~~ 84 (203) T 3h2b_A 44 VILDVGSGTGRWTGHLASL----------GHQIEGLEPATRLVELARQTHP 84 (203) T ss_dssp CEEEETCTTCHHHHHHHHT----------TCCEEEECCCHHHHHHHHHHCT T ss_pred CEEEECCCCCHHHHHHHHC----------CCEEEEEECCHHHHHHHHHCCC T ss_conf 4999737887999999977----------9969999697889999974488 No 41 >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1, methyltransferase domain, structural genomics; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Probab=95.98 E-value=0.013 Score=36.55 Aligned_cols=76 Identities=14% Similarity=0.136 Sum_probs=45.4 Q ss_pred CCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHCCCCHHCCC-CHHHCC--CC-CEEEE Q ss_conf 621410078646898887999974185643012102363697899999864111023101104-344445--69-56999 Q gi|254780410|r 79 CVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASYGDKINWYT-SLADVP--LG-FTFLV 154 (362) Q Consensus 79 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~~~~v~w~~-~l~~~~--~~-~~iii 154 (362) +-.|+|+|.|+|.++..++.. ...+++-+|.|+.+.+.-+++..+...++.++. +..++| ++ ..+|+ T Consensus 24 ~~~VLDiGcG~G~~~~~~~~~---------~~~~v~gvD~S~~~i~~a~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~I~ 94 (209) T 2p8j_A 24 DKTVLDCGAGGDLPPLSIFVE---------DGYKTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLPFKDESMSFVY 94 (209) T ss_dssp CSEEEEESCCSSSCTHHHHHH---------TTCEEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSCCSCTTCEEEEE T ss_pred CCEEEEEECCCCHHHHHHHHH---------CCCEEEEEECCHHHHHHHHHHHHCCCCEEEEECCEEECCCCCCCCCCHHH T ss_conf 898999727889999999985---------89989999597999999986220357436530020223685434233888 Q ss_pred EECCCCCCC Q ss_conf 812288752 Q gi|254780410|r 155 ANEFFDSLP 163 (362) Q Consensus 155 aNE~lDAlP 163 (362) |+..+-.+| T Consensus 95 s~~~l~h~~ 103 (209) T 2p8j_A 95 SYGTIFHMR 103 (209) T ss_dssp ECSCGGGSC T ss_pred HHHHHHCCC T ss_conf 766787288 No 42 >3cc8_A Putative methyltransferase; NP_977653.1, structural genomics, joint center for structural genomics, JCSG; 1.64A {Bacillus cereus atcc 10987} Probab=95.95 E-value=0.012 Score=36.56 Aligned_cols=42 Identities=12% Similarity=0.098 Sum_probs=30.3 Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHH Q ss_conf 7621410078646898887999974185643012102363697899999864 Q gi|254780410|r 78 SCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQ 129 (362) Q Consensus 78 ~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~ 129 (362) ..-+|+|+|.|+|.++..+. +. ..+++-||+|+...+.-+++ T Consensus 32 ~~~~ILDIGcG~G~~~~~l~----~~------~~~v~giD~s~~~i~~a~~~ 73 (230) T 3cc8_A 32 EWKEVLDIGCSSGALGAAIK----EN------GTRVSGIEAFPEAAEQAKEK 73 (230) T ss_dssp TCSEEEEETCTTSHHHHHHH----TT------TCEEEEEESSHHHHHHHHTT T ss_pred CCCEEEEECCCCCHHHHHHH----HC------CCEEEEEECCHHHHHHHHHC T ss_conf 79969995188869999999----75------99899996725666665411 No 43 >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Probab=95.90 E-value=0.036 Score=33.40 Aligned_cols=54 Identities=17% Similarity=0.264 Sum_probs=38.5 Q ss_pred HHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHH Q ss_conf 99983888762141007864689888799997418564301210236369789999986411 Q gi|254780410|r 70 AWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLA 131 (362) Q Consensus 70 ~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~ 131 (362) +.+....|..-.|+|+|+|.|.++..+.+. .|+ .+++-||.|+.+.+.-++... T Consensus 29 ~~~~~~~~pg~rVLDiGcG~G~~~~~la~~----~~~----~~v~gvD~s~~~~~~a~~~~~ 82 (276) T 3mgg_A 29 LHHDTVYPPGAKVLEAGCGIGAQTVILAKN----NPD----AEITSIDISPESLEKARENTE 82 (276) T ss_dssp HHTTCCCCTTCEEEETTCTTSHHHHHHHHH----CTT----SEEEEEESCHHHHHHHHHHHH T ss_pred HHHCCCCCCCCEEEEECCCCCHHHHHHHHH----CCC----CEEEEEECCHHHHHHHHHHHH T ss_conf 875569999998999558588999999987----999----789999795676322221122 No 44 >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} Probab=95.83 E-value=0.013 Score=36.52 Aligned_cols=118 Identities=16% Similarity=0.208 Sum_probs=70.3 Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHCCCCHHCC-CCHHHCC--C-CCEE Q ss_conf 8762141007864689888799997418564301210236369789999986411102310110-4344445--6-9569 Q gi|254780410|r 77 PSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASYGDKINWY-TSLADVP--L-GFTF 152 (362) Q Consensus 77 p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~~~~v~w~-~~l~~~~--~-~~~i 152 (362) +..-.|+|+|.|+|.++..+.+. . ..+++-|+.|+...+.-+++..+. .+++|. .+..++| + ...+ T Consensus 41 ~~~~~iLDiGCG~G~~~~~L~~~------g---~~~v~giD~s~~~i~~~~~~~~~~-~~~~~~~~D~~~l~~~~~sFD~ 110 (215) T 2pxx_A 41 RPEDRILVLGCGNSALSYELFLG------G---FPNVTSVDYSSVVVAAMQACYAHV-PQLRWETMDVRKLDFPSASFDV 110 (215) T ss_dssp CTTCCEEEETCTTCSHHHHHHHT------T---CCCEEEEESCHHHHHHHHHHTTTC-TTCEEEECCTTSCCSCSSCEEE T ss_pred CCCCEEEEECCCCCHHHHHHHHC------C---CCEEEEEECCHHHHHHHHHHHCCC-CEEEEECCCCCCCCCCCCCEEE T ss_conf 99998999637777999999984------8---983999827625667999983478-6354321454457789997789 Q ss_pred EEEECCCCCCCEEEEEEECCCCEEEEEEEEECCCEEECCCCCCCCCCCCCCCCCCCCCEECCCHHHHHHHHHHHHHHHHC Q ss_conf 99812288752358999156646899899607953522576434322346331656841127934789999999976205 Q gi|254780410|r 153 LVANEFFDSLPIKQFVMTEHGIRERMIDIDQHDSLVFNIGDHEIKSNFLTCSDYFLGAIFENSPCRDREMQSISDRLACD 232 (362) Q Consensus 153 iiaNE~lDAlPv~~~~~~~~~w~E~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~E~~~~~~~~~~~i~~~l~~~ 232 (362) |+++..||++.+.. .. ......+........+..+.+.|+. T Consensus 111 Vi~~~~ld~i~~~~-----------------~~---------------------~~~~~~~~~~~~~~~l~e~~r~Lkp- 151 (215) T 2pxx_A 111 VLEKGTLDALLAGE-----------------RD---------------------PWTVSSEGVHTVDQVLSEVSRVLVP- 151 (215) T ss_dssp EEEESHHHHHTTTC-----------------SC---------------------TTSCCHHHHHHHHHHHHHHHHHEEE- T ss_pred EEECCCHHHEECCC-----------------CC---------------------CCCCCCCCHHHHHHHHHHHHHHCCC- T ss_conf 99997454301243-----------------32---------------------2111001243199999999987735- Q ss_pred CEEEEEECCCC Q ss_conf 70599962433 Q gi|254780410|r 233 GGTAIVIDYGY 243 (362) Q Consensus 233 ~G~~L~iDYGy 243 (362) +|.++++.|+. T Consensus 152 gG~~i~~~~~~ 162 (215) T 2pxx_A 152 GGRFISMTSAA 162 (215) T ss_dssp EEEEEEEESCC T ss_pred CCEEEEEECCC T ss_conf 87899995698 No 45 >2i6g_A Putative methyltransferase; 16420133, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MLY; 1.90A {Salmonella typhimurium LT2} SCOP: c.66.1.44 Probab=95.82 E-value=0.042 Score=32.93 Aligned_cols=50 Identities=14% Similarity=0.050 Sum_probs=36.1 Q ss_pred CCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHC Q ss_conf 388876214100786468988879999741856430121023636978999998641110 Q gi|254780410|r 74 HGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASY 133 (362) Q Consensus 74 ~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~ 133 (362) +...++..|+|+|+|+|.++.-+.+. -.+++-+|.|+...+.-+++.+.. T Consensus 27 ~~~l~pgrVLDiGcG~G~~~~~la~~----------g~~v~gvD~s~~~l~~a~~~~~~~ 76 (199) T 2i6g_A 27 AXVVAPGRTLDLGCGNGRNSLYLAAN----------GYDVTAWDXNPASMANLERIXAAE 76 (199) T ss_dssp HTTSCSCEEEEETCTTSHHHHHHHHT----------TCEEEEEESCHHHHHHHHHHHHHT T ss_pred HCCCCCCCEEEECCCCCHHHHHHHHC----------CCEEEEEECCCHHHHHHHHHHHHC T ss_conf 43789896899858897899999854----------998999958718999999864213 No 46 >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, NYSGXRC, structural genomics; 2.00A {Lactobacillus delbrueckii subsp} Probab=95.80 E-value=0.035 Score=33.46 Aligned_cols=95 Identities=24% Similarity=0.317 Sum_probs=53.2 Q ss_pred CHHHHH---HHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHH Q ss_conf 179999---99999999999838887621410078646898887999974185643012102363697899999864111 Q gi|254780410|r 56 SQIFGE---MLAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLAS 132 (362) Q Consensus 56 s~~Fg~---~ia~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~ 132 (362) +..||. --.+-+++.+..... .+-.|+|+|.|+|.++.-+.+ .. .-+++.++.|+...+.-+++... T Consensus 36 ~~aFGtG~H~tT~l~l~~L~~~~~-~~~~VLDlGcGsG~~~~~~ak----~g-----~~~V~~iDis~~al~~A~~N~~~ 105 (205) T 3grz_A 36 GLAFGTGNHQTTQLAMLGIERAMV-KPLTVADVGTGSGILAIAAHK----LG-----AKSVLATDISDESMTAAEENAAL 105 (205) T ss_dssp C-----CCHHHHHHHHHHHHHHCS-SCCEEEEETCTTSHHHHHHHH----TT-----CSEEEEEESCHHHHHHHHHHHHH T ss_pred CCCCCCCCCHHHHHHHHHHHHCCC-CCCEEEEEECCHHHHHHHHHH----CC-----CCEEEEEECCHHHHHHHHHHHHH T ss_conf 446679988899999999983479-959999995262299999987----59-----96899998989999999999997 Q ss_pred CCC-CHHCC-CC-HHHCCCCCEEEEEECCCC Q ss_conf 023-10110-43-444456956999812288 Q gi|254780410|r 133 YGD-KINWY-TS-LADVPLGFTFLVANEFFD 160 (362) Q Consensus 133 ~~~-~v~w~-~~-l~~~~~~~~iiiaNE~lD 160 (362) ... .+... .+ +........+|+||..++ T Consensus 106 n~~~~~~~~~~~~~~~~~~~fD~Ivani~~~ 136 (205) T 3grz_A 106 NGIYDIALQKTSLLADVDGKFDLIVANILAE 136 (205) T ss_dssp TTCCCCEEEESSTTTTCCSCEEEEEEESCHH T ss_pred CCCCCEEEEECCHHHCCCCCCCEEEECCCHH T ss_conf 3766768873434440455568999858788 No 47 >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 Probab=95.79 E-value=0.027 Score=34.24 Aligned_cols=74 Identities=18% Similarity=0.192 Sum_probs=46.7 Q ss_pred CCCCCEEECCCCCHHHHH----HHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECC Q ss_conf 888886457671179999----9999999999983888762141007864689888799997418564301210236369 Q gi|254780410|r 44 GAVGDFVTAPEISQIFGE----MLAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETS 119 (362) Q Consensus 44 G~~GDF~Tsp~is~~Fg~----~ia~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s 119 (362) |+.-.|.|.|-+ ||. .-++.+++ .+..+..-.|+|+|+|+|.++..+.+ .. -+++.+|.| T Consensus 20 g~~~~~~~~~gv---f~~~~~d~~t~~Ll~---~l~~~~~~~vLDiGcG~G~~~~~la~----~~------~~v~~iDis 83 (194) T 1dus_A 20 GKKLKFKTDSGV---FSYGKVDKGTKILVE---NVVVDKDDDILDLGCGYGVIGIALAD----EV------KSTTMADIN 83 (194) T ss_dssp TEEEEEEEETTS---TTTTSCCHHHHHHHH---HCCCCTTCEEEEETCTTSHHHHHHGG----GS------SEEEEEESC T ss_pred CEEEEEECCCCC---CCCCCCCHHHHHHHH---HCCCCCCCEEEEECCCCCHHHHHHHH----HC------CEEEEEECC T ss_conf 907999748987---689986999999998---28988999499956964299999997----38------847998263 Q ss_pred HHHHHHHHHHHHHC Q ss_conf 78999998641110 Q gi|254780410|r 120 ERLTLIQKKQLASY 133 (362) Q Consensus 120 ~~l~~~Q~~~l~~~ 133 (362) +...+.-+++.... T Consensus 84 ~~~i~~a~~n~~~~ 97 (194) T 1dus_A 84 RRAIKLAKENIKLN 97 (194) T ss_dssp HHHHHHHHHHHHHT T ss_pred HHHHHHHHHHHHHH T ss_conf 67889999999981 No 48 >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural genomics consortium, SGC; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 Probab=95.78 E-value=0.058 Score=32.00 Aligned_cols=57 Identities=16% Similarity=0.159 Sum_probs=42.9 Q ss_pred HHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHCC Q ss_conf 9983888762141007864689888799997418564301210236369789999986411102 Q gi|254780410|r 71 WEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASYG 134 (362) Q Consensus 71 ~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~~ 134 (362) ...++....-.|+|+|.|+|.|+..+.+.+. | .-.++-+|.++...+.-++++..+. T Consensus 98 l~~l~I~PG~rVLE~GtGsG~lt~~LAr~vg---p----~G~V~~~D~~~~~~~~Ar~n~~~~~ 154 (336) T 2b25_A 98 LSMMDINPGDTVLEAGSGSGGMSLFLSKAVG---S----QGRVISFEVRKDHHDLAKKNYKHWR 154 (336) T ss_dssp HHHHTCCTTCEEEEECCTTSHHHHHHHHHHC---T----TCEEEEEESSHHHHHHHHHHHHHHH T ss_pred HHHHCCCCCCEEEECCCCCCHHHHHHHHHHC---C----CCEEEEECCCHHHHHHHHHHHHHHH T ss_conf 9985899998899835377799999999628---9----8489984399999999999999743 No 49 >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* Probab=95.78 E-value=0.071 Score=31.39 Aligned_cols=136 Identities=19% Similarity=0.316 Sum_probs=72.5 Q ss_pred HHHHHHHHCCCCCHHH---HHHH---HHCCCCCCC----CCCC-CCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHCCC Q ss_conf 9999998189804999---9998---710898786----4689-888888886457671179999999999999998388 Q gi|254780410|r 8 KIVNLIKKNGQMTVDQ---YFAL---CVADPEFGY----YSTC-NPFGAVGDFVTAPEISQIFGEMLAIFLICAWEQHGF 76 (362) Q Consensus 8 ~i~~~I~~~G~i~f~~---fM~~---aLy~p~~GY----Y~~~-~~~G~~GDF~Tsp~is~~Fg~~ia~~~~~~~~~~~~ 76 (362) ++.+.++..|.|.=.+ =|+. -++=|+ .| |.-. -++| .|-++++|++. ..+.+.++. T Consensus 23 ~lv~~l~~~g~i~~~~v~~a~~~VpRe~Fvp~-~~~~~AY~D~~l~i~-~~~~is~P~~~-----------A~ml~~L~l 89 (235) T 1jg1_A 23 RTVEMLKAEGIIRSKEVERAFLKYPRYLSVED-KYKKYAHIDEPLPIP-AGQTVSAPHMV-----------AIMLEIANL 89 (235) T ss_dssp HHHHHHHHTTSCCSHHHHHHHHHSCGGGGSCG-GGGGGTTSSSCEECS-TTCEECCHHHH-----------HHHHHHHTC T ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCHHHCCCH-HHHHCCCCCCCCCCC-CCCEECHHHHH-----------HHHHHHCCC T ss_conf 99999998599899999999973996443995-677458579983578-99897668999-----------999997048 Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHCC-CCHHCCC-CHHH-CCC-C-CE Q ss_conf 8762141007864689888799997418564301210236369789999986411102-3101104-3444-456-9-56 Q gi|254780410|r 77 PSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASYG-DKINWYT-SLAD-VPL-G-FT 151 (362) Q Consensus 77 p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~~-~~v~w~~-~l~~-~~~-~-~~ 151 (362) ...-.|+|+|+|+|.++.-+-+ +.. -+.+.||.++.+.+.-++++...+ .+|..+. +..+ .+. . .. T Consensus 90 ~~g~~VLeIGsGtGy~ta~la~-l~g--------~~V~~IE~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g~~~~~~fD 160 (235) T 1jg1_A 90 KPGMNILEVGTGSGWNAALISE-IVK--------TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKAPYD 160 (235) T ss_dssp CTTCCEEEECCTTSHHHHHHHH-HHC--------SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEE T ss_pred CCCCEEEEECCCCCHHHHHHHH-HCC--------CEEEEEEECHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCC T ss_conf 9998799947887678999998-649--------7399996288999999999998099716999887001666557634 Q ss_pred EEEEECCCCCCCEE Q ss_conf 99981228875235 Q gi|254780410|r 152 FLVANEFFDSLPIK 165 (362) Q Consensus 152 iiiaNE~lDAlPv~ 165 (362) .|+.+--.+.+|-. T Consensus 161 ~I~v~~a~~~ip~~ 174 (235) T 1jg1_A 161 VIIVTAGAPKIPEP 174 (235) T ss_dssp EEEECSBBSSCCHH T ss_pred EEEEECCHHHCCHH T ss_conf 36761465543499 No 50 >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} Probab=95.77 E-value=0.048 Score=32.56 Aligned_cols=56 Identities=13% Similarity=0.120 Sum_probs=40.2 Q ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHC--CCCHHCC Q ss_conf 8876214100786468988879999741856430121023636978999998641110--2310110 Q gi|254780410|r 76 FPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASY--GDKINWY 140 (362) Q Consensus 76 ~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~--~~~v~w~ 140 (362) .+..-.|+|+|.|+|.++..+.+. ...+++-|++|+.+.+.-+++..+. .++|.|+ T Consensus 44 l~~~~rVLDlGCG~G~~~~~La~~---------~~~~v~gvD~S~~ml~~a~~~~~~~~~~~~v~~~ 101 (257) T 3f4k_A 44 LTDDAKIADIGCGTGGQTLFLADY---------VKGQITGIDLFPDFIEIFNENAVKANCADRVKGI 101 (257) T ss_dssp CCTTCEEEEETCTTSHHHHHHHHH---------CCSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEE T ss_pred CCCCCEEEEECCCCCHHHHHHHHH---------CCCEEEEEECCHHHHHHHHHHHHHHHHHCCHHHH T ss_conf 999797999717797999999986---------6997999968456778889877643210000111 No 51 >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA; HET: SAH; 2.60A {Thermus thermophilus HB8} Probab=95.72 E-value=0.078 Score=31.11 Aligned_cols=60 Identities=22% Similarity=0.249 Sum_probs=39.5 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHH Q ss_conf 9999999999999998388876214100786468988879999741856430121023636978999998641 Q gi|254780410|r 58 IFGEMLAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQL 130 (362) Q Consensus 58 ~Fg~~ia~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l 130 (362) -.|..+..+..+..+.+- |....|+|+|.|.|.++.-+ + ...++-+|+|+.+.+.-+++. T Consensus 17 ~~g~~~~~~~~~~~~~~l-~~g~~iLDiGCG~G~~~~~l--------~----~~~v~g~D~s~~~l~~A~~~~ 76 (211) T 2gs9_A 17 PLGAYVIAEEERALKGLL-PPGESLLEVGAGTGYWLRRL--------P----YPQKVGVEPSEAMLAVGRRRA 76 (211) T ss_dssp HHHHHHHHHHHHHHHTTC-CCCSEEEEETCTTCHHHHHC--------C----CSEEEEECCCHHHHHHHHHHC T ss_pred CCCHHHHHHHHHHHHHHC-CCCCEEEEECCCCHHHHHHC--------C----CCCEEEEECCHHHHHHHHHCC T ss_conf 755789999999999857-99998999899860999973--------7----686899838999999876336 No 52 >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* Probab=95.64 E-value=0.11 Score=30.00 Aligned_cols=105 Identities=15% Similarity=0.216 Sum_probs=58.7 Q ss_pred HHHHHHCCCCCHH---HHHHH---HHCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHC--CCCCCCE Q ss_conf 9999818980499---99998---71089878646898888888864576711799999999999999983--8887621 Q gi|254780410|r 10 VNLIKKNGQMTVD---QYFAL---CVADPEFGYYSTCNPFGAVGDFVTAPEISQIFGEMLAIFLICAWEQH--GFPSCVR 81 (362) Q Consensus 10 ~~~I~~~G~i~f~---~fM~~---aLy~p~~GYY~~~~~~G~~GDF~Tsp~is~~Fg~~ia~~~~~~~~~~--~~p~~~~ 81 (362) .+.++..|-|.=. +=|+. ..|-|+.=|.-+.-++|. |=++++|.+. ..+.+.+ .....-. T Consensus 13 v~~l~~~g~i~~~~v~~a~~~vpRe~Fvp~~aY~D~~~~i~~-~~~is~P~~~-----------a~~le~L~~~~~pg~~ 80 (226) T 1i1n_A 13 IHNLRKNGIIKTDKVFEVMLATDRSHYAKCNPYMDSPQSIGF-QATISAPHMH-----------AYALELLFDQLHEGAK 80 (226) T ss_dssp HHHHHHTTSCCSHHHHHHHHTSCGGGTCSSCTTSSSCEEEET-TEEECCHHHH-----------HHHHHHTTTTSCTTCE T ss_pred HHHHHHCCCCCCHHHHHHHHHCCHHHCCCCCCCCCCCCCCCC-CCEECHHHHH-----------HHHHHHHHHHCCCCCE T ss_conf 999997699799999999983999885985358888726889-9775588999-----------9999972530899998 Q ss_pred EEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHC Q ss_conf 4100786468988879999741856430121023636978999998641110 Q gi|254780410|r 82 LVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASY 133 (362) Q Consensus 82 ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~ 133 (362) |+|+|+|+|.++.-+.+.. .| .-+.+-||.++.+.+.-++++... T Consensus 81 VLdiG~GsGy~ta~la~lv---g~----~g~V~~iE~~~~l~~~a~~~l~~~ 125 (226) T 1i1n_A 81 ALDVGSGSGILTACFARMV---GC----TGKVIGIDHIKELVDDSVNNVRKD 125 (226) T ss_dssp EEEETCTTSHHHHHHHHHH---CT----TCEEEEEESCHHHHHHHHHHHHHH T ss_pred EEEECCCCCHHHHHHHHHC---CC----CCEEEEECCCHHHHHHHHHHHHHC T ss_conf 9997788899999999970---88----864999868899999999998654 No 53 >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold; HET: SAM; 2.00A {Mycobacterium tuberculosis H37RV} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* Probab=95.63 E-value=0.11 Score=30.15 Aligned_cols=61 Identities=15% Similarity=0.134 Sum_probs=44.0 Q ss_pred HHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHC Q ss_conf 9999999998388876214100786468988879999741856430121023636978999998641110 Q gi|254780410|r 64 AIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASY 133 (362) Q Consensus 64 a~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~ 133 (362) .+-+..+.+.++....-+|+|+|.|.|.++.-+.+.. -.++.-|+.|+...+.-+++..+. T Consensus 76 ~~k~~~i~~~l~l~~g~rVLDIGCG~G~~a~~~a~~~---------g~~v~gi~is~~q~~~a~~~~~~~ 136 (318) T 2fk8_A 76 YAKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERF---------DVNVIGLTLSKNQHARCEQVLASI 136 (318) T ss_dssp HHHHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHH---------CCEEEEEESCHHHHHHHHHHHHTS T ss_pred HHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHC---------CCEEEEEECCHHHHHHHHHHHHHC T ss_conf 9999999996399999989897887369999999836---------963899989999999999998763 No 54 >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly, inter-subunit disulfide bridge; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 Probab=95.61 E-value=0.087 Score=30.81 Aligned_cols=66 Identities=23% Similarity=0.243 Sum_probs=44.1 Q ss_pred CCCEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHH Q ss_conf 88864576711799999999999999983888762141007864689888799997418564301210236369789999 Q gi|254780410|r 46 VGDFVTAPEISQIFGEMLAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLI 125 (362) Q Consensus 46 ~GDF~Tsp~is~~Fg~~ia~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~ 125 (362) .|-++++|++. ..+.+.+.....-.|+|+|+|+|.++.-+-+ + . -+.+-+|.++.+.+. T Consensus 49 ~g~~~s~p~~~-----------a~~l~~L~l~~g~~VLeIG~GsGy~ta~La~-l---~------~~V~~vE~~~~~~~~ 107 (231) T 1vbf_A 49 PGINTTALNLG-----------IFMLDELDLHKGQKVLEIGTGIGYYTALIAE-I---V------DKVVSVEINEKMYNY 107 (231) T ss_dssp TTEEECCHHHH-----------HHHHHHTTCCTTCEEEEECCTTSHHHHHHHH-H---S------SEEEEEESCHHHHHH T ss_pred CCCEECCHHHH-----------HHHHHHCCCCCCCEEEEECCCCCHHHHHHHH-H---C------CEEEEECCCHHHHHH T ss_conf 99610148999-----------9999971899979899977987788999998-5---6------787676289999999 Q ss_pred HHHHHHH Q ss_conf 9864111 Q gi|254780410|r 126 QKKQLAS 132 (362) Q Consensus 126 Q~~~l~~ 132 (362) -++++.. T Consensus 108 A~~~~~~ 114 (231) T 1vbf_A 108 ASKLLSY 114 (231) T ss_dssp HHHHHTT T ss_pred HHHHHCC T ss_conf 9987406 No 55 >3dmg_A Probable ribosomal RNA small subunit methyltransferase; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* Probab=95.58 E-value=0.044 Score=32.83 Aligned_cols=43 Identities=26% Similarity=0.377 Sum_probs=22.8 Q ss_pred CEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHH Q ss_conf 21410078646898887999974185643012102363697899999864111 Q gi|254780410|r 80 VRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLAS 132 (362) Q Consensus 80 ~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~ 132 (362) -+|+|+|.|+|.++..+++. . .+++.+|.|+...+.-++++.. T Consensus 235 ~~VLDlGcG~G~~~~~la~~----~------~~v~~vD~s~~~l~~a~~~~~~ 277 (381) T 3dmg_A 235 RQVLDLGAGYGALTLPLARM----G------AEVVGVEDDLASVLSLQKGLEA 277 (381) T ss_dssp CEEEEETCTTSTTHHHHHHT----T------CEEEEEESBHHHHHHHHHHHHH T ss_pred CEEEEEEEECCHHHHHHHHC----C------CEEECCCCCHHHHHHHHHHHHH T ss_conf 98999960104888976751----9------8874146999999999999998 No 56 >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Probab=95.57 E-value=0.051 Score=32.36 Aligned_cols=44 Identities=18% Similarity=0.212 Sum_probs=32.5 Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHH Q ss_conf 76214100786468988879999741856430121023636978999998641 Q gi|254780410|r 78 SCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQL 130 (362) Q Consensus 78 ~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l 130 (362) ++..|+|+|+|.|..+..+++. . ..+++-|+.|+.+.+.-+++. T Consensus 44 ~g~~VLDiGcG~G~~~~~l~~~----g-----~~~v~giD~S~~~i~~a~~~~ 87 (253) T 3g5l_A 44 NQKTVLDLGCGFGWHCIYAAEH----G-----AKKVLGIDLSERMLTEAKRKT 87 (253) T ss_dssp TTCEEEEETCTTCHHHHHHHHT----T-----CSEEEEEESCHHHHHHHHHHC T ss_pred CCCEEEEECCCCCHHHHHHHHC----C-----CCEEEEEECCCHHHHHHHHHH T ss_conf 9698999837784999999964----9-----998999948506568998740 No 57 >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum dsm 1728} SCOP: c.66.1.13 Probab=95.57 E-value=0.017 Score=35.67 Aligned_cols=59 Identities=20% Similarity=0.215 Sum_probs=44.3 Q ss_pred HHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHCC Q ss_conf 999983888762141007864689888799997418564301210236369789999986411102 Q gi|254780410|r 69 CAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASYG 134 (362) Q Consensus 69 ~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~~ 134 (362) .+...++.-..-.|+|+|+|+|.|+.-+++.+.. .-+++.+|.++...+.-++++..+. T Consensus 101 ~Ii~~l~i~PG~rVLEiG~GsG~lt~~LA~~v~~-------~g~V~~vD~~e~~~~~A~~n~~~~~ 159 (275) T 1yb2_A 101 YIIMRCGLRPGMDILEVGVGSGNMSSYILYALNG-------KGTLTVVERDEDNLKKAMDNLSEFY 159 (275) T ss_dssp -----CCCCTTCEEEEECCTTSHHHHHHHHHHTT-------SSEEEEECSCHHHHHHHHHHHHTTS T ss_pred HHHHHCCCCCCCEEEEECCCCCHHHHHHHHHCCC-------CCEEEEEECCHHHHHHHHHHHHHHC T ss_conf 9999719999798999577187899999986089-------9589999088999999998677631 No 58 >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomics, JCSG, PSI, protein structure initiative; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 Probab=95.56 E-value=0.084 Score=30.89 Aligned_cols=58 Identities=17% Similarity=0.294 Sum_probs=44.6 Q ss_pred HHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHCC Q ss_conf 99983888762141007864689888799997418564301210236369789999986411102 Q gi|254780410|r 70 AWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASYG 134 (362) Q Consensus 70 ~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~~ 134 (362) +...++....-.|+|+|+|+|.++..+++.+. | .-+++.+|.++.+.+.-++++..++ T Consensus 104 Ii~~ldi~pG~~VLDiG~GsG~lt~~lA~~v~---~----~g~V~~~D~~~~~~~~A~~n~~~~g 161 (277) T 1o54_A 104 IAMMLDVKEGDRIIDTGVGSGAMCAVLARAVG---S----SGKVFAYEKREEFAKLAESNLTKWG 161 (277) T ss_dssp HHHHTTCCTTCEEEEECCTTSHHHHHHHHHTT---T----TCEEEEECCCHHHHHHHHHHHHHTT T ss_pred HHHHHCCCCCCEEEECCCCCHHHHHHHHHHCC---C----CEEEEEEECCHHHHHHHHHHHHHCC T ss_conf 99980899999899768882799999998518---9----8099999688999999999899749 No 59 >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Probab=95.52 E-value=0.064 Score=31.71 Aligned_cols=80 Identities=14% Similarity=0.181 Sum_probs=46.4 Q ss_pred HHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHCCCCHHCC-CCHHHC-CC- Q ss_conf 983888762141007864689888799997418564301210236369789999986411102310110-434444-56- Q gi|254780410|r 72 EQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASYGDKINWY-TSLADV-PL- 148 (362) Q Consensus 72 ~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~~~~v~w~-~~l~~~-~~- 148 (362) ..+..+..-.|+|+|+|+|.++..+.+ . ..+++-+|.|+.+.+.-+++.... ..+.|. .++.+. +. T Consensus 45 ~~l~~~~~~~vLDvGcG~G~~~~~la~----~------~~~v~gvD~s~~~l~~a~~~~~~~-~~i~~~~~d~~~~~~~~ 113 (216) T 3ofk_A 45 LSLSSGAVSNGLEIGCAAGAFTEKLAP----H------CKRLTVIDVMPRAIGRACQRTKRW-SHISWAATDILQFSTAE 113 (216) T ss_dssp HHTTTSSEEEEEEECCTTSHHHHHHGG----G------EEEEEEEESCHHHHHHHHHHTTTC-SSEEEEECCTTTCCCSC T ss_pred HHCCCCCCCEEEEEECCCCHHHHHHHH----H------CCEEEEEECCHHHHHHHHHHHCCC-CEEECCCCCHHHHCCCC T ss_conf 847998999099963889899999997----0------998999969989999999861546-22310102022323578 Q ss_pred CCEEEEEECCCCCC Q ss_conf 95699981228875 Q gi|254780410|r 149 GFTFLVANEFFDSL 162 (362) Q Consensus 149 ~~~iiiaNE~lDAl 162 (362) ...+|+++++|--+ T Consensus 114 ~fD~V~~~~vl~~~ 127 (216) T 3ofk_A 114 LFDLIVVAEVLYYL 127 (216) T ss_dssp CEEEEEEESCGGGS T ss_pred CCCEEEECCCHHHC T ss_conf 71489984557758 No 60 >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI, nysgxrc; 2.50A {Clostridium acetobutylicum atcc 824} SCOP: c.66.1.43 Probab=95.45 E-value=0.059 Score=31.97 Aligned_cols=65 Identities=15% Similarity=0.172 Sum_probs=43.7 Q ss_pred HHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHCCCCHHC Q ss_conf 9999999998388876214100786468988879999741856430121023636978999998641110231011 Q gi|254780410|r 64 AIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASYGDKINW 139 (362) Q Consensus 64 a~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~~~~v~w 139 (362) +.++.+.+.+.+. .+-+|+|+|.|+|.++..+.+ .. .+++-||.|+.+.+.-+++.++...++.| T Consensus 24 ~~~~~~~~~~~~~-~~~~iLDlGCGtG~~~~~l~~----~g------~~v~gvD~S~~ml~~a~~~~~~~~~~~~~ 88 (246) T 1y8c_A 24 SDFIIEKCVENNL-VFDDYLDLACGTGNLTENLCP----KF------KNTWAVDLSQEMLSEAENKFRSQGLKPRL 88 (246) T ss_dssp HHHHHHHHHTTTC-CTTEEEEETCTTSTTHHHHGG----GS------SEEEEECSCHHHHHHHHHHHHHTTCCCEE T ss_pred HHHHHHHHHHHCC-CCCEEEEEECCCCHHHHHHHH----CC------CEEEEEECCHHHHHHHHHHCCCCCCCCCC T ss_conf 9999999997389-989299980746299999997----49------95999967499999876311223443222 No 61 >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Probab=95.43 E-value=0.098 Score=30.44 Aligned_cols=92 Identities=20% Similarity=0.207 Sum_probs=56.5 Q ss_pred HHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHCCCC------ Q ss_conf 99999999998388876214100786468988879999741856430121023636978999998641110231------ Q gi|254780410|r 63 LAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASYGDK------ 136 (362) Q Consensus 63 ia~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~~~~------ 136 (362) -..++.+.++..+ .-.|+|+|+|+|.++.-+.+. .| ..+++.+|.|+.+.+.-+++++..... T Consensus 17 r~~~v~~~l~~~~---~~rVLDvGcG~G~~~~~l~~~----~~----~~~v~gvD~s~~~l~~A~~~~~~~~~~~~~~~~ 85 (217) T 3jwh_A 17 RMNGVVAALKQSN---ARRVIDLGCGQGNLLKILLKD----SF----FEQITGVDVSYRSLEIAQERLDRLRLPRNQWER 85 (217) T ss_dssp HHHHHHHHHHHTT---CCEEEEETCTTCHHHHHHHHC----TT----CSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTT T ss_pred HHHHHHHHHHCCC---CCEEEEEECCCCHHHHHHHHH----CC----CCEEECCCCCHHHHHHHHHHHHHCCCCCCCCCC T ss_conf 9999999733218---398999818887999999984----76----522521038999999999988762453112222 Q ss_pred HHC-CCCHHHC--C-CCCEEEEEECCCCCCCEE Q ss_conf 011-0434444--5-695699981228875235 Q gi|254780410|r 137 INW-YTSLADV--P-LGFTFLVANEFFDSLPIK 165 (362) Q Consensus 137 v~w-~~~l~~~--~-~~~~iiiaNE~lDAlPv~ 165 (362) +.. ..+.... + ....+|++.++|..+|-. T Consensus 86 ~~~~~~~~~~~~~~~~~fD~I~~~~vl~hl~~~ 118 (217) T 3jwh_A 86 LQLIQGALTYQDKRFHGYDAATVIEVIEHLDLS 118 (217) T ss_dssp EEEEECCTTSCCGGGCSCSEEEEESCGGGCCHH T ss_pred CCCCCCCHHHCHHCCCCCCEEEEEHHHHCCCHH T ss_conf 100126643440004765655010338718978 No 62 >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 Probab=95.36 E-value=0.11 Score=29.99 Aligned_cols=152 Identities=12% Similarity=0.116 Sum_probs=76.8 Q ss_pred CCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHCC--CCHHCCCCHHHCCCCCE Q ss_conf 3888762141007864689888799997418564301210236369789999986411102--31011043444456956 Q gi|254780410|r 74 HGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASYG--DKINWYTSLADVPLGFT 151 (362) Q Consensus 74 ~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~~--~~v~w~~~l~~~~~~~~ 151 (362) ++....-.|+|+|.|+|.++..+.+. + ..+++-||.|+.+.+.-+++....+ ++|.+ T Consensus 32 l~l~pg~rVLDiGcG~G~~~~~la~~-----~----~~~v~gvD~s~~~l~~a~~~~~~~gl~~~v~~------------ 90 (256) T 1nkv_A 32 LRMKPGTRILDLGSGSGEMLCTWARD-----H----GITGTGIDMSSLFTAQAKRRAEELGVSERVHF------------ 90 (256) T ss_dssp TCCCTTCEEEEETCTTCHHHHHHHHH-----T----CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEE------------ T ss_pred CCCCCCCEEEEECCCCCHHHHHHHHH-----C----CCEEEEEECCHHHHHHHHHHHHHHCCCCCCCC------------ T ss_conf 08999999999858888899999986-----4----99899998983677899886776065544441------------ Q ss_pred EEEEECCCCCCCEEEEEEECCCCEEEEEEEEECCCEEECCCCCCCCCCCCCCCCCCCCCEECCCHHHHHHHHHHHHHHHH Q ss_conf 99981228875235899915664689989960795352257643432234633165684112793478999999997620 Q gi|254780410|r 152 FLVANEFFDSLPIKQFVMTEHGIRERMIDIDQHDSLVFNIGDHEIKSNFLTCSDYFLGAIFENSPCRDREMQSISDRLAC 231 (362) Q Consensus 152 iiiaNE~lDAlPv~~~~~~~~~w~E~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~E~~~~~~~~~~~i~~~l~~ 231 (362) +.+ ...+-+|-..| -..+.. + ..+..+.....++.+...|+. T Consensus 91 -~~~-d~~~~~~~~~f--------D~v~~~---~-------------------------~~~~~~~~~~~l~~~~r~Lkp 132 (256) T 1nkv_A 91 -IHN-DAAGYVANEKC--------DVAACV---G-------------------------ATWIAGGFAGAEELLAQSLKP 132 (256) T ss_dssp -EES-CCTTCCCSSCE--------EEEEEE---S-------------------------CGGGTSSSHHHHHHHTTSEEE T ss_pred -CCC-CHHHCCCCCCE--------EEEEEE---C-------------------------CEECCCCHHHHHHHHHHHCCC T ss_conf -136-36450567844--------699997---4-------------------------410268999999999997393 Q ss_pred CCEEEEEECCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEECCE Q ss_conf 57059996243368588880776405767670001000345312688999999996898363323 Q gi|254780410|r 232 DGGTAIVIDYGYLQSRVGDTLQAVKGHTYVSPLVNPGQADLSSHVDFQRLSSIAILYKLYINGLT 296 (362) Q Consensus 232 ~~G~~L~iDYGy~~~r~~gTLr~y~~H~~~dpl~~pG~~DITahVnFs~L~~~a~~~g~~~~g~~ 296 (362) +|.+++.|...........+. ...+............+...++++|+.++... T Consensus 133 -gG~l~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~t~~~~~~~~~~aGf~~v~~~ 185 (256) T 1nkv_A 133 -GGIMLIGEPYWRQLPATEEIA-----------QACGVSSTSDFLTLPGLVGAFDDLGYDVVEMV 185 (256) T ss_dssp -EEEEEEEEEEETTCCSSHHHH-----------HTTTCSCGGGSCCHHHHHHHHHTTTBCCCEEE T ss_pred -CCEEEEEECCCCCCCCCHHHH-----------HHHCCCCCCCCCCHHHHHHHHHHCCCEEEEEE T ss_conf -868999966445789817899-----------87255787677899999999998599899999 No 63 >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A Probab=95.31 E-value=0.035 Score=33.47 Aligned_cols=49 Identities=8% Similarity=0.032 Sum_probs=36.2 Q ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHC Q ss_conf 8876214100786468988879999741856430121023636978999998641110 Q gi|254780410|r 76 FPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASY 133 (362) Q Consensus 76 ~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~ 133 (362) .++.-.|+|+|.|.|..+..+.+ .. ..+++-||+|+.+.+.-+++.++. T Consensus 44 l~~~~~VLDIGCG~G~~~~~lA~----~~-----~~~V~giD~s~~~l~~a~~~~~~~ 92 (267) T 3kkz_A 44 LTEKSLIADIGCGTGGQTMVLAG----HV-----TGQVTGLDFLSGFIDIFNRNARQS 92 (267) T ss_dssp CCTTCEEEEETCTTCHHHHHHHT----TC-----SSEEEEEESCHHHHHHHHHHHHHT T ss_pred CCCCCEEEEECCCCCHHHHHHHH----HC-----CCEEEEEECCCHHHHHHHHHCCCC T ss_conf 99999899962789799999997----47-----998999979731658988732323 No 64 >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A Probab=95.25 E-value=0.052 Score=32.32 Aligned_cols=53 Identities=25% Similarity=0.237 Sum_probs=35.8 Q ss_pred HHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHH Q ss_conf 99999983888762141007864689888799997418564301210236369789999986411 Q gi|254780410|r 67 LICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLA 131 (362) Q Consensus 67 ~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~ 131 (362) +++.+.....|. .|+|+|+|.|.++.-+. +.. .+++-||+|+.+.+.-++++. T Consensus 33 ~~~~~~~~~~~~--~VLDiGCG~G~~~~~l~----~~~------~~v~giD~s~~~l~~a~~~~~ 85 (250) T 2p7i_A 33 MVRAFTPFFRPG--NLLELGSFKGDFTSRLQ----EHF------NDITCVEASEEAISHAQGRLK 85 (250) T ss_dssp HHHHHGGGCCSS--CEEEESCTTSHHHHHHT----TTC------SCEEEEESCHHHHHHHHHHSC T ss_pred HHHHHHCCCCCC--CEEEEECCCCHHHHHHH----HHC------CEEEEEECCHHHHHHHHHHHH T ss_conf 999853107999--39999289879999999----509------979999671688889998630 No 65 >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima MSB8} SCOP: c.66.1.41 Probab=95.05 E-value=0.058 Score=32.00 Aligned_cols=44 Identities=18% Similarity=0.360 Sum_probs=32.2 Q ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHH Q ss_conf 887621410078646898887999974185643012102363697899999864 Q gi|254780410|r 76 FPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQ 129 (362) Q Consensus 76 ~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~ 129 (362) .+++-.|+|+|+|+|.++..+.+ . ..+++-+|.|+.+.+.-+++ T Consensus 52 ~~~~~~VLDiGCGtG~~~~~la~----~------g~~v~giD~S~~ml~~Ak~~ 95 (260) T 2avn_A 52 LKNPCRVLDLGGGTGKWSLFLQE----R------GFEVVLVDPSKEMLEVAREK 95 (260) T ss_dssp CCSCCEEEEETCTTCHHHHHHHT----T------TCEEEEEESCHHHHHHHHHH T ss_pred CCCCCEEEEECCCCCHHHHHHHH----C------CCEEEEEECHHHHHHHHHHH T ss_conf 79969899989999888999986----1------99899993523788999883 No 66 >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Probab=95.00 E-value=0.077 Score=31.17 Aligned_cols=44 Identities=18% Similarity=0.171 Sum_probs=31.8 Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHH Q ss_conf 876214100786468988879999741856430121023636978999998641 Q gi|254780410|r 77 PSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQL 130 (362) Q Consensus 77 p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l 130 (362) +..-.|+|+|.|+|.++..+.+. ..+++-++.|+.+.+.-+++. T Consensus 52 ~~~~~VLDiGcG~G~~~~~l~~~----------~~~v~giD~s~~~l~~a~~~~ 95 (242) T 3l8d_A 52 KKEAEVLDVGCGDGYGTYKLSRT----------GYKAVGVDISEVMIQKGKERG 95 (242) T ss_dssp CTTCEEEEETCTTSHHHHHHHHT----------TCEEEEEESCHHHHHHHHTTT T ss_pred CCCCEEEEECCCCCHHHHHHHHC----------CCEEEEEECCHHHHHHHHHCC T ss_conf 99697999658885999999964----------998999979746679987503 No 67 >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* Probab=94.99 E-value=0.075 Score=31.22 Aligned_cols=94 Identities=17% Similarity=0.248 Sum_probs=58.2 Q ss_pred CCCCCCCCCCCCC-CCCEEEC----------CCCCHHHHHHHH--------HHHHHHHHHCCCCCCCEEEEECCCCHHHH Q ss_conf 8786468988888-8886457----------671179999999--------99999999838887621410078646898 Q gi|254780410|r 33 EFGYYSTCNPFGA-VGDFVTA----------PEISQIFGEMLA--------IFLICAWEQHGFPSCVRLVELGPGRGIMM 93 (362) Q Consensus 33 ~~GYY~~~~~~G~-~GDF~Ts----------p~is~~Fg~~ia--------~~~~~~~~~~~~p~~~~ivE~GaG~G~La 93 (362) .+|++.-.+.+|+ .||.+++ |.+.... ..+- .-+..+...++....-.|+|+|+|+|.++ T Consensus 30 ~~G~~~~~~iig~~~G~~v~~~~g~~~~~~~p~~~~~~-~~~~r~~qiiyp~d~~~Ii~~l~i~pG~rVLd~G~GsG~lt 108 (255) T 3mb5_A 30 DLGILKLEEIIGRNFGEAIKSHKGHEFKILRPRIVDYL-DKMKRGPQIVHPKDAALIVAYAGISPGDFIVEAGVGSGALT 108 (255) T ss_dssp TTEEEEGGGGTTCCTTCEEECTTCCEEEEECCCHHHHH-HHSCCCSCCCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHH T ss_pred CCEEEEHHHHCCCCCCCEEEECCCCEEEEECCCHHHHH-HHCCCCCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCHHHH T ss_conf 88888789962999981999589978999589989998-41878874658899999999719898998998886627999 Q ss_pred HHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHCC Q ss_conf 88799997418564301210236369789999986411102 Q gi|254780410|r 94 LDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASYG 134 (362) Q Consensus 94 ~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~~ 134 (362) ..+.+... | .-+++.+|.|+.+.+.-++++...+ T Consensus 109 ~~lar~~~---~----~G~V~~~D~~~~~~~~A~~n~~~~g 142 (255) T 3mb5_A 109 LFLANIVG---P----EGRVVSYEIREDFAKLAWENIKWAG 142 (255) T ss_dssp HHHHHHHC---T----TSEEEEECSCHHHHHHHHHHHHHHT T ss_pred HHHHHHCC---C----CCEEEEECCCHHHHHHHHHHHHHCC T ss_conf 99997438---8----9779983499999999999999719 No 68 >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* Probab=94.96 E-value=0.16 Score=29.02 Aligned_cols=68 Identities=18% Similarity=0.202 Sum_probs=47.4 Q ss_pred HHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHCC--CCHH Q ss_conf 99999999999983888762141007864689888799997418564301210236369789999986411102--3101 Q gi|254780410|r 61 EMLAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASYG--DKIN 138 (362) Q Consensus 61 ~~ia~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~~--~~v~ 138 (362) +.+|.++...+..... .-.|+++|+|.|.++.-+.+. ..+++.||.|+...+.-+++....+ ++|. T Consensus 63 e~ia~~ia~~~~~~~~--~~~vlD~gcG~G~~~~~la~~----------~~~v~~iD~s~~~i~~a~~n~~~~~~~~~i~ 130 (241) T 3gdh_A 63 EKIAEHIAGRVSQSFK--CDVVVDAFCGVGGNTIQFALT----------GMRVIAIDIDPVKIALARNNAEVYGIADKIE 130 (241) T ss_dssp HHHHHHHHHHHHHHSC--CSEEEETTCTTSHHHHHHHHT----------TCEEEEEESCHHHHHHHHHHHHHTTCGGGEE T ss_pred HHHHHHHHHHHHHCCC--CCEEEECCCCCCHHHHHHHHC----------CCEEEEEECCHHHHHHHHHHHHHCCCCCCEE T ss_conf 9999999998650289--998999378736889999967----------9989999897788899999999849987439 Q ss_pred CC Q ss_conf 10 Q gi|254780410|r 139 WY 140 (362) Q Consensus 139 w~ 140 (362) ++ T Consensus 131 ~~ 132 (241) T 3gdh_A 131 FI 132 (241) T ss_dssp EE T ss_pred EE T ss_conf 99 No 69 >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 Probab=94.94 E-value=0.017 Score=35.63 Aligned_cols=74 Identities=16% Similarity=0.241 Sum_probs=51.1 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHCCCCH Q ss_conf 99999999999999983888762141007864689888799997418564301210236369789999986411102310 Q gi|254780410|r 58 IFGEMLAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASYGDKI 137 (362) Q Consensus 58 ~Fg~~ia~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~~~~v 137 (362) ++||+.-..+.++++.++....-.++++|.|.|.++..+.... ...+.+=||.|+.+.+.-+++..++.... T Consensus 222 vYGE~~p~~i~~Il~~l~Lkpgd~fLDLGCG~G~vvl~aA~~~--------g~~~viGIDis~~~l~~A~~~~~e~~~~~ 293 (433) T 1u2z_A 222 VYGELLPNFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALEC--------GCALSFGCEIMDDASDLTILQYEELKKRC 293 (433) T ss_dssp CCCCBCHHHHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHH--------CCSEEEEEECCHHHHHHHHHHHHHHHHHH T ss_pred EECCCCHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHC--------CCCEEEEEECCHHHHHHHHHHHHHHHHHH T ss_conf 3000688999999998289999989974899989999999975--------99879999799999999999999988776 Q ss_pred HC Q ss_conf 11 Q gi|254780410|r 138 NW 139 (362) Q Consensus 138 ~w 139 (362) .| T Consensus 294 ~~ 295 (433) T 1u2z_A 294 KL 295 (433) T ss_dssp HH T ss_pred HH T ss_conf 66 No 70 >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A Probab=94.93 E-value=0.032 Score=33.74 Aligned_cols=66 Identities=15% Similarity=0.169 Sum_probs=44.5 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHH Q ss_conf 7671179999999999999998388876214100786468988879999741856430121023636978999998641 Q gi|254780410|r 52 APEISQIFGEMLAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQL 130 (362) Q Consensus 52 sp~is~~Fg~~ia~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l 130 (362) .|--|.+ |..+..-.+.+.....-.|+++|+|+|+.+..+.+.. | .-.++.||.||.+.+.-+++. T Consensus 53 ~p~rskl-----~a~i~~~l~~l~ikpg~~VLDlGcGtG~~~~~la~~~----~----~G~V~aVDiSp~mi~~a~~~a 118 (230) T 1fbn_A 53 NPNKSKL-----AAAIIKGLKVMPIKRDSKILYLGASAGTTPSHVADIA----D----KGIVYAIEYAPRIMRELLDAC 118 (230) T ss_dssp CTTTCHH-----HHHHHTTCCCCCCCTTCEEEEESCCSSHHHHHHHHHT----T----TSEEEEEESCHHHHHHHHHHT T ss_pred CCCCCHH-----HHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHC----C----CCEEEEEECCHHHHHHHHHHH T ss_conf 8972589-----9999855762687999999996797798999999758----9----965999979989999999877 No 71 >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1, methyltransferase domain, structural genomics; HET: MSE; 1.60A {Mesorhizobium loti MAFF303099} Probab=94.92 E-value=0.11 Score=30.08 Aligned_cols=83 Identities=17% Similarity=0.176 Sum_probs=44.6 Q ss_pred HHHHHCCCCCCCCCCCCCCCC-CCCEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHC Q ss_conf 998710898786468988888-8886457671179999999999999998388876214100786468988879999741 Q gi|254780410|r 25 FALCVADPEFGYYSTCNPFGA-VGDFVTAPEISQIFGEMLAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKL 103 (362) Q Consensus 25 M~~aLy~p~~GYY~~~~~~G~-~GDF~Tsp~is~~Fg~~ia~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~ 103 (362) |..-+|+ +-.||..-..... ...+-..++.+ . +.++ +..-+.-.|+|+|.|+|.++.-+.+. T Consensus 2 ~~~~~~~-~~~f~~~y~~~~~~~~~~~~~~~~~-~--------~~~~---~p~~~g~rVLDiGCG~G~~~~~l~~~---- 64 (243) T 3bkw_A 2 MAQNIYD-QPDFFAGYSQLGRSIEGLDGAAEWP-A--------LRAM---LPEVGGLRIVDLGCGFGWFCRWAHEH---- 64 (243) T ss_dssp ------------------------CGGGCTTHH-H--------HHHH---SCCCTTCEEEEETCTTCHHHHHHHHT---- T ss_pred CCCCCCC-CHHHHHHHHHHHHCCCCHHHHHHHH-H--------HHHH---CCCCCCCEEEEECCCCCHHHHHHHHC---- T ss_conf 9854368-8999999986231300365637799-9--------9985---79778899999788898999999975---- Q ss_pred CHHHHHCCCEEEEECCHHHHHHHHHH Q ss_conf 85643012102363697899999864 Q gi|254780410|r 104 KPDFFSVLSIYMVETSERLTLIQKKQ 129 (362) Q Consensus 104 ~p~~~~~l~~~ivE~s~~l~~~Q~~~ 129 (362) + ..+++.+|.|+.+.+.-+++ T Consensus 65 -~----~~~V~gvD~S~~~l~~a~~~ 85 (243) T 3bkw_A 65 -G----ASYVLGLDLSEKMLARARAA 85 (243) T ss_dssp -T----CSEEEEEESCHHHHHHHHHT T ss_pred -C----CCEEEEECCHHHHHHHHHHH T ss_conf -9----87899987579899999861 No 72 >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} Probab=94.86 E-value=0.13 Score=29.68 Aligned_cols=64 Identities=20% Similarity=0.188 Sum_probs=47.9 Q ss_pred HHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHH Q ss_conf 999999999999998388876214100786468988879999741856430121023636978999998641 Q gi|254780410|r 59 FGEMLAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQL 130 (362) Q Consensus 59 Fg~~ia~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l 130 (362) +-+.++..+.-++.....+.+..++++|.|.|+|++-+.+. .|. .++..||+++.+.+.-++.+ T Consensus 70 Y~r~m~~~~~~~~~~~~~~~p~rvL~lG~G~g~l~r~l~~~----~P~----~~v~~VEidp~vi~~ar~~f 133 (317) T 3gjy_A 70 YMRWIATGARAFIDAHQDASKLRITHLGGGACTMARYFADV----YPQ----SRNTVVELDAELARLSREWF 133 (317) T ss_dssp HHHHHHHHHHHHHHHHSCGGGCEEEEESCGGGHHHHHHHHH----STT----CEEEEEESCHHHHHHHHHHS T ss_pred HHHHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHHHHHHH----CCC----CEEEEEECCHHHHHHHHHHC T ss_conf 99999998875021246998877999899689999999997----899----86999979889999999867 No 73 >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics, protein structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} Probab=94.84 E-value=0.22 Score=27.98 Aligned_cols=65 Identities=9% Similarity=0.045 Sum_probs=45.3 Q ss_pred HHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHCC--CCHHCC Q ss_conf 9999983888762141007864689888799997418564301210236369789999986411102--310110 Q gi|254780410|r 68 ICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASYG--DKINWY 140 (362) Q Consensus 68 ~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~~--~~v~w~ 140 (362) -+++.+.=.|. -.|+|+|+|+|.++.-+++.+. | ..+++-+|.|+.+.+.-+++..+.+ .+|.++ T Consensus 13 ~~~l~~~ik~G-~~VLDlGcG~G~~t~~la~~~~---~----~~~V~giDis~~~l~~ar~~~~~~g~~~~v~~~ 79 (197) T 3eey_A 13 HDYIKMFVKEG-DTVVDATCGNGNDTAFLASLVG---E----NGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLI 79 (197) T ss_dssp HHHHHHHCCTT-CEEEESCCTTSHHHHHHHHHHC---T----TCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEE T ss_pred HHHHHHHCCCC-CEEEEEEEECCHHHHHHHHHHC---C----CEEEEEEECCHHHHHHHHHHHHHCCCCCCEEEE T ss_conf 99999858999-9999992048899999999838---9----819999973889989999999983998778999 No 74 >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} Probab=94.83 E-value=0.22 Score=27.99 Aligned_cols=55 Identities=16% Similarity=0.143 Sum_probs=38.1 Q ss_pred HHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHH Q ss_conf 999999998388876214100786468988879999741856430121023636978999998641 Q gi|254780410|r 65 IFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQL 130 (362) Q Consensus 65 ~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l 130 (362) ..+.+..+.. .|.+-+|+|+|.|+|.++.-+.+. -.+++-+|.|+.+.+.-+++. T Consensus 28 ~~~~~~~~~~-~~~~~~VLDiGcG~G~~~~~la~~----------g~~v~giD~S~~~l~~a~~~~ 82 (239) T 3bxo_A 28 SDIADLVRSR-TPEASSLLDVACGTGTHLEHFTKE----------FGDTAGLELSEDMLTHARKRL 82 (239) T ss_dssp HHHHHHHHHH-CTTCCEEEEETCTTSHHHHHHHHH----------HSEEEEEESCHHHHHHHHHHC T ss_pred HHHHHHHHHH-CCCCCEEEEEECCCCHHHHHHHHC----------CCEEEEEECCHHHHHHHHHCC T ss_conf 9999999974-899498999817584999999973----------996999969678878886336 No 75 >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genomics, JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Probab=94.83 E-value=0.043 Score=32.90 Aligned_cols=45 Identities=18% Similarity=0.203 Sum_probs=33.2 Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHH Q ss_conf 7621410078646898887999974185643012102363697899999864111 Q gi|254780410|r 78 SCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLAS 132 (362) Q Consensus 78 ~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~ 132 (362) .+-.|+|+|.|.|.++..+.+ . ..+++-+|.|+.+.+.-+++... T Consensus 52 ~~~~vLDiGcG~G~~~~~l~~----~------g~~v~gvD~S~~~i~~A~~~~~~ 96 (227) T 3e8s_A 52 QPERVLDLGCGEGWLLRALAD----R------GIEAVGVDGDRTLVDAARAAGAG 96 (227) T ss_dssp CCSEEEEETCTTCHHHHHHHT----T------TCEEEEEESCHHHHHHHHHTCSS T ss_pred CCCEEEEECCCCCHHHHHHHH----C------CCEEEEECCCHHHHHHHHHHCCC T ss_conf 959899976898399999997----6------99699986817889999986014 No 76 >1xva_A Glycine N-methyltransferase; HET: SAM; 2.20A {Escherichia coli} SCOP: c.66.1.5 PDB: 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* Probab=94.80 E-value=0.16 Score=29.04 Aligned_cols=85 Identities=21% Similarity=0.327 Sum_probs=50.8 Q ss_pred CCCCCC-CCCCCCC--CEEECCCCCHHHHH----------HHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHH Q ss_conf 864689-8888888--86457671179999----------9999999999983888762141007864689888799997 Q gi|254780410|r 35 GYYSTC-NPFGAVG--DFVTAPEISQIFGE----------MLAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVIC 101 (362) Q Consensus 35 GYY~~~-~~~G~~G--DF~Tsp~is~~Fg~----------~ia~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~ 101 (362) ++|.++ ...+.+| |.|+-.+...+.-. ....|+...+...+ .-.|+|+|+|+|.++..+.+. T Consensus 3 ~v~~~r~~~~~~~~~~d~y~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~vLDiGcG~G~~~~~la~~-- 77 (292) T 1xva_A 3 SVYRTRSLGVAAEGIPDQYADGEAARVWQLYIGDTRSRTAEYKAWLLGLLRQHG---CHRVLDVACGTGVDSIMLVEE-- 77 (292) T ss_dssp CCCCSSCTTCCCTTSCCTTTTSHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHTT---CCEEEESSCTTSHHHHHHHHT-- T ss_pred CEEEECCCCCCCCCCCHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCC---CCEEEEECCCCCHHHHHHHHC-- T ss_conf 358834457544586244306468889999725456678999999999641318---499999047884999999977-- Q ss_pred HCCHHHHHCCCEEEEECCHHHHHHHHHHHHH Q ss_conf 4185643012102363697899999864111 Q gi|254780410|r 102 KLKPDFFSVLSIYMVETSERLTLIQKKQLAS 132 (362) Q Consensus 102 ~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~ 132 (362) -.+++-++.|+.+.+.-+++... T Consensus 78 --------g~~v~gvD~s~~ml~~a~~~~~~ 100 (292) T 1xva_A 78 --------GFSVTSVDASDKMLKYALKERWN 100 (292) T ss_dssp --------TCEEEEEESCHHHHHHHHHHHHH T ss_pred --------CCEEEEEECCHHHHHHHHHHHHH T ss_conf --------99699998999999999999986 No 77 >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, PSI, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 Probab=94.78 E-value=0.09 Score=30.69 Aligned_cols=58 Identities=17% Similarity=0.282 Sum_probs=43.7 Q ss_pred HHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHC Q ss_conf 99998388876214100786468988879999741856430121023636978999998641110 Q gi|254780410|r 69 CAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASY 133 (362) Q Consensus 69 ~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~ 133 (362) .+...++....-.|+|+|.|+|.|+..+++.+. | .-+++-+|.++...+.-++++..+ T Consensus 90 ~Ii~~ldi~PG~~VLE~GtGsG~lT~~LAr~vg---p----~G~V~t~D~~~~~~~~Ar~n~~~~ 147 (280) T 1i9g_A 90 QIVHEGDIFPGARVLEAGAGSGALTLSLLRAVG---P----AGQVISYEQRADHAEHARRNVSGC 147 (280) T ss_dssp HHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHC---T----TSEEEEECSCHHHHHHHHHHHHHH T ss_pred HHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHC---C----CEEEEEEECCHHHHHHHHHHHHHH T ss_conf 999984999999899922761599999999749---9----859999958999999999855543 No 78 >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A Probab=94.78 E-value=0.099 Score=30.42 Aligned_cols=88 Identities=22% Similarity=0.238 Sum_probs=52.1 Q ss_pred HHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHCCC------CHHCC Q ss_conf 999999838887621410078646898887999974185643012102363697899999864111023------10110 Q gi|254780410|r 67 LICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASYGD------KINWY 140 (362) Q Consensus 67 ~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~~~------~v~w~ 140 (362) +.+.+... ..-.|+|+|.|.|.++.-+. +.. ...+++.++.|+...+.-++++..... .+.+. T Consensus 21 v~~~l~~~---~~~rVLDvGCG~G~~~~~La----~~~----~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~ 89 (219) T 3jwg_A 21 VVAVLKSV---NAKKVIDLGCGEGNLLSLLL----KDK----SFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLF 89 (219) T ss_dssp HHHHHHHT---TCCEEEEETCTTCHHHHHHH----TST----TCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEE T ss_pred HHHHCCCC---CCCEEEEEECCCCHHHHHHH----HHC----CCCEEEECCCCHHHHHHHHHHHHHCCCCHHHCCCCCCC T ss_conf 99964112---84989998187899999999----838----97456322599999999999865504412320010001 Q ss_pred -CCHHHC---CCCCEEEEEECCCCCCCEE Q ss_conf -434444---5695699981228875235 Q gi|254780410|r 141 -TSLADV---PLGFTFLVANEFFDSLPIK 165 (362) Q Consensus 141 -~~l~~~---~~~~~iiiaNE~lDAlPv~ 165 (362) .+..+. .....+|++.+++.-+|-. T Consensus 90 ~~~~~~~~~~~~~fD~i~~~~vl~hl~~~ 118 (219) T 3jwg_A 90 QSSLVYRDKRFSGYDAATVIEVIEHLDEN 118 (219) T ss_dssp ECCSSSCCGGGTTCSEEEEESCGGGCCHH T ss_pred CCCHHHCCHHCCCCCEEHHHHHHHHCCHH T ss_conf 14533250003655456275569718958 No 79 >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus HB27} Probab=94.78 E-value=0.1 Score=30.36 Aligned_cols=58 Identities=14% Similarity=0.158 Sum_probs=43.1 Q ss_pred HHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHCC Q ss_conf 99983888762141007864689888799997418564301210236369789999986411102 Q gi|254780410|r 70 AWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASYG 134 (362) Q Consensus 70 ~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~~ 134 (362) +...++....-.|+|+|.|+|.++.-+.+.+.. .-.++-+|.++.+.+.-++++..+. T Consensus 88 Ii~~l~i~pG~~VLEiG~GsG~lt~~lA~~v~~-------~g~V~~~d~~~~~~~~A~~n~~~~~ 145 (258) T 2pwy_A 88 MVTLLDLAPGMRVLEAGTGSGGLTLFLARAVGE-------KGLVESYEARPHHLAQAERNVRAFW 145 (258) T ss_dssp HHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCT-------TSEEEEEESCHHHHHHHHHHHHHHC T ss_pred HHHHCCCCCCCEEEECCCCHHHHHHHHHHHCCC-------CCEEEEEECCHHHHHHHHHHHHHCC T ss_conf 999719899999998777067999999997288-------7389998489999999999999808 No 80 >3ndi_A Methyltransferase; S-adenosylmethionine, kijanose, tetronitrose, tetradeoxysuga micromonospora chalcea, TCAB9, SUGA methylation; HET: SAM TMP; 1.50A {Micromonospora chalcea} PDB: 3ndj_A* Probab=94.74 E-value=0.2 Score=28.34 Aligned_cols=229 Identities=14% Similarity=0.030 Sum_probs=101.6 Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHCC Q ss_conf 11799999999999999983888762141007864689888799997418564301210236369789999986411102 Q gi|254780410|r 55 ISQIFGEMLAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASYG 134 (362) Q Consensus 55 is~~Fg~~ia~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~~ 134 (362) .|+.+-+-+......++.......+-.|+|+|+|+|.|+. .+++.. .+.+=+|+|+...+..++.--..- T Consensus 84 ~s~~~~~~~~~~~~~l~~~~~~~~~~~ileIG~~dG~lL~----~~~~~~------~~~~Gidps~~~~~~~~~~~~~~~ 153 (416) T 3ndi_A 84 GSSVMREHFAMLARDFLATELTGPDPFIVEIGCNDGIMLR----TIQEAG------VRHLGFEPSSGVAAKAREKGIRVR 153 (416) T ss_dssp GCHHHHHHHHHHHHHHHHTTTCSSSCEEEEETCTTTTTHH----HHHHTT------CEEEEECSCHHHHHHHHHTTCCEE T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHH----HHHHCC------CCEEEECCCCCHHHHHCCCCCCEE T ss_conf 9889999999999999987434778779983588870544----334203------532442256203444303556368 Q ss_pred CCHHCCCCHHHC---CCCCEEEEEECCCCCCCEEEEEEECCCCEEEEEEEEECCCEEECCCCCCCCCCCCCCCCCCCCCE Q ss_conf 310110434444---56956999812288752358999156646899899607953522576434322346331656841 Q gi|254780410|r 135 DKINWYTSLADV---PLGFTFLVANEFFDSLPIKQFVMTEHGIRERMIDIDQHDSLVFNIGDHEIKSNFLTCSDYFLGAI 211 (362) Q Consensus 135 ~~v~w~~~l~~~---~~~~~iiiaNE~lDAlPv~~~~~~~~~w~E~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 211 (362) ......+...++ ...+.+|+++-+|.-+|=-.- -+..+.-.+++++.+.+....................-. T Consensus 154 ~~~~~~~~~~~~~~~~~k~D~I~~~~vleHi~dp~~-----fl~~i~~~L~~~G~~~ievp~~~~~~~~~~~~~i~~eH~ 228 (416) T 3ndi_A 154 TDFFEKATADDVRRTEGPANVIYAANTLCHIPYVQS-----VLEGVDALLAPDGVFVFEDPYLGDIVAKTSFDQIYDEHF 228 (416) T ss_dssp CSCCSHHHHHHHHHHHCCEEEEEEESCGGGCSCHHH-----HHHHHHHHEEEEEEEEEEEECHHHHHHHTCGGGCSTTCC T ss_pred EECCHHHHHHHHHHCCCCCCEEEEEEEHHCCCCHHH-----HHHHHHHHHCCCCEEEEEECCCHHHCCCCCCCEEECCCC T ss_conf 404205667888851587518877500531502899-----999999874668769998165032112467661555744 Q ss_pred ECCCHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCEEEEECCCCCCCCC-----------CCCCCCCCCCCCCHHH Q ss_conf 12793478999999997620570599962433685888807764057676700-----------0100034531268899 Q gi|254780410|r 212 FENSPCRDREMQSISDRLACDGGTAIVIDYGYLQSRVGDTLQAVKGHTYVSPL-----------VNPGQADLSSHVDFQR 280 (362) Q Consensus 212 ~E~~~~~~~~~~~i~~~l~~~~G~~L~iDYGy~~~r~~gTLr~y~~H~~~dpl-----------~~pG~~DITahVnFs~ 280 (362) .=++ ..++.+.+.+. | +-++|...... .+|+++.+..++....- ...+..+.....+|.. T Consensus 229 ~yfs------~~sl~~ll~~~-g-~~i~~~~~~~~-~~gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (416) T 3ndi_A 229 FLFS------ATSVQGMAQRC-G-FELVDVQRLPV-HGGEVRYTLARQGSRTPSAAVAQLLAAEREQELSDMATLRAFAG 299 (416) T ss_dssp EECC------HHHHHHHHHHT-T-EEEEEEEEECG-GGSEEEEEEEETTSSCCCHHHHHHHHHHHHTTTTCHHHHHHHHH T ss_pred EECC------HHHHHHHHHHC-C-CEEEEEEEEEC-CCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHH T ss_conf 3676------78999999865-9-67999886411-68525336765177655421110357788764011356678999 Q ss_pred HHHH-----------HHHCCCEEEC--CEEHHHHHHH-CCH Q ss_conf 9999-----------9968983633--2338999997-897 Q gi|254780410|r 281 LSSI-----------AILYKLYING--LTTQGKFLEG-LGI 307 (362) Q Consensus 281 L~~~-----------a~~~g~~~~g--~~sQ~~FL~~-~GI 307 (362) -.+. ..+.+-.+.+ -.+.+..|++ +|+ T Consensus 300 ~~~~~~~~~~~~l~~~~~~~~~i~~~GA~~~~~~ll~~~~l 340 (416) T 3ndi_A 300 NVVKIRDELTALLHRLRAEGRSVVGYGATAKSATVTNFCGI 340 (416) T ss_dssp HHHHHHHHHHHHHHHHHHTTCCEEEECCCSHHHHHHHHHTC T ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCC T ss_conf 99999999999999999749915897045178999998188 No 81 >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Probab=94.72 E-value=0.082 Score=30.98 Aligned_cols=45 Identities=13% Similarity=0.180 Sum_probs=33.7 Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHH Q ss_conf 8762141007864689888799997418564301210236369789999986411 Q gi|254780410|r 77 PSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLA 131 (362) Q Consensus 77 p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~ 131 (362) |..-.|+|+|.|+|.++.-+.+. ..+++-+|.|+.+.+..+++.+ T Consensus 45 ~~~~~vLDlGCG~G~~~~~l~~~----------~~~v~giD~s~~~i~~a~~~~~ 89 (195) T 3cgg_A 45 PRGAKILDAGCGQGRIGGYLSKQ----------GHDVLGTDLDPILIDYAKQDFP 89 (195) T ss_dssp CTTCEEEEETCTTTHHHHHHHHT----------TCEEEEEESCHHHHHHHHHHCT T ss_pred CCCCEEEEECCCCCHHHHHHHHC----------CCEEEEEECCHHHHHHHHHHCC T ss_conf 99998999768885999999976----------9989999797277899997302 No 82 >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 Probab=94.70 E-value=0.13 Score=29.51 Aligned_cols=61 Identities=11% Similarity=0.205 Sum_probs=40.5 Q ss_pred HHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHH Q ss_conf 999999999983888762141007864689888799997418564301210236369789999986411 Q gi|254780410|r 63 LAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLA 131 (362) Q Consensus 63 ia~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~ 131 (362) +...+...+.+.-...+-.|+|+|.|+|.++..+.+. .|+ .+++-+|+|+...+.-+++.+ T Consensus 70 ~~~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~----~~~----~~~~gvD~s~~~l~~a~~~~~ 130 (269) T 1p91_A 70 LRDAIVAQLRERLDDKATAVLDIGCGEGYYTHAFADA----LPE----ITTFGLDVSKVAIKAAAKRYP 130 (269) T ss_dssp HHHHHHHHHHHHSCTTCCEEEEETCTTSTTHHHHHHT----CTT----SEEEEEESCHHHHHHHHHHCT T ss_pred HHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHH----CCC----CEEEEEECCHHHHHHHHHCCC T ss_conf 9999999998547888996999689896999999986----899----689999795889999985177 No 83 >3ege_A Putative methyltransferase from antibiotic biosynthesis pathway; YP_324569.1, structural genomics; 2.40A {Anabaena variabilis atcc 29413} Probab=94.61 E-value=0.042 Score=32.97 Aligned_cols=80 Identities=14% Similarity=0.213 Sum_probs=48.8 Q ss_pred HHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHCCCCHHCCC-CHHHCC Q ss_conf 9999838887621410078646898887999974185643012102363697899999864111023101104-344445 Q gi|254780410|r 69 CAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASYGDKINWYT-SLADVP 147 (362) Q Consensus 69 ~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~~~~v~w~~-~l~~~~ 147 (362) .+++.++.+..-.|+|+|+|+|.++..+.+. ..+++-||+|+.+.+..+. ..++.|+. +..++| T Consensus 25 ~~~~~l~l~~~~~vLDvGcG~G~~~~~l~~~----------~~~v~gvD~s~~~~~~a~~-----~~~~~~~~~d~~~l~ 89 (261) T 3ege_A 25 AIINLLNLPKGSVIADIGAGTGGYSVALANQ----------GLFVYAVEPSIVMRQQAVV-----HPQVEWFTGYAENLA 89 (261) T ss_dssp HHHHHHCCCTTCEEEEETCTTSHHHHHHHTT----------TCEEEEECSCHHHHHSSCC-----CTTEEEECCCTTSCC T ss_pred HHHHHCCCCCCCEEEEECCCCCHHHHHHHHC----------CCEEEEEECCCCCCCCCCC-----CCCHHHHHHHHHHCC T ss_conf 9999659999699999648888999999976----------9989999744531210001-----221013334454302 Q ss_pred --CC-CEEEEEECCCCCCC Q ss_conf --69-56999812288752 Q gi|254780410|r 148 --LG-FTFLVANEFFDSLP 163 (362) Q Consensus 148 --~~-~~iiiaNE~lDAlP 163 (362) ++ ..+|+++..+--+| T Consensus 90 ~~~~~fD~v~~~~~l~~~~ 108 (261) T 3ege_A 90 LPDKSVDGVISILAIHHFS 108 (261) T ss_dssp SCTTCBSEEEEESCGGGCS T ss_pred CCCCCCCEEEECCHHHHCC T ss_conf 5676013775401277468 No 84 >3id6_C Fibrillarin-like rRNA/TRNA 2'-O- methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, RNA-binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} PDB: 3id5_B* Probab=94.59 E-value=0.048 Score=32.54 Aligned_cols=67 Identities=15% Similarity=0.067 Sum_probs=44.8 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHH Q ss_conf 7671179999999999999998388876214100786468988879999741856430121023636978999998641 Q gi|254780410|r 52 APEISQIFGEMLAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQL 130 (362) Q Consensus 52 sp~is~~Fg~~ia~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l 130 (362) .|--|.+= ..+..-.+.+.....-.|+|+|+|+|+.+..+.+.+. ..-.++.||.|+...+.-+++. T Consensus 55 ~p~rSkla-----aai~~gl~~~~lkpG~~VLdLG~G~G~~~~~la~~Vg-------~~G~V~aVD~s~~~l~~a~~~a 121 (232) T 3id6_C 55 NAFRSKLA-----GAILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIE-------LNGKAYGVEFSPRVVRELLLVA 121 (232) T ss_dssp CTTTCHHH-----HHHHTTCSCCSCCTTCEEEEETCTTSHHHHHHHHHHT-------TTSEEEEEECCHHHHHHHHHHH T ss_pred CCCCCHHH-----HHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHC-------CCCEEEEEECCHHHHHHHHHHH T ss_conf 87502899-----9998433305889999999967718899999999715-------6876999979999999999765 No 85 >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Probab=94.58 E-value=0.081 Score=31.01 Aligned_cols=43 Identities=16% Similarity=0.229 Sum_probs=32.0 Q ss_pred CCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHH Q ss_conf 62141007864689888799997418564301210236369789999986411 Q gi|254780410|r 79 CVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLA 131 (362) Q Consensus 79 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~ 131 (362) +-.|+|+|+|+|.++..+++. ..+++-+|.|+...+.-++++. T Consensus 18 ~~~VLDiGcG~G~~~~~l~~~----------~~~v~gvD~s~~~i~~a~~~~~ 60 (170) T 3i9f_A 18 KGVIVDYGCGNGFYCKYLLEF----------ATKLYCIDINVIALKEVKEKFD 60 (170) T ss_dssp CEEEEEETCTTCTTHHHHHTT----------EEEEEEECSCHHHHHHHHHHCT T ss_pred CCEEEEEECCCCHHHHHHHHC----------CCEEEEEECCCCCCCEECCCCE T ss_conf 697999808997999999962----------9989999456420100012210 No 86 >1r18_A Protein-L-isoaspartate(D-aspartate)-O- methyltransferase; isomerization, protein repair, S- adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 Probab=94.52 E-value=0.14 Score=29.34 Aligned_cols=113 Identities=19% Similarity=0.266 Sum_probs=61.4 Q ss_pred HHHHHHHHCCCCCHHHHHHH------HHCCCCCCCCCC-CCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCC Q ss_conf 99999981898049999998------710898786468-98888888864576711799999999999999983888762 Q gi|254780410|r 8 KIVNLIKKNGQMTVDQYFAL------CVADPEFGYYST-CNPFGAVGDFVTAPEISQIFGEMLAIFLICAWEQHGFPSCV 80 (362) Q Consensus 8 ~i~~~I~~~G~i~f~~fM~~------aLy~p~~GYY~~-~~~~G~~GDF~Tsp~is~~Fg~~ia~~~~~~~~~~~~p~~~ 80 (362) .+.+.++..|-|.=.+-.+. ..|=|+. -|.- .-++|. |-++.+|.+. |+ +.+.+.. .....- T Consensus 18 ~mV~~l~~~g~i~d~~v~~a~~~vpRe~Fvp~~-aY~D~~lpi~~-~~~is~P~~~-------a~-~l~~L~~-~l~pg~ 86 (227) T 1r18_A 18 DLIRQLKDHGVIASDAVAQAMKETDRKHYSPRN-PYMDAPQPIGG-GVTISAPHMH-------AF-ALEYLRD-HLKPGA 86 (227) T ss_dssp HHHHHHHHTTSCCCHHHHHHHHTSCGGGTCSSC-TTBSSCEEEET-TEEECCHHHH-------HH-HHHHTTT-TCCTTC T ss_pred HHHHHHHHCCCCCCHHHHHHHHHCCHHHCCCCC-CCCCCCCCCCC-CCEECCHHHH-------HH-HHHHHHH-HCCCCC T ss_conf 999999984998999999999829998869732-27888856899-9886336999-------99-9997675-389998 Q ss_pred EEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHC Q ss_conf 14100786468988879999741856430121023636978999998641110 Q gi|254780410|r 81 RLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASY 133 (362) Q Consensus 81 ~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~ 133 (362) .|+|+|+|+|.++.=+.+.+.... .....+++-||.++.+.+.-++++... T Consensus 87 ~VLeIG~GtGy~ta~la~l~g~~g--~~~~~~V~~iE~~~~l~~~A~~~l~~~ 137 (227) T 1r18_A 87 RILDVGSGSGYLTACFYRYIKAKG--VDADTRIVGIEHQAELVRRSKANLNTD 137 (227) T ss_dssp EEEEESCTTSHHHHHHHHHHHHSC--CCTTCEEEEEESCHHHHHHHHHHHHHH T ss_pred EEEEECCCCCHHHHHHHHHHHHCC--CCCCCEEEEEECCHHHHHHHHHHHHHC T ss_conf 899957997799999999853315--777668999947899999999999760 No 87 >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* Probab=94.51 E-value=0.27 Score=27.45 Aligned_cols=60 Identities=17% Similarity=0.133 Sum_probs=39.1 Q ss_pred HHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHH Q ss_conf 999999999838887621410078646898887999974185643012102363697899999864111 Q gi|254780410|r 64 AIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLAS 132 (362) Q Consensus 64 a~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~ 132 (362) -.|+-+.+.+...+..-.|+|+|.|+|..+.-+.+. ...+++-|++|+...+.-+++... T Consensus 50 ~n~vK~~Li~~~~~~~~~VLDlGCG~G~~~~~~~~~---------~~~~v~GiD~S~~~l~~a~~r~~~ 109 (298) T 1ri5_A 50 NNFIKACLIRLYTKRGDSVLDLGCGKGGDLLKYERA---------GIGEYYGVDIAEVSINDARVRARN 109 (298) T ss_dssp HHHHHHHHHHHHCCTTCEEEEETCTTTTTHHHHHHH---------TCSEEEEEESCHHHHHHHHHHHHT T ss_pred HHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHC---------CCCEEEEECCCHHHHHHHHHHHHH T ss_conf 589999999984899598999637087899999966---------998588758999999999999875 No 88 >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research center for structural genomics, protein structure initiative, PSI-2; 2.20A {Pyrococcus furiosus} Probab=94.49 E-value=0.17 Score=28.88 Aligned_cols=75 Identities=12% Similarity=0.105 Sum_probs=45.9 Q ss_pred CCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHCCCC--HHCCC--CHHHCC-C Q ss_conf 388876214100786468988879999741856430121023636978999998641110231--01104--344445-6 Q gi|254780410|r 74 HGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASYGDK--INWYT--SLADVP-L 148 (362) Q Consensus 74 ~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~~~~--v~w~~--~l~~~~-~ 148 (362) ......-.|+|+|.|+|.++.-+.... | ..+++.+|.|+...+.-++++...+.. +.-.+ .+...+ . T Consensus 51 ~~~~~~~~vLDig~G~G~~~~~~a~~~----~----~~~v~~vDi~~~~~~~a~~n~~~~~~~~~i~~~~~~~~~~~~~~ 122 (230) T 3evz_A 51 TFLRGGEVALEIGTGHTAMMALMAEKF----F----NCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGVVEG 122 (230) T ss_dssp TTCCSSCEEEEECCTTTCHHHHHHHHH----H----CCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTTTCCS T ss_pred HCCCCCCEEEEEECCHHHHHHHHHHHC----C----CCEEEEEECCCCHHHHHHHHHHHCCCCCEEEEEECCCHHHCCCC T ss_conf 457898989994074439999999977----9----98799998863112467766886066517998521101213576 Q ss_pred CCEEEEEE Q ss_conf 95699981 Q gi|254780410|r 149 GFTFLVAN 156 (362) Q Consensus 149 ~~~iiiaN 156 (362) ...+|+|| T Consensus 123 ~fD~Iv~N 130 (230) T 3evz_A 123 TFDVIFSA 130 (230) T ss_dssp CEEEEEEC T ss_pred CCCEEEEC T ss_conf 52489989 No 89 >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* Probab=94.46 E-value=0.13 Score=29.65 Aligned_cols=57 Identities=18% Similarity=0.241 Sum_probs=39.2 Q ss_pred CCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHCC--CCHHCC Q ss_conf 3888762141007864689888799997418564301210236369789999986411102--310110 Q gi|254780410|r 74 HGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASYG--DKINWY 140 (362) Q Consensus 74 ~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~~--~~v~w~ 140 (362) +.-...-.|+|+|+|+|.++.-+++ . .-+.+.||.|+...+.-++++..++ +++.++ T Consensus 29 l~~~~g~~VLDiGcG~G~~s~~la~----~------~~~V~avD~~~~~~~~a~~~~~~~gl~~~v~~~ 87 (192) T 1l3i_A 29 AEPGKNDVAVDVGCGTGGVTLELAG----R------VRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLM 87 (192) T ss_dssp HCCCTTCEEEEESCTTSHHHHHHHT----T------SSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEE T ss_pred CCCCCCCEEEEEECCHHHHHHHHHH----C------CCEEEEEECCCHHHHHHHHHHHHCCCCCCEEEE T ss_conf 6999979999983870499999984----3------999999990628899999999980999888999 No 90 >2pbf_A Protein-L-isoaspartate O-methyltransferase beta- aspartate methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum 3D7} Probab=94.44 E-value=0.039 Score=33.20 Aligned_cols=92 Identities=17% Similarity=0.156 Sum_probs=52.7 Q ss_pred HCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHH Q ss_conf 10898786468988888888645767117999999999999999838887621410078646898887999974185643 Q gi|254780410|r 29 VADPEFGYYSTCNPFGAVGDFVTAPEISQIFGEMLAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFF 108 (362) Q Consensus 29 Ly~p~~GYY~~~~~~G~~GDF~Tsp~is~~Fg~~ia~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~ 108 (362) .|=|+.=|--..-++|. |-++.+|.+. |..+..+..++ .| .-.|+|+|+|+|.++.=+........ . T Consensus 41 ~Fv~~~aY~D~~l~i~~-~~tis~P~~~-------A~~l~~L~~~l-~~-g~~VLeIGtGsGY~ta~la~~~~~l~---~ 107 (227) T 2pbf_A 41 KYIKEIPYIDTPVYISH-GVTISAPHMH-------ALSLKRLINVL-KP-GSRAIDVGSGSGYLTVCMAIKMNVLE---N 107 (227) T ss_dssp GTCSSSTTSSSCEEEET-TEEECCHHHH-------HHHHHHHTTTS-CT-TCEEEEESCTTSHHHHHHHHHTTTTT---C T ss_pred HCCCHHCCCCCCCCCCC-CCEECHHHHH-------HHHHHHHHHHC-CC-CCEEEEECCCCCHHHHHHHHHHHHHC---C T ss_conf 76940128998835789-9785578999-------99999878647-99-88699837997399999999976522---4 Q ss_pred HCCCEEEEECCHHHHHHHHHHHHHC Q ss_conf 0121023636978999998641110 Q gi|254780410|r 109 SVLSIYMVETSERLTLIQKKQLASY 133 (362) Q Consensus 109 ~~l~~~ivE~s~~l~~~Q~~~l~~~ 133 (362) ..-..+-||.++.|.+.-++++... T Consensus 108 ~~g~V~~iE~~~~l~~~a~~~l~~~ 132 (227) T 2pbf_A 108 KNSYVIGLERVKDLVNFSLENIKRD 132 (227) T ss_dssp TTCEEEEEESCHHHHHHHHHHHHHH T ss_pred CCCEEEEEEECHHHHHHHHHHHHHC T ss_conf 5653899970599999999999851 No 91 >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} SCOP: c.66.1.16 PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* Probab=94.41 E-value=0.058 Score=32.00 Aligned_cols=53 Identities=13% Similarity=0.125 Sum_probs=37.4 Q ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHCCCCH Q ss_conf 88762141007864689888799997418564301210236369789999986411102310 Q gi|254780410|r 76 FPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASYGDKI 137 (362) Q Consensus 76 ~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~~~~v 137 (362) .+..-.|+|+|.|.|.++.-+++ ..| -+++.||.||.+.+.-+++......++ T Consensus 58 ~~~g~rVLeiG~G~G~~a~~la~----~~~-----~~vt~id~s~~~l~~a~~~~~~~~~~~ 110 (236) T 1zx0_A 58 SSKGGRVLEVGFGMAIAASKVQE----API-----DEHWIIECNDGVFQRLRDWAPRQTHKV 110 (236) T ss_dssp TTTCEEEEEECCTTSHHHHHHHT----SCE-----EEEEEEECCHHHHHHHHHHGGGCSSEE T ss_pred CCCCCEEEEECCCCCHHHHHHHH----CCC-----CEEEEEECCHHHHHHHHHHHHHCCCCC T ss_conf 44898499988885099999997----299-----779998089899999999887558862 No 92 >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} Probab=94.37 E-value=0.046 Score=32.70 Aligned_cols=69 Identities=17% Similarity=0.169 Sum_probs=46.0 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHH Q ss_conf 76711799999999999999983888762141007864689888799997418564301210236369789999986411 Q gi|254780410|r 52 APEISQIFGEMLAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLA 131 (362) Q Consensus 52 sp~is~~Fg~~ia~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~ 131 (362) .|--|.+= ..+..-.+.++....-.|+++|+|+|+.+..+.+.+. | .-+++.||.|+.+.+.-+++.. T Consensus 56 ~p~rskla-----aai~~~l~~l~lkpG~~VLDlG~G~G~~~~~la~~vg---~----~G~V~aVD~s~~~l~~a~~~a~ 123 (233) T 2ipx_A 56 NPFRSKLA-----AAILGGVDQIHIKPGAKVLYLGAASGTTVSHVSDIVG---P----DGLVYAVEFSHRSGRDLINLAK 123 (233) T ss_dssp CTTTCHHH-----HHHHTTCSCCCCCTTCEEEEECCTTSHHHHHHHHHHC---T----TCEEEEECCCHHHHHHHHHHHH T ss_pred CCCCCHHH-----HHHHHCHHHCCCCCCCEEEEECCCCCHHHHHHHHHHC---C----CCEEEEEECCHHHHHHHHHHHH T ss_conf 78612999-----9998455525999999999965768989999999859---9----9679999799999999999755 Q ss_pred H Q ss_conf 1 Q gi|254780410|r 132 S 132 (362) Q Consensus 132 ~ 132 (362) . T Consensus 124 ~ 124 (233) T 2ipx_A 124 K 124 (233) T ss_dssp H T ss_pred H T ss_conf 1 No 93 >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Probab=94.35 E-value=0.12 Score=29.95 Aligned_cols=46 Identities=22% Similarity=0.369 Sum_probs=33.6 Q ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHH Q ss_conf 88762141007864689888799997418564301210236369789999986411 Q gi|254780410|r 76 FPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLA 131 (362) Q Consensus 76 ~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~ 131 (362) .|..-.|+|+|+|+|.++..++. . -.+++-||.|+.+.+.-++++. T Consensus 41 l~~~~~VLDvGCG~G~~~~~l~~----~------g~~v~gvD~s~~~i~~a~~~~~ 86 (211) T 3e23_A 41 LPAGAKILELGCGAGYQAEAMLA----A------GFDVDATDGSPELAAEASRRLG 86 (211) T ss_dssp SCTTCEEEESSCTTSHHHHHHHH----T------TCEEEEEESCHHHHHHHHHHHT T ss_pred CCCCCEEEEECCCCCHHHHHHHH----C------CCCEEEEECCHHHHHHHHHHCC T ss_conf 89989899986888699999997----5------9923234146999999998608 No 94 >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} Probab=94.32 E-value=0.13 Score=29.69 Aligned_cols=54 Identities=15% Similarity=0.090 Sum_probs=36.4 Q ss_pred HHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHC Q ss_conf 99998388876214100786468988879999741856430121023636978999998641110 Q gi|254780410|r 69 CAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASY 133 (362) Q Consensus 69 ~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~ 133 (362) ..+.....| +-.|+|+|.|+|..+.-+. +. -.+++-++.|+...+..+++.... T Consensus 58 ~~~~~~~~~-~~rVLdlGCG~G~~~~~la----~~------g~~V~giD~S~~ai~~a~~~~~~~ 111 (235) T 3lcc_A 58 HLVDTSSLP-LGRALVPGCGGGHDVVAMA----SP------ERFVVGLDISESALAKANETYGSS 111 (235) T ss_dssp HHHHTTCSC-CEEEEEETCTTCHHHHHHC----BT------TEEEEEECSCHHHHHHHHHHHTTS T ss_pred HHHHHCCCC-CCCEEEECCCCCHHHHHHH----HC------CCEEEEEECCHHHHHHHHHHHHHC T ss_conf 999857999-9948994388878999998----66------987999746699999999987641 No 95 >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} Probab=94.30 E-value=0.12 Score=29.76 Aligned_cols=65 Identities=15% Similarity=0.123 Sum_probs=42.2 Q ss_pred EEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHH Q ss_conf 64576711799999999999999983888762141007864689888799997418564301210236369789999986 Q gi|254780410|r 49 FVTAPEISQIFGEMLAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKK 128 (362) Q Consensus 49 F~Tsp~is~~Fg~~ia~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~ 128 (362) ..|-|+--..|...+ .. ..|..-.|+|+|.|+|.++..+.+. -.+++-++.|+.+.+.-++ T Consensus 28 ~~~~~~~~~~~~~~l----~~-----~l~pg~rVLDvGCGtG~~a~~La~~----------g~~V~giD~S~~mi~~Ar~ 88 (226) T 3m33_A 28 VLSGPDPELTFDLWL----SR-----LLTPQTRVLEAGCGHGPDAARFGPQ----------AARWAAYDFSPELLKLARA 88 (226) T ss_dssp EESSSCTTHHHHHHH----HH-----HCCTTCEEEEESCTTSHHHHHHGGG----------SSEEEEEESCHHHHHHHHH T ss_pred HCCCCCHHHHHHHHH----HH-----HCCCCCEEEEECCCCCHHHHHHHCC----------CCEEEECCCCHHHHHHHHH T ss_conf 505988679999999----95-----1899997999884658645777516----------8689965799999999998 Q ss_pred HHHH Q ss_conf 4111 Q gi|254780410|r 129 QLAS 132 (362) Q Consensus 129 ~l~~ 132 (362) +.++ T Consensus 89 ~~~~ 92 (226) T 3m33_A 89 NAPH 92 (226) T ss_dssp HCTT T ss_pred HCCC T ss_conf 5899 No 96 >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} Probab=94.26 E-value=0.067 Score=31.58 Aligned_cols=77 Identities=10% Similarity=0.141 Sum_probs=48.2 Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHCCCCHHCC--CCHHHCCCC-CEEEE Q ss_conf 762141007864689888799997418564301210236369789999986411102310110--434444569-56999 Q gi|254780410|r 78 SCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASYGDKINWY--TSLADVPLG-FTFLV 154 (362) Q Consensus 78 ~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~~~~v~w~--~~l~~~~~~-~~iii 154 (362) .+-.|+|+|.|.|.++..+++. .|+ .+++-++.|+.+.+.-++++...+..+.+. ......+.+ ..+|+ T Consensus 49 ~~~~VLDiGCG~G~~~~~la~~----~p~----~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~ 120 (200) T 3fzg_A 49 HVSSILDFGCGFNPLALYQWNE----NEK----IIYHAYDIDRAEIAFLSSIIGKLKTTIKYRFLNKESDVYKGTYDVVF 120 (200) T ss_dssp CCSEEEEETCTTHHHHHHHHCS----SCC----CEEEEECSCHHHHHHHHHHHHHSCCSSEEEEECCHHHHTTSEEEEEE T ss_pred CCCEEEEECCCCCHHHHHHHHH----CCC----CEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECHHHHCCCCCCCEEE T ss_conf 9987999588678779999987----899----78999859999999998510232885156651013334478969898 Q ss_pred EECCCCCC Q ss_conf 81228875 Q gi|254780410|r 155 ANEFFDSL 162 (362) Q Consensus 155 aNE~lDAl 162 (362) ++.++--+ T Consensus 121 ~~~~l~~~ 128 (200) T 3fzg_A 121 LLKMLPVL 128 (200) T ss_dssp EETCHHHH T ss_pred ECCCHHCC T ss_conf 73833237 No 97 >3b3f_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase, catalytic domain, alternative splicing, chromatin regulator; HET: SAH; 2.20A {Rattus norvegicus} PDB: 3b3g_A 2v74_B* 2v7e_A Probab=94.20 E-value=0.21 Score=28.22 Aligned_cols=75 Identities=20% Similarity=0.260 Sum_probs=46.4 Q ss_pred CCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHH--CCCCHHCCC-CHHHC--CCCCEEE Q ss_conf 621410078646898887999974185643012102363697899999864111--023101104-34444--5695699 Q gi|254780410|r 79 CVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLAS--YGDKINWYT-SLADV--PLGFTFL 153 (362) Q Consensus 79 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~--~~~~v~w~~-~l~~~--~~~~~ii 153 (362) .-.|+|+|+|+|.|+.-..+ . ..-..+.+|.|+.. +..++.+.. +.++|.++. +..++ |....+| T Consensus 47 ~~~VLDiGcG~G~ls~~aa~----~-----Ga~~V~~~e~s~~~-~~~~~~~~~n~~~~~I~~i~~~~~~l~l~~~~Dvi 116 (341) T 3b3f_A 47 DKIVLDVGCGSGILSFFAAQ----A-----GARKIYAVEASTMA-QHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQVDII 116 (341) T ss_dssp TCEEEEESCTTSHHHHHHHH----T-----TCSEEEEEECSTHH-HHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEEEE T ss_pred CCEEEEECCCCCHHHHHHHH----C-----CCCEEEEEECCHHH-HHHHHHHHHCCCCCCCEEEEEEHHHCCCCCCCCEE T ss_conf 79899966685399999997----6-----99989999790999-99999999859986400796036652567663379 Q ss_pred EEECCCCCCCE Q ss_conf 98122887523 Q gi|254780410|r 154 VANEFFDSLPI 164 (362) Q Consensus 154 iaNE~lDAlPv 164 (362) +| |+++++.. T Consensus 117 vs-e~~~~~l~ 126 (341) T 3b3f_A 117 IS-EPMGYMLF 126 (341) T ss_dssp EC-CCCBTTBT T ss_pred EE-ECCCCCCC T ss_conf 87-50111244 No 98 >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} Probab=94.12 E-value=0.12 Score=29.87 Aligned_cols=71 Identities=24% Similarity=0.292 Sum_probs=46.2 Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHC--CCCHHCCC-CHHHCC----C-C Q ss_conf 76214100786468988879999741856430121023636978999998641110--23101104-344445----6-9 Q gi|254780410|r 78 SCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASY--GDKINWYT-SLADVP----L-G 149 (362) Q Consensus 78 ~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~--~~~v~w~~-~l~~~~----~-~ 149 (362) ++..|+|+|+|+|.++.-+. +. + ..+++.||.++...+.-++++... .++|.++. ++.+++ . . T Consensus 49 ~~~~vLDlG~G~G~~~l~la----~~-~----~~~v~~vDi~~~~~~~A~~N~~~n~l~~~v~~~~~D~~~~~~~~~~~~ 119 (259) T 3lpm_A 49 RKGKIIDLCSGNGIIPLLLS----TR-T----KAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKER 119 (259) T ss_dssp SCCEEEETTCTTTHHHHHHH----TT-C----CCEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTC T ss_pred CCCEEEEEECCCCHHHHHHH----HC-C----CCEEEEEECCHHHHHHHHHHHHHCCCCHHHEEEEHHHHHHHHCCCCCC T ss_conf 79979997258589999998----67-8----988999999899999999999860733011233001110001035542 Q ss_pred CEEEEEEC Q ss_conf 56999812 Q gi|254780410|r 150 FTFLVANE 157 (362) Q Consensus 150 ~~iiiaNE 157 (362) +.+|++|- T Consensus 120 fD~Iv~NP 127 (259) T 3lpm_A 120 ADIVTCNP 127 (259) T ss_dssp EEEEEECC T ss_pred CCEEEECC T ss_conf 54788578 No 99 >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural genomics, NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus VF5} Probab=94.02 E-value=0.18 Score=28.66 Aligned_cols=101 Identities=14% Similarity=0.231 Sum_probs=61.3 Q ss_pred CCCCCCCCCCCCCCCC-CCCEEECCCC-CHHHHHHHHH------------HHHHHHHHCCCCCCCEEEEECCCCHHHHHH Q ss_conf 0898786468988888-8886457671-1799999999------------999999983888762141007864689888 Q gi|254780410|r 30 ADPEFGYYSTCNPFGA-VGDFVTAPEI-SQIFGEMLAI------------FLICAWEQHGFPSCVRLVELGPGRGIMMLD 95 (362) Q Consensus 30 y~p~~GYY~~~~~~G~-~GDF~Tsp~i-s~~Fg~~ia~------------~~~~~~~~~~~p~~~~ivE~GaG~G~La~d 95 (362) ++-.+|++.-.+.+|+ .|+-+++-.+ -|...+.+.. =+..+...++....-.|+|+|.|+|.|+.. T Consensus 29 ~~t~~G~~~h~~iig~~~G~~v~~~~~~~p~~~d~~~~~~~r~~qiiypkD~~~Ii~~l~i~pG~rVLEiGtGsG~lt~~ 108 (248) T 2yvl_A 29 LSVKKSVLKFDEVIGKPEGVKINGFEVYRPTLEEIILLGFERKTQIIYPKDSFYIALKLNLNKEKRVLEFGTGSGALLAV 108 (248) T ss_dssp EEETTEEEEGGGTTTCCTTEEETTEEEECCCHHHHHHHTSCCSSCCCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHH T ss_pred EEECCEEEEHHHHCCCCCCCEEEEEEEECCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHH T ss_conf 98688698889946999986898899987980899845488887406789999999982899999799737431199999 Q ss_pred HHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHCC--CCHHCC Q ss_conf 799997418564301210236369789999986411102--310110 Q gi|254780410|r 96 ILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASYG--DKINWY 140 (362) Q Consensus 96 iL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~~--~~v~w~ 140 (362) +.+. ..+.+-+|.++...+.-++++..++ ++|.++ T Consensus 109 La~~----------~g~v~t~e~~e~~~~~A~~n~~~~g~~~nv~~~ 145 (248) T 2yvl_A 109 LSEV----------AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFF 145 (248) T ss_dssp HHHH----------SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEE T ss_pred HHHC----------CCEEEEECCCHHHHHHHHHHHHHHCCCCCEEEE T ss_conf 9860----------787999828899999999989970057705999 No 100 >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, structural genomics; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 Probab=93.91 E-value=0.23 Score=27.87 Aligned_cols=78 Identities=10% Similarity=0.079 Sum_probs=53.6 Q ss_pred CCCCEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHH-----HHCCCEEEEECC Q ss_conf 888864576711799999999999999983888762141007864689888799997418564-----301210236369 Q gi|254780410|r 45 AVGDFVTAPEISQIFGEMLAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDF-----FSVLSIYMVETS 119 (362) Q Consensus 45 ~~GDF~Tsp~is~~Fg~~ia~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~-----~~~l~~~ivE~s 119 (362) ..|-|+|-++|..+. +++. .......|++..+|+|.|...+.+.+....... ....+++-+|.+ T Consensus 149 ~~GqffTP~~Iv~~m--------v~ll---~~~~~~~IlDPacGsG~fL~~~~~~~~~~~~~~~~~~~~~~~~i~G~e~~ 217 (445) T 2okc_A 149 GAGQYFTPRPLIQAM--------VDCI---NPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNT 217 (445) T ss_dssp CCGGGCCCHHHHHHH--------HHHH---CCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESC T ss_pred CCCEECCCHHHHHHH--------HHHC---CCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCEECEECC T ss_conf 380465989999999--------9760---79999978127889766599999999873122777755301014234120 Q ss_pred HHHHHHHHHHHHHC Q ss_conf 78999998641110 Q gi|254780410|r 120 ERLTLIQKKQLASY 133 (362) Q Consensus 120 ~~l~~~Q~~~l~~~ 133 (362) +......+.++.-+ T Consensus 218 ~~~~~la~~nl~l~ 231 (445) T 2okc_A 218 PLVVTLASMNLYLH 231 (445) T ss_dssp HHHHHHHHHHHHHT T ss_pred HHHHHHHHHHCCCC T ss_conf 99999999623102 No 101 >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} Probab=93.84 E-value=0.2 Score=28.35 Aligned_cols=50 Identities=18% Similarity=0.306 Sum_probs=34.7 Q ss_pred CCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHCCCCHHC Q ss_conf 6214100786468988879999741856430121023636978999998641110231011 Q gi|254780410|r 79 CVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASYGDKINW 139 (362) Q Consensus 79 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~~~~v~w 139 (362) .-.|+|+|+|+|.++..+. + ..+++-+|+|+.+.+.-+++..+...++.+ T Consensus 34 ~~~VLD~GCG~G~~~~~la----~-------~~~v~giD~s~~~l~~a~~~~~~~~~~i~~ 83 (243) T 3d2l_A 34 GKRIADIGCGTGTATLLLA----D-------HYEVTGVDLSEEMLEIAQEKAMETNRHVDF 83 (243) T ss_dssp TCEEEEESCTTCHHHHHHT----T-------TSEEEEEESCHHHHHHHHHHHHHTTCCCEE T ss_pred CCEEEEECCCCCHHHHHHH----H-------CCEEEEEECCHHHHHHHHHHHHHCCCEEEE T ss_conf 9999996887879999986----1-------857999988518899988765301202331 No 102 >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, structural genomics; 2.00A {Methanocaldococcus jannaschii DSM2661} Probab=93.79 E-value=0.22 Score=28.07 Aligned_cols=74 Identities=16% Similarity=0.253 Sum_probs=49.5 Q ss_pred CCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHH Q ss_conf 88888886457671179999999999999998388876214100786468988879999741856430121023636978 Q gi|254780410|r 42 PFGAVGDFVTAPEISQIFGEMLAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSER 121 (362) Q Consensus 42 ~~G~~GDF~Tsp~is~~Fg~~ia~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~ 121 (362) ++| .|-.+.+|++ .| .+++.+.....-.|+|+|+|+|.+++-+-+-.. ..-..+.+|.++. T Consensus 53 ~i~-~~~~i~~P~~-------~a----~~l~~l~l~~g~~VLeIGtGsGY~ta~la~l~g-------~~g~V~~iE~~~~ 113 (215) T 2yxe_A 53 EIG-YGQTISAIHM-------VG----MMCELLDLKPGMKVLEIGTGCGYHAAVTAEIVG-------EDGLVVSIERIPE 113 (215) T ss_dssp EEE-TTEEECCHHH-------HH----HHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHC-------TTSEEEEEESCHH T ss_pred CCC-CCCCCCCHHH-------HH----HHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHC-------CCCEEEEEECCHH T ss_conf 578-8861287799-------99----999863589998899827884199999999848-------8871899952889 Q ss_pred HHHHHHHHHHHCC Q ss_conf 9999986411102 Q gi|254780410|r 122 LTLIQKKQLASYG 134 (362) Q Consensus 122 l~~~Q~~~l~~~~ 134 (362) +.+.-++++...+ T Consensus 114 l~~~a~~~l~~~~ 126 (215) T 2yxe_A 114 LAEKAERTLRKLG 126 (215) T ss_dssp HHHHHHHHHHHHT T ss_pred HHHHHHHHHHHCC T ss_conf 9999999998615 No 103 >2yxd_A Probable cobalt-precorrin-6Y C(15)- methyltransferase [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii DSM2661} Probab=93.76 E-value=0.18 Score=28.59 Aligned_cols=96 Identities=15% Similarity=0.241 Sum_probs=57.4 Q ss_pred CCCCEEECCCC--CHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHH Q ss_conf 88886457671--1799999999999999983888762141007864689888799997418564301210236369789 Q gi|254780410|r 45 AVGDFVTAPEI--SQIFGEMLAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERL 122 (362) Q Consensus 45 ~~GDF~Tsp~i--s~~Fg~~ia~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l 122 (362) .+.+|.+.+.+ ++-=-..+ .+..++....-.|+|+|+|+|.++..+.+. .-+++.+|.++.. T Consensus 6 ~d~~F~~~~~~p~Tk~evR~l------~l~~L~l~~~~~VlDlg~G~G~~si~la~~----------~~~V~ave~~~~~ 69 (183) T 2yxd_A 6 PDEEFIRREGVPITKEEIRAV------SIGKLNLNKDDVVVDVGCGSGGMTVEIAKR----------CKFVYAIDYLDGA 69 (183) T ss_dssp CSTTSCCBTTBCCCCHHHHHH------HHHHHCCCTTCEEEEESCCCSHHHHHHHTT----------SSEEEEEECSHHH T ss_pred CHHHHCCCCCCCCCHHHHHHH------HHHHCCCCCCCEEEEEECCCCHHHHHHHHH----------CCEEEEEECCHHH T ss_conf 879972689998787999999------999769989499999617476999998873----------8999999798999 Q ss_pred HHHHHHHHHHCC-CCHHCCCCHHHCCCCCEEEEEECCCCCCCEEEE Q ss_conf 999986411102-310110434444569569998122887523589 Q gi|254780410|r 123 TLIQKKQLASYG-DKINWYTSLADVPLGFTFLVANEFFDSLPIKQF 167 (362) Q Consensus 123 ~~~Q~~~l~~~~-~~v~w~~~l~~~~~~~~iiiaNE~lDAlPv~~~ 167 (362) .+.-+++...++ +++.++.. . +.|+++.+|++++ T Consensus 70 i~~a~~n~~~~gv~nv~~i~g------~-----a~~~l~~~~~D~v 104 (183) T 2yxd_A 70 IEVTKQNLAKFNIKNCQIIKG------R-----AEDVLDKLEFNKA 104 (183) T ss_dssp HHHHHHHHHHTTCCSEEEEES------C-----HHHHGGGCCCSEE T ss_pred HHHHHHHHHHCCCCCEEEEEC------C-----HHHHHHCCCCCEE T ss_conf 999999999768998799946------4-----5656406998949 No 104 >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 1pry_A Probab=93.65 E-value=0.077 Score=31.17 Aligned_cols=75 Identities=13% Similarity=0.105 Sum_probs=49.2 Q ss_pred CCCEE--ECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHH Q ss_conf 88864--5767117999999999999999838887621410078646898887999974185643012102363697899 Q gi|254780410|r 46 VGDFV--TAPEISQIFGEMLAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLT 123 (362) Q Consensus 46 ~GDF~--Tsp~is~~Fg~~ia~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~ 123 (362) +|+.| -.|--|.+ |..+..-.+.++....-.|+++|+|+|+.+..+.+... | .-.++.||.|+... T Consensus 44 ~~~~~r~w~p~rskl-----~a~i~~~l~~l~i~pG~~VLDlG~G~G~~~~~la~~vg---~----~G~V~avD~s~~~l 111 (227) T 1g8a_A 44 EGEEYRIWNPNRSKL-----GAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVG---W----EGKIFGIEFSPRVL 111 (227) T ss_dssp TTEEEEECCTTTCHH-----HHHHHTTCCCCCCCTTCEEEEETTTSTTHHHHHHHHHC---T----TSEEEEEESCHHHH T ss_pred CCCEEEEECCCHHHH-----HHHHHCCHHHCCCCCCCEEEEEECCCCHHHHHHHHHHC---C----CCEEEEEECCHHHH T ss_conf 881799867853689-----99997035316989999999971787889999999848---9----96699998999999 Q ss_pred HHHHHHHHH Q ss_conf 999864111 Q gi|254780410|r 124 LIQKKQLAS 132 (362) Q Consensus 124 ~~Q~~~l~~ 132 (362) +.-+++... T Consensus 112 ~~l~~~~~~ 120 (227) T 1g8a_A 112 RELVPIVEE 120 (227) T ss_dssp HHHHHHHSS T ss_pred HHHHHHHHH T ss_conf 999987876 No 105 >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* Probab=93.63 E-value=0.37 Score=26.52 Aligned_cols=150 Identities=17% Similarity=0.223 Sum_probs=73.7 Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHCCCCHHCCCCHHHCCCCCEEEEEEC Q ss_conf 76214100786468988879999741856430121023636978999998641110231011043444456956999812 Q gi|254780410|r 78 SCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASYGDKINWYTSLADVPLGFTFLVANE 157 (362) Q Consensus 78 ~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~~~~v~w~~~l~~~~~~~~iiiaNE 157 (362) ..-.||++|+|+|.++..+++. .|+ ++.+.++.+. ....-++++...+ .... .-+.+.. T Consensus 169 ~~~~vlDvGgG~G~~~~~l~~~----~P~----~~~~~~Dlp~-~~~~a~~~~~~~~-----------~~~r-i~~~~~d 227 (332) T 3i53_A 169 ALGHVVDVGGGSGGLLSALLTA----HED----LSGTVLDLQG-PASAAHRRFLDTG-----------LSGR-AQVVVGS 227 (332) T ss_dssp GGSEEEEETCTTSHHHHHHHHH----CTT----CEEEEEECHH-HHHHHHHHHHHTT-----------CTTT-EEEEECC T ss_pred CCCEEEECCCCCCHHHHHHHHH----CCC----CEEEEEECHH-HHHHHHHHHHHCC-----------CCCC-EEEECCC T ss_conf 6747875289976999999997----899----8699997843-8999998756416-----------7874-5773375 Q ss_pred CCCCCCEEEEEEECCCCEEEEEEEEECCCEEECCCCCCCCCCCCCCCCCCCCCEECCC-HHHHHHHHHHHHHHHHCCEEE Q ss_conf 2887523589991566468998996079535225764343223463316568411279-347899999999762057059 Q gi|254780410|r 158 FFDSLPIKQFVMTEHGIRERMIDIDQHDSLVFNIGDHEIKSNFLTCSDYFLGAIFENS-PCRDREMQSISDRLACDGGTA 236 (362) Q Consensus 158 ~lDAlPv~~~~~~~~~w~E~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~E~~-~~~~~~~~~i~~~l~~~~G~~ 236 (362) +||.+|.. + ..++ +. . + + .+ ++ ......++.+.+.++. +|.+ T Consensus 228 ~~~~~p~~-~--------D~~~-~~--~----v---------l---h~--------~~d~~~~~iL~~~~~~L~p-gG~l 270 (332) T 3i53_A 228 FFDPLPAG-A--------GGYV-LS--A----V---------L---HD--------WDDLSAVAILRRCAEAAGS-GGVV 270 (332) T ss_dssp TTSCCCCS-C--------SEEE-EE--S----C---------G---GG--------SCHHHHHHHHHHHHHHHTT-TCEE T ss_pred CCCCCCCC-C--------CEEE-EE--C----C---------C---CC--------CCHHHHHHHHHHHHHHCCC-CCEE T ss_conf 12358998-7--------3899-72--1----4---------5---67--------8989999999999997599-9889 Q ss_pred EEECCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEECCE Q ss_conf 996243368588880776405767670001000345312688999999996898363323 Q gi|254780410|r 237 IVIDYGYLQSRVGDTLQAVKGHTYVSPLVNPGQADLSSHVDFQRLSSIAILYKLYINGLT 296 (362) Q Consensus 237 L~iDYGy~~~r~~gTLr~y~~H~~~dpl~~pG~~DITahVnFs~L~~~a~~~g~~~~g~~ 296 (362) +++|+=....+ .++.... .-+...|-. .-..+.++..++++|+++.... T Consensus 271 li~d~~~~~~~-~~~~~d~------~m~~~~~g~----~rt~~e~~~ll~~aGf~~~~~~ 319 (332) T 3i53_A 271 LVIEAVAGDEH-AGTGMDL------RMLTYFGGK----ERSLAELGELAAQAGLAVRAAH 319 (332) T ss_dssp EEEECCCC----CCHHHHH------HHHHHHSCC----CCCHHHHHHHHHHTTEEEEEEE T ss_pred EEEECCCCCCC-CCCHHHH------HHHHHCCCC----CCCHHHHHHHHHHCCCEEEEEE T ss_conf 99961679986-4204459------999865993----7899999999998799677999 No 106 >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 1.90A {Geobacter sulfurreducens pca} Probab=93.54 E-value=0.21 Score=28.15 Aligned_cols=73 Identities=19% Similarity=0.289 Sum_probs=45.7 Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHH Q ss_conf 67117999999999999999838887621410078646898887999974185643012102363697899999864111 Q gi|254780410|r 53 PEISQIFGEMLAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLAS 132 (362) Q Consensus 53 p~is~~Fg~~ia~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~ 132 (362) |.++|-=|++|+.. + +...|. +|+|+|.|.|.-+.-+.+.+ .+ .-+++.+|.++...+.-++++.. T Consensus 38 p~i~~~~g~~L~~L-~----~~~~~~--~ILEiGtg~G~st~~la~~~---~~----~g~v~~id~~~~~~~~ar~~~~~ 103 (210) T 3c3p_A 38 PIVDRQTGRLLYLL-A----RIKQPQ--LVVVPGDGLGCASWWFARAI---SI----SSRVVMIDPDRDNVEHARRMLHD 103 (210) T ss_dssp CCCCHHHHHHHHHH-H----HHHCCS--EEEEESCGGGHHHHHHHTTS---CT----TCEEEEEESCHHHHHHHHHHHHH T ss_pred CCCCHHHHHHHHHH-H----HHHCCC--EEEEEECCCHHHHHHHHHHC---CC----CEEEEEEECCCCHHHHHHHHHHH T ss_conf 97898999999999-8----856809--89995081439999999975---56----81999997751037899987987 Q ss_pred CC--CCHHC Q ss_conf 02--31011 Q gi|254780410|r 133 YG--DKINW 139 (362) Q Consensus 133 ~~--~~v~w 139 (362) .+ ++|.. T Consensus 104 ~g~~~~i~~ 112 (210) T 3c3p_A 104 NGLIDRVEL 112 (210) T ss_dssp HSGGGGEEE T ss_pred CCCCCEEEE T ss_conf 298732678 No 107 >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* Probab=93.39 E-value=0.029 Score=34.06 Aligned_cols=80 Identities=14% Similarity=0.054 Sum_probs=51.3 Q ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHCCCCHHCC-CCHH-HCCC-CCEE Q ss_conf 88762141007864689888799997418564301210236369789999986411102310110-4344-4456-9569 Q gi|254780410|r 76 FPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASYGDKINWY-TSLA-DVPL-GFTF 152 (362) Q Consensus 76 ~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~~~~v~w~-~~l~-~~~~-~~~i 152 (362) .|.+-.|+|+|.|.|.++..+++ ..|+ ..|+-++.|+...+.-++++.....++.+. .++. ..+. ...+ T Consensus 130 ~~~~~~vlD~GcG~G~~~~~l~~----~~~~----~~v~g~D~s~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~ 201 (281) T 3lcv_B 130 LPRPNTLRDLACGLNPLAAPWMG----LPAE----TVYIASDIDARLVGFVDEALTRLNVPHRTNVADLLEDRLDEPADV 201 (281) T ss_dssp SCCCSEEEETTCTTGGGCCTTTT----CCTT----CEEEEEESBHHHHHHHHHHHHHTTCCEEEEECCTTTSCCCSCCSE T ss_pred CCCCCEEEEECCCCCHHHHHHHH----HCCC----CEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECHHHHCCCCCCCE T ss_conf 89998699838988889999997----4997----749996599999999999998668873899813544076556567 Q ss_pred EEEECCCCCCC Q ss_conf 99812288752 Q gi|254780410|r 153 LVANEFFDSLP 163 (362) Q Consensus 153 iiaNE~lDAlP 163 (362) +++.++|..+| T Consensus 202 v~~~~vl~hl~ 212 (281) T 3lcv_B 202 TLLLKTLPCLE 212 (281) T ss_dssp EEETTCHHHHH T ss_pred EEEHHHHHHCC T ss_conf 76534487549 No 108 >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} Probab=93.28 E-value=0.39 Score=26.31 Aligned_cols=77 Identities=14% Similarity=0.277 Sum_probs=51.0 Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHH Q ss_conf 67117999999999999999838887621410078646898887999974185643012102363697899999864111 Q gi|254780410|r 53 PEISQIFGEMLAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLAS 132 (362) Q Consensus 53 p~is~~Fg~~ia~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~ 132 (362) |.++|.=|+++.. +... .....+-.|+|+|.|.|.-+.-+++.+. | .-+++.||.++...+.-++.+.. T Consensus 35 ~~~~~~~g~~l~~-La~~---~~~~~~~~vlEiGt~~G~stl~la~al~---~----~g~l~tIE~~~e~~~~Ar~~~~~ 103 (221) T 3dr5_A 35 PAPDEMTGQLLTT-LAAT---TNGNGSTGAIAITPAAGLVGLYILNGLA---D----NTTLTCIDPESEHQRQAKALFRE 103 (221) T ss_dssp CCCCHHHHHHHHH-HHHH---SCCTTCCEEEEESTTHHHHHHHHHHHSC---T----TSEEEEECSCHHHHHHHHHHHHH T ss_pred CCCCHHHHHHHHH-HHHH---HCCCCCCEEEEECCCHHHHHHHHHHHCC---C----CCEEEEEECCHHHHHHHHHHHHH T ss_conf 9988769999999-9998---5123899899972805799999998479---9----97899998999999999999996 Q ss_pred CC---CCHHCC Q ss_conf 02---310110 Q gi|254780410|r 133 YG---DKINWY 140 (362) Q Consensus 133 ~~---~~v~w~ 140 (362) .+ .+|..+ T Consensus 104 ag~~~~rv~~i 114 (221) T 3dr5_A 104 AGYSPSRVRFL 114 (221) T ss_dssp TTCCGGGEEEE T ss_pred CCCCCCEEEEE T ss_conf 68876246773 No 109 >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in europe; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* Probab=93.25 E-value=0.45 Score=25.91 Aligned_cols=149 Identities=16% Similarity=0.212 Sum_probs=74.1 Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHCCCCHHCCCCHHHCCCCCEEEEEE Q ss_conf 87621410078646898887999974185643012102363697899999864111023101104344445695699981 Q gi|254780410|r 77 PSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASYGDKINWYTSLADVPLGFTFLVAN 156 (362) Q Consensus 77 p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~~~~v~w~~~l~~~~~~~~iiiaN 156 (362) ...-.|+++|+|.|.++..+++. .|+ ++.+.++.++ ..+.-++++.+.+ .... .-+.+. T Consensus 181 ~~~~~vlDvG~G~G~~~~~l~~~----~P~----~~~~~~D~~~-~~~~a~~~~~~~~-----------~~~~-i~~~~~ 239 (374) T 1qzz_A 181 SAVRHVLDVGGGNGGMLAAIALR----APH----LRGTLVELAG-PAERARRRFADAG-----------LADR-VTVAEG 239 (374) T ss_dssp TTCCEEEEETCTTSHHHHHHHHH----CTT----CEEEEEECHH-HHHHHHHHHHHTT-----------CTTT-EEEEEC T ss_pred CCCCEEEEECCCCCHHHHHHHHH----CCC----EEEEEEECHH-HHHHHHHHHHHCC-----------CCCE-EEEEEC T ss_conf 56878999799887889999997----897----2899960788-8999999988558-----------8622-788704 Q ss_pred CCCCCCCEEEEEEECCCCEEEEEEEEECCCEEECCCCCCCCCCCCCCCCCCCCCEECCCHHHHHHHHHHHHHHHHCCEEE Q ss_conf 22887523589991566468998996079535225764343223463316568411279347899999999762057059 Q gi|254780410|r 157 EFFDSLPIKQFVMTEHGIRERMIDIDQHDSLVFNIGDHEIKSNFLTCSDYFLGAIFENSPCRDREMQSISDRLACDGGTA 236 (362) Q Consensus 157 E~lDAlPv~~~~~~~~~w~E~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~E~~~~~~~~~~~i~~~l~~~~G~~ 236 (362) .+++..|.. + -.++ . . . + + .++. .......++.+.+.++. +|.+ T Consensus 240 d~~~~~p~~-~--------D~v~-~-~-~----v---------l---h~~~-------d~~~~~iL~~~~~~L~p-gG~l 283 (374) T 1qzz_A 240 DFFKPLPVT-A--------DVVL-L-S-F----V---------L---LNWS-------DEDALTILRGCVRALEP-GGRL 283 (374) T ss_dssp CTTSCCSCC-E--------EEEE-E-E-S----C---------G---GGSC-------HHHHHHHHHHHHHHEEE-EEEE T ss_pred HHHHCCCCC-C--------CEEE-E-E-E----E---------E---ECCC-------HHHHHHHHHHHHHHCCC-CCEE T ss_conf 144318987-7--------4899-8-4-2----2---------4---2389-------89999999999986298-9889 Q ss_pred EEECCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCC-------CCHHHHHHHHHHCCCEEECC Q ss_conf 996243368588880776405767670001000345312-------68899999999689836332 Q gi|254780410|r 237 IVIDYGYLQSRVGDTLQAVKGHTYVSPLVNPGQADLSSH-------VDFQRLSSIAILYKLYINGL 295 (362) Q Consensus 237 L~iDYGy~~~r~~gTLr~y~~H~~~dpl~~pG~~DITah-------VnFs~L~~~a~~~g~~~~g~ 295 (362) +++|+-....... ++... -..|+.-. -....+...++++|+++... T Consensus 284 li~d~~~~~~~~~------------~~~~~-~~~dl~m~~~~~G~~rt~~e~~~ll~~AGf~~~~~ 336 (374) T 1qzz_A 284 LVLDRADVEGDGA------------DRFFS-TLLDLRMLTFMGGRVRTRDEVVDLAGSAGLALASE 336 (374) T ss_dssp EEEECCH-------------------HHHH-HHHHHHHHHHHSCCCCCHHHHHHHHHTTTEEEEEE T ss_pred EEEEECCCCCCCC------------CHHHH-HHHHHHHHHHCCCCCCCHHHHHHHHHHCCCEEEEE T ss_conf 9998024799873------------26789-99889999857991689999999999869967699 No 110 >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} Probab=93.20 E-value=0.24 Score=27.75 Aligned_cols=42 Identities=19% Similarity=0.323 Sum_probs=29.4 Q ss_pred CCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHH Q ss_conf 6214100786468988879999741856430121023636978999998641 Q gi|254780410|r 79 CVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQL 130 (362) Q Consensus 79 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l 130 (362) .-.|+|+|.|+|.++.-+. .. ..+++-||.|+...+.-++++ T Consensus 42 ~~~vLDiGCG~G~~~~~l~----~~------g~~v~GiD~s~~~i~~a~~~~ 83 (240) T 3dli_A 42 CRRVLDIGCGRGEFLELCK----EE------GIESIGVDINEDMIKFCEGKF 83 (240) T ss_dssp CSCEEEETCTTTHHHHHHH----HH------TCCEEEECSCHHHHHHHHTTS T ss_pred CCEEEEECCCCCHHHHHHH----HC------CCEEEEEECCHHHHHHHHHHC T ss_conf 9969997387859999999----77------995999967707878876511 No 111 >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxylating); porphyrin metabolism, S-adenosyl-methionine, structural genomics; 1.80A {Geobacter metallireducens gs-15} Probab=93.14 E-value=0.25 Score=27.62 Aligned_cols=55 Identities=11% Similarity=0.232 Sum_probs=40.1 Q ss_pred HHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHCC Q ss_conf 983888762141007864689888799997418564301210236369789999986411102 Q gi|254780410|r 72 EQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASYG 134 (362) Q Consensus 72 ~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~~ 134 (362) .+++.+..-.|+|+|+|+|.++..+.+. .| ..+.+.+|.|+...+.-++++..++ T Consensus 34 ~~L~l~pg~~VLDiG~GsG~la~~~a~~----~~----~~~V~aiD~~~~~~~~a~~n~~~~g 88 (204) T 3e05_A 34 SKLRLQDDLVMWDIGAGSASVSIEASNL----MP----NGRIFALERNPQYLGFIRDNLKKFV 88 (204) T ss_dssp HHTTCCTTCEEEEETCTTCHHHHHHHHH----CT----TSEEEEEECCHHHHHHHHHHHHHHT T ss_pred HHCCCCCCCEEEEEEEEHHHHHHHHHHH----CC----CCEEEEEECCHHHHHHHHHHHHHCC T ss_conf 8609999399999831078999999997----89----9679999499999999999999819 No 112 >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG; HET: MSE; 2.15A {Nostoc punctiforme pcc 73102} Probab=93.07 E-value=0.48 Score=25.74 Aligned_cols=47 Identities=11% Similarity=0.292 Sum_probs=31.5 Q ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHH Q ss_conf 88762141007864689888799997418564301210236369789999986411 Q gi|254780410|r 76 FPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLA 131 (362) Q Consensus 76 ~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~ 131 (362) .+...+|+|+|+|+|.++..+++. .|+ ++.+.++.++ ..+.-+++.. T Consensus 163 ~~~~~~vLDvG~G~G~~~~~l~~~----~p~----~~~~~~Dlp~-~~~~a~~~~~ 209 (335) T 2r3s_A 163 KIEPLKVLDISASHGLFGIAVAQH----NPN----AEIFGVDWAS-VLEVAKENAR 209 (335) T ss_dssp -CCCSEEEEETCTTCHHHHHHHHH----CTT----CEEEEEECHH-HHHHHHHHHH T ss_pred CCCCCEEEEECCCCCHHHHHHHHH----CCC----CCEEEECCHH-HHHHHHHHHH T ss_conf 688987999799962999999985----898----7737744678-8899998788 No 113 >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* Probab=93.04 E-value=0.24 Score=27.73 Aligned_cols=67 Identities=19% Similarity=0.261 Sum_probs=46.3 Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHC Q ss_conf 71179999999999999998388876214100786468988879999741856430121023636978999998641110 Q gi|254780410|r 54 EISQIFGEMLAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASY 133 (362) Q Consensus 54 ~is~~Fg~~ia~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~ 133 (362) .+||.=|++|...+ +...|. +|+|+|.|.|.-+.-+.+.+ | ..-+++.+|.++...+..++.+... T Consensus 41 ~i~p~~g~~L~~L~-----~~~~pk--~ILEiGt~~G~St~~la~al----~---~~g~i~tie~~~~~~~~a~~~~~~~ 106 (223) T 3duw_A 41 DVSPTQGKFLQLLV-----QIQGAR--NILEIGTLGGYSTIWLARGL----S---SGGRVVTLEASEKHADIARSNIERA 106 (223) T ss_dssp SCCHHHHHHHHHHH-----HHHTCS--EEEEECCTTSHHHHHHHTTC----C---SSCEEEEEESCHHHHHHHHHHHHHT T ss_pred CCCHHHHHHHHHHH-----HHHCCC--EEEEEECCCCHHHHHHHHHC----C---CCCEEEEEECCHHHHHHHHHHHHHC T ss_conf 46999999999999-----974998--89998344278999999748----8---8885999944888899999999984 Q ss_pred C Q ss_conf 2 Q gi|254780410|r 134 G 134 (362) Q Consensus 134 ~ 134 (362) + T Consensus 107 g 107 (223) T 3duw_A 107 N 107 (223) T ss_dssp T T ss_pred C T ss_conf 9 No 114 >1or8_A Protein arginine N-methyltransferase 1; protein arginine methylation, adoMet-dependent methylation, transferase; HET: SAH; 2.35A {Rattus norvegicus} SCOP: c.66.1.6 PDB: 1orh_A* 1ori_A* Probab=92.84 E-value=0.23 Score=27.92 Aligned_cols=75 Identities=12% Similarity=0.177 Sum_probs=44.9 Q ss_pred CEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHH--CCCCHHCC-CCHHHCC---CCCEEE Q ss_conf 21410078646898887999974185643012102363697899999864111--02310110-4344445---695699 Q gi|254780410|r 80 VRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLAS--YGDKINWY-TSLADVP---LGFTFL 153 (362) Q Consensus 80 ~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~--~~~~v~w~-~~l~~~~---~~~~ii 153 (362) -.|+++|+|+|.|+.-..+ . ..-+.+.+|.|+.. +..++.+.. +.++|.-+ .+..+++ ....+| T Consensus 59 ~~VLDiG~G~G~ls~~aa~----~-----Ga~~V~ave~s~~~-~~a~~~~~~n~~~~~i~~~~~~~~~l~~~~~~~Dvi 128 (340) T 1or8_A 59 KVVLDVGSGTGILCMFAAK----A-----GARKVIGIECSSIS-DYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDII 128 (340) T ss_dssp CEEEEETCTTSHHHHHHHH----T-----TCSEEEEEECSTHH-HHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEE T ss_pred CEEEEECCCCCHHHHHHHH----C-----CCCEEEEECCHHHH-HHHHHHHHHCCCCCEEEEEEEEEEECCCCCCCCCEE T ss_conf 9799983788799999998----0-----89889996461999-999999997287832799973134303786531079 Q ss_pred EEECCCCCCCEE Q ss_conf 981228875235 Q gi|254780410|r 154 VANEFFDSLPIK 165 (362) Q Consensus 154 iaNE~lDAlPv~ 165 (362) +| |+++....+ T Consensus 129 vs-E~~~~~l~~ 139 (340) T 1or8_A 129 IS-EWMGYCLFY 139 (340) T ss_dssp EE-CCCBBTBTB T ss_pred EE-EECHHCCCC T ss_conf 97-501010440 No 115 >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransferase posttranslational modification; 1.59A {Thermus thermophilus HB8} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* Probab=92.78 E-value=0.31 Score=27.00 Aligned_cols=61 Identities=16% Similarity=0.226 Sum_probs=39.4 Q ss_pred HHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHCCCC Q ss_conf 999999998388876214100786468988879999741856430121023636978999998641110231 Q gi|254780410|r 65 IFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASYGDK 136 (362) Q Consensus 65 ~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~~~~ 136 (362) +-+++...+...| .-.|+++|.|+|.|+.-..+ .. .+.+-++.++...+.-+++....+.+ T Consensus 108 ~l~l~~l~~~~~~-g~~VLDvGcGsGiLsi~aak----~G------~~V~aiDid~~av~~a~~N~~~N~v~ 168 (254) T 2nxc_A 108 RLALKALARHLRP-GDKVLDLGTGSGVLAIAAEK----LG------GKALGVDIDPMVLPQAEANAKRNGVR 168 (254) T ss_dssp HHHHHHHHHHCCT-TCEEEEETCTTSHHHHHHHH----TT------CEEEEEESCGGGHHHHHHHHHHTTCC T ss_pred HHHHHHHHHHCCC-CCEEEEECCCCCHHHHHHHH----CC------CEEEEEECCHHHHHHHHHHHHHHCCC T ss_conf 9999999841799-79899971777888999984----59------98999988727889999989970994 No 116 >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 1f3l_A* Probab=92.75 E-value=0.48 Score=25.69 Aligned_cols=76 Identities=17% Similarity=0.245 Sum_probs=44.2 Q ss_pred CCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHH-HHHCCCCHHCC-CCHHHCC---CCCEEE Q ss_conf 621410078646898887999974185643012102363697899999864-11102310110-4344445---695699 Q gi|254780410|r 79 CVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQ-LASYGDKINWY-TSLADVP---LGFTFL 153 (362) Q Consensus 79 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~-l~~~~~~v~w~-~~l~~~~---~~~~ii 153 (362) .-.|+|+|+|+|.|+.-..+. ...+++.||.|+......+.. -.....+|+.+ .+..+++ ....+| T Consensus 65 ~k~VLDlGcGtG~ls~~aA~~---------Ga~~V~avd~s~~~~~a~~~~~~~~~~~~i~~i~~d~~~l~~~~~~~D~i 135 (340) T 2fyt_A 65 DKVVLDVGCGTGILSMFAAKA---------GAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVI 135 (340) T ss_dssp TCEEEEETCTTSHHHHHHHHT---------TCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEE T ss_pred CCEEEEECCCCCHHHHHHHHC---------CCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEEEEHHHCCCCCCCCCEE T ss_conf 698999327747999999975---------99889998098999999999997454775168981488764764667689 Q ss_pred EEECCCCCCCE Q ss_conf 98122887523 Q gi|254780410|r 154 VANEFFDSLPI 164 (362) Q Consensus 154 iaNE~lDAlPv 164 (362) ++ |+++..+. T Consensus 136 vs-e~~~~~~~ 145 (340) T 2fyt_A 136 IS-EWMGYFLL 145 (340) T ss_dssp EE-CCCBTTBT T ss_pred EE-ECCCEECC T ss_conf 99-63210045 No 117 >2esr_A Methyltransferase; structural genomics, hypothetical protein, PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes MGAS10394} SCOP: c.66.1.46 Probab=92.73 E-value=0.37 Score=26.52 Aligned_cols=68 Identities=15% Similarity=0.251 Sum_probs=42.8 Q ss_pred EECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHH Q ss_conf 45767117999999999999999838887621410078646898887999974185643012102363697899999864 Q gi|254780410|r 50 VTAPEISQIFGEMLAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQ 129 (362) Q Consensus 50 ~Tsp~is~~Fg~~ia~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~ 129 (362) .|=|..+.+-..+ .+++... -..-.|+++|+|+|.++...+. + ..-+.+.||.++...+..+++ T Consensus 10 ~~RPt~~~vre~l-----fn~L~~~--~~g~~vLDl~~GsG~~~iea~~---r------~a~~v~~ve~~~~a~~~~~~n 73 (177) T 2esr_A 10 ITRPTSDKVRGAI-----FNMIGPY--FNGGRVLDLFAGSGGLAIEAVS---R------GMSAAVLVEKNRKAQAIIQDN 73 (177) T ss_dssp --------CHHHH-----HHHHCSC--CCSCEEEEETCTTCHHHHHHHH---T------TCCEEEEECCCHHHHHHHHHH T ss_pred CCCCCCHHHHHHH-----HHHHHHH--CCCCEEEECCEEHHHHHHHHHH---C------CCCCCEEEECHHHHHHHHHHH T ss_conf 8786848999999-----9987755--6989799995037999999997---3------862016783428899988875 Q ss_pred HHHC Q ss_conf 1110 Q gi|254780410|r 130 LASY 133 (362) Q Consensus 130 l~~~ 133 (362) +... T Consensus 74 ~~~~ 77 (177) T 2esr_A 74 IIMT 77 (177) T ss_dssp HHTT T ss_pred HHHH T ss_conf 7651 No 118 >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; HET: MSE; 1.90A {Bacillus halodurans c-125} Probab=92.68 E-value=0.47 Score=25.80 Aligned_cols=67 Identities=24% Similarity=0.406 Sum_probs=45.2 Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHH Q ss_conf 67117999999999999999838887621410078646898887999974185643012102363697899999864111 Q gi|254780410|r 53 PEISQIFGEMLAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLAS 132 (362) Q Consensus 53 p~is~~Fg~~ia~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~ 132 (362) |-+++.=|++|.. ++ .+..|. .|+|+|.|.|.-+.-+++.+ |+ .+++.+|.++...+..++.+.. T Consensus 36 pii~~~~~~~l~~-l~----~~~~~~--~VLEIGtg~G~Stl~la~~~----p~----~~v~tiD~~~~~~~~A~~~~~~ 100 (233) T 2gpy_A 36 PIMDLLGMESLLH-LL----KMAAPA--RILEIGTAIGYSAIRMAQAL----PE----ATIVSIERDERRYEEAHKHVKA 100 (233) T ss_dssp CCCCHHHHHHHHH-HH----HHHCCS--EEEEECCTTSHHHHHHHHHC----TT----CEEEEECCCHHHHHHHHHHHHH T ss_pred CCCCHHHHHHHHH-HH----HHHCCC--EEEEEECCCCHHHHHHHHHC----CC----CEEEEEEECHHHHHHHHHHHHH T ss_conf 9778899999999-98----865899--89996112129999999878----99----7799997048999999999999 Q ss_pred CC Q ss_conf 02 Q gi|254780410|r 133 YG 134 (362) Q Consensus 133 ~~ 134 (362) .+ T Consensus 101 ~g 102 (233) T 2gpy_A 101 LG 102 (233) T ss_dssp TT T ss_pred HH T ss_conf 74 No 119 >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1- carboxylic acid, PHZM; 1.80A {Pseudomonas aeruginosa PAO1} Probab=92.62 E-value=0.35 Score=26.68 Aligned_cols=110 Identities=18% Similarity=0.243 Sum_probs=59.8 Q ss_pred CCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHCCCCHHCCCCHHHCCCCCEEEEEECC Q ss_conf 62141007864689888799997418564301210236369789999986411102310110434444569569998122 Q gi|254780410|r 79 CVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASYGDKINWYTSLADVPLGFTFLVANEF 158 (362) Q Consensus 79 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~~~~v~w~~~l~~~~~~~~iiiaNE~ 158 (362) .-.|+++|+|+|.++..+++. .|+ ++.++++... ..+.-++++...+ .... .-+.+-.+ T Consensus 168 ~~~vlDvG~G~G~~~~~l~~~----~P~----l~~~~~Dlp~-~~~~a~~~~~~~~-----------~~~r-i~~~~gd~ 226 (334) T 2ip2_A 168 GRSFVDVGGGSGELTKAILQA----EPS----ARGVMLDREG-SLGVARDNLSSLL-----------AGER-VSLVGGDM 226 (334) T ss_dssp TCEEEEETCTTCHHHHHHHHH----CTT----CEEEEEECTT-CTHHHHHHTHHHH-----------HTTS-EEEEESCT T ss_pred CCEEEECCCCCCHHHHHHHHH----CCC----EEEEEECCCC-HHHHHHHHHHHCC-----------CCCE-EEEECCCH T ss_conf 886730389876888888986----996----4999822851-1289987676507-----------7770-69971776 Q ss_pred CCCCCEEEEEEECCCCEEEEEEEEECCCEEECCCCCCCCCCCCCCCCCCCCCEECCCH-HHHHHHHHHHHHHHHCCEEEE Q ss_conf 8875235899915664689989960795352257643432234633165684112793-478999999997620570599 Q gi|254780410|r 159 FDSLPIKQFVMTEHGIRERMIDIDQHDSLVFNIGDHEIKSNFLTCSDYFLGAIFENSP-CRDREMQSISDRLACDGGTAI 237 (362) Q Consensus 159 lDAlPv~~~~~~~~~w~E~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~E~~~-~~~~~~~~i~~~l~~~~G~~L 237 (362) ||.+|.. + -. |-+ .+ .. .+ ++. .....++.+.+.++. +|.++ T Consensus 227 ~~~~p~~-~--------D~-v~~-~~---------------vl--h~--------~~d~~~~~iL~~~~~aL~p-gG~ll 269 (334) T 2ip2_A 227 LQEVPSN-G--------DI-YLL-SR---------------II--GD--------LDEAASLRLLGNCREAMAG-DGRVV 269 (334) T ss_dssp TTCCCSS-C--------SE-EEE-ES---------------CG--GG--------CCHHHHHHHHHHHHHHSCT-TCEEE T ss_pred HHCCCCC-C--------CE-EEE-EE---------------EE--CC--------CCHHHHHHHHHHHHHHHCC-CCEEE T ss_conf 5438875-7--------08-999-62---------------11--15--------8978999999999986089-97899 Q ss_pred EECCCCCCC Q ss_conf 962433685 Q gi|254780410|r 238 VIDYGYLQS 246 (362) Q Consensus 238 ~iDYGy~~~ 246 (362) ++|+-.... T Consensus 270 i~e~~~~~~ 278 (334) T 2ip2_A 270 VIERTISAS 278 (334) T ss_dssp EEECCBCSS T ss_pred EEEEECCCC T ss_conf 998504899 No 120 >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} PDB: 1kpi_A* Probab=92.53 E-value=0.56 Score=25.24 Aligned_cols=210 Identities=11% Similarity=0.129 Sum_probs=101.2 Q ss_pred HHHHCCCCCHHHHHHHHHCCCCC----CCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECC Q ss_conf 99818980499999987108987----86468988888888645767117999999999999999838887621410078 Q gi|254780410|r 12 LIKKNGQMTVDQYFALCVADPEF----GYYSTCNPFGAVGDFVTAPEISQIFGEMLAIFLICAWEQHGFPSCVRLVELGP 87 (362) Q Consensus 12 ~I~~~G~i~f~~fM~~aLy~p~~----GYY~~~~~~G~~GDF~Tsp~is~~Fg~~ia~~~~~~~~~~~~p~~~~ivE~Ga 87 (362) .|+++=-++ .+|.+.+| +|.. |||.+.+ - .+ -++=-+-+-.+.+.++....-.|+|+|. T Consensus 19 ~i~~HYD~~-n~fy~~~L-d~~~~YSc~~~~~~~-------------~-tL-~~AQ~~k~~~~~~~l~l~~g~rVLDiGC 81 (302) T 3hem_A 19 AVRSHYDKS-NEFFKLWL-DPSMTYSCAYFERPD-------------M-TL-EEAQYAKRKLALDKLNLEPGMTLLDIGC 81 (302) T ss_dssp HHHHHHTSC-HHHHHHHS-CTTCCCSCCCCSSTT-------------C-CH-HHHHHHHHHHHHHTTCCCTTCEEEEETC T ss_pred HHHHHCCCC-HHHHHHHC-CCCCCEEEEEECCCC-------------C-CH-HHHHHHHHHHHHHHHCCCCCCEEEEECC T ss_conf 898856787-89999857-999876425737999-------------9-99-9999999999999708999898988578 Q ss_pred CCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHCC--CCHHCC-CCHHHCCCCCEEEEEECCCCCCCE Q ss_conf 64689888799997418564301210236369789999986411102--310110-434444569569998122887523 Q gi|254780410|r 88 GRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASYG--DKINWY-TSLADVPLGFTFLVANEFFDSLPI 164 (362) Q Consensus 88 G~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~~--~~v~w~-~~l~~~~~~~~iiiaNE~lDAlPv 164 (362) |-|.+|.-+.+.. -.+..-+..|+...+.-+++..+.+ ++|... .+..+.+.....|+|-|.|+.+|- T Consensus 82 GwG~~a~~~a~~~---------g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~~~~~d~~~~~~~fD~ivSie~~EHv~~ 152 (302) T 3hem_A 82 GWGSTMRHAVAEY---------DVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEFDEPVDRIVSLGAFEHFAD 152 (302) T ss_dssp TTSHHHHHHHHHH---------CCEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGCCCCCSEEEEESCGGGTTC T ss_pred CCCHHHHHHHHHC---------CCEEEEEECCHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCEEEEEHHHHHHHH T ss_conf 8539999999986---------9838998377889999999998740021233444043234788675531156887312 Q ss_pred EEEEEECCCCEEEEEEEEECCCEEECCCCCCCCCCCCCCCCCCCCCEECCCHHHHHHHHHHHHHHHHCCEEEEEECCCCC Q ss_conf 58999156646899899607953522576434322346331656841127934789999999976205705999624336 Q gi|254780410|r 165 KQFVMTEHGIRERMIDIDQHDSLVFNIGDHEIKSNFLTCSDYFLGAIFENSPCRDREMQSISDRLACDGGTAIVIDYGYL 244 (362) Q Consensus 165 ~~~~~~~~~w~E~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~E~~~~~~~~~~~i~~~l~~~~G~~L~iDYGy~ 244 (362) . ...........+++.+.+.|+. +|.+++=+.+.. T Consensus 153 -----------------------------------------~---~~~~~~~~~~~~f~~i~~~LkP-gG~~~l~~i~~~ 187 (302) T 3hem_A 153 -----------------------------------------G---AGDAGFERYDTFFKKFYNLTPD-DGRMLLHTITIP 187 (302) T ss_dssp -----------------------------------------C---SSCCCTTHHHHHHHHHHHSSCT-TCEEEEEEEECC T ss_pred -----------------------------------------H---HCCHHHHHHHHHHHHHHHHCCC-CCEEEEEEEECC T ss_conf -----------------------------------------2---1012688999999999985699-874999999457 Q ss_pred CCCC----C-CEEEEECCC-CCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEECCE Q ss_conf 8588----8-807764057-67670001000345312688999999996898363323 Q gi|254780410|r 245 QSRV----G-DTLQAVKGH-TYVSPLVNPGQADLSSHVDFQRLSSIAILYKLYINGLT 296 (362) Q Consensus 245 ~~r~----~-gTLr~y~~H-~~~dpl~~pG~~DITahVnFs~L~~~a~~~g~~~~g~~ 296 (362) .... + .+-..+.+. ....-...||.. +. ..+.+...++++|+++.... T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~fi~kyiFpgg~-lp---s~~~~~~~~~~~gf~v~~~~ 241 (302) T 3hem_A 188 DKEEAQELGLTSPMSLLRFIKFILTEIFPGGR-LP---RISQVDYYSSNAGWKVERYH 241 (302) T ss_dssp CHHHHHHHTCCCCHHHHHHHHHHHHHTCTTCC-CC---CHHHHHHHHHHHTCEEEEEE T ss_pred CCHHHHHCCCCCHHHHHCCCHHHHHHCCCCCC-CC---CHHHHHHHHCCCCEEEEEEE T ss_conf 82121103678867753332156520368667-89---78999865223866999999 No 121 >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* Probab=92.53 E-value=0.56 Score=25.24 Aligned_cols=173 Identities=12% Similarity=0.095 Sum_probs=87.4 Q ss_pred HHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHCC--CCH Q ss_conf 999999999999983888762141007864689888799997418564301210236369789999986411102--310 Q gi|254780410|r 60 GEMLAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASYG--DKI 137 (362) Q Consensus 60 g~~ia~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~~--~~v 137 (362) .++-.+-+..+.+.++....-+|+|+|.|-|.+|.-+.+. .-.+..-+..|+...+.-+++..+.+ +++ T Consensus 46 ~eAQ~~k~~~l~~~l~l~~G~~VLDiGCG~G~~a~~~A~~---------~g~~v~git~s~~q~~~a~~~~~~~~~~~~~ 116 (287) T 1kpg_A 46 QEAQIAKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEK---------YDVNVVGLTLSKNQANHVQQLVANSENLRSK 116 (287) T ss_dssp HHHHHHHHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHH---------HCCEEEEEESCHHHHHHHHHHHHTCCCCSCE T ss_pred HHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHH---------CCCCEEEEECCHHHHHHHHHHHHHHCCCCHH T ss_conf 9999999999999719999998999688525999999996---------7984699968999999999998761454015 Q ss_pred HCC-CCHHHCCCCCEEEEEECCCCCCCEEEEEEECCCCEEEEEEEEECCCEEECCCCCCCCCCCCCCCCCCCCCEECCCH Q ss_conf 110-4344445695699981228875235899915664689989960795352257643432234633165684112793 Q gi|254780410|r 138 NWY-TSLADVPLGFTFLVANEFFDSLPIKQFVMTEHGIRERMIDIDQHDSLVFNIGDHEIKSNFLTCSDYFLGAIFENSP 216 (362) Q Consensus 138 ~w~-~~l~~~~~~~~iiiaNE~lDAlPv~~~~~~~~~w~E~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~E~~~ 216 (362) .+. .+..+.+....-|+|-|.|..+| .. T Consensus 117 ~~~~~d~~~~~~~fD~i~si~~~eh~~---------------------------------------------------~~ 145 (287) T 1kpg_A 117 RVLLAGWEQFDEPVDRIVSIGAFEHFG---------------------------------------------------HE 145 (287) T ss_dssp EEEESCGGGCCCCCSEEEEESCGGGTC---------------------------------------------------TT T ss_pred HHHHHHHHHCCCCCCCEEEEHHHHHCC---------------------------------------------------HH T ss_conf 788743664137764055532277507---------------------------------------------------47 Q ss_pred HHHHHHHHHHHHHHHCCEEEEEECCCCCCC---CCCCEEEEECCCCCCC---CCCCCCCCCCCCCCCHHHHHHHHHHCCC Q ss_conf 478999999997620570599962433685---8888077640576767---0001000345312688999999996898 Q gi|254780410|r 217 CRDREMQSISDRLACDGGTAIVIDYGYLQS---RVGDTLQAVKGHTYVS---PLVNPGQADLSSHVDFQRLSSIAILYKL 290 (362) Q Consensus 217 ~~~~~~~~i~~~l~~~~G~~L~iDYGy~~~---r~~gTLr~y~~H~~~d---pl~~pG~~DITahVnFs~L~~~a~~~g~ 290 (362) ....+++.+...|+. +|.+++-+-+...+ ...++.......+..+ -...||. .+.+ ...+...++++|+ T Consensus 146 ~~~~~~~~~~r~Lkp-gG~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~fi~k~ifpgg-~lps---l~~~~~~~~~aGf 220 (287) T 1kpg_A 146 RYDAFFSLAHRLLPA-DGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGG-RLPS---IPMVQECASANGF 220 (287) T ss_dssp THHHHHHHHHHHSCT-TCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTC-CCCC---HHHHHHHHHTTTC T ss_pred HHHHHHHHHHHHCCC-CCEEEEEEEECCCCHHHHHCCCCCCHHHHHHHHHHHHHCCCCC-CCCC---HHHHHHHHHHCCC T ss_conf 799999999974699-9729999997468344432157643344215456632216888-7897---6999999986286 Q ss_pred EEECCEE Q ss_conf 3633233 Q gi|254780410|r 291 YINGLTT 297 (362) Q Consensus 291 ~~~g~~s 297 (362) ++....+ T Consensus 221 ~v~~~~~ 227 (287) T 1kpg_A 221 TVTRVQS 227 (287) T ss_dssp EEEEEEE T ss_pred EEEEECC T ss_conf 8865314 No 122 >3hvi_A Catechol O-methyltransferase; neurotransmitter degradation, alternative initiation, catecholamine metabolism, cell membrane, cytoplasm; HET: 619; 1.20A {Rattus norvegicus} PDB: 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 2zlb_A 2zth_A* 2zvj_A* 3a7d_A* 3bwm_A* 3bwy_A* 3a7e_A* Probab=92.52 E-value=0.27 Score=27.42 Aligned_cols=73 Identities=19% Similarity=0.302 Sum_probs=48.6 Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHH Q ss_conf 67117999999999999999838887621410078646898887999974185643012102363697899999864111 Q gi|254780410|r 53 PEISQIFGEMLAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLAS 132 (362) Q Consensus 53 p~is~~Fg~~ia~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~ 132 (362) +.++|.=|++|...+.. ..| -+|+|+|.|.|.-+.-+.+.+ .+ .-+++.+|.++...+..++.+.. T Consensus 40 ~~i~~~~g~~L~~lv~~-----~kp--k~iLEiGt~~G~Stl~la~al---~~----~g~v~~id~~~~~~~~ar~~~~~ 105 (221) T 3hvi_A 40 MNVGDAKGQIMDAVIRE-----YSP--SLVLELGAYCGYSAVRMARLL---QP----GARLLTMEMNPDYAAITQQMLNF 105 (221) T ss_dssp CCCHHHHHHHHHHHHHH-----HCC--SEEEEECCTTSHHHHHHHTTC---CT----TCEEEEECCCHHHHHHHHHHHHH T ss_pred CCCCHHHHHHHHHHHHH-----CCC--CEEEEEECCCHHHHHHHHHHC---CC----CCEEEEEECCCHHHHHHHHHHHH T ss_conf 65089999999999986-----199--999997147429999999857---99----97899998884125899999997 Q ss_pred CC--CCHHC Q ss_conf 02--31011 Q gi|254780410|r 133 YG--DKINW 139 (362) Q Consensus 133 ~~--~~v~w 139 (362) .+ ++|.. T Consensus 106 agl~~~I~l 114 (221) T 3hvi_A 106 AGLQDKVTI 114 (221) T ss_dssp HTCTTTEEE T ss_pred CCCCCCEEE T ss_conf 599774158 No 123 >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* Probab=92.38 E-value=0.5 Score=25.60 Aligned_cols=114 Identities=19% Similarity=0.342 Sum_probs=59.1 Q ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHCCCCHHCCCCHHHCCCCCEEEE Q ss_conf 88876214100786468988879999741856430121023636978999998641110231011043444456956999 Q gi|254780410|r 75 GFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASYGDKINWYTSLADVPLGFTFLV 154 (362) Q Consensus 75 ~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~~~~v~w~~~l~~~~~~~~iii 154 (362) .....-.||++|+|.|.++..+++. .|+ ++...++..+.+... +++++..+ +..... +. T Consensus 180 ~~~~~~~vlDvGgG~G~~~~~l~~~----~p~----~~~~~~D~p~~~~~a-~~~~~~~~-----------l~~ri~-~~ 238 (360) T 1tw3_A 180 DWTNVRHVLDVGGGKGGFAAAIARR----APH----VSATVLEMAGTVDTA-RSYLKDEG-----------LSDRVD-VV 238 (360) T ss_dssp CCTTCSEEEEETCTTSHHHHHHHHH----CTT----CEEEEEECTTHHHHH-HHHHHHTT-----------CTTTEE-EE T ss_pred CCCCCCEEEECCCCCCHHHHHHHHH----CCC----EEEEEEECHHHHHHH-HHHHHHCC-----------CCCCCE-EE T ss_conf 9645757986389986889999975----894----489998884147999-99998628-----------874343-51 Q ss_pred EECCCCCCCEEEEEEECCCCEEEEEEEEECCCEEECCCCCCCCCCCCCCCCCCCCCEECCCHHHHHHHHHHHHHHHHCCE Q ss_conf 81228875235899915664689989960795352257643432234633165684112793478999999997620570 Q gi|254780410|r 155 ANEFFDSLPIKQFVMTEHGIRERMIDIDQHDSLVFNIGDHEIKSNFLTCSDYFLGAIFENSPCRDREMQSISDRLACDGG 234 (362) Q Consensus 155 aNE~lDAlPv~~~~~~~~~w~E~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~E~~~~~~~~~~~i~~~l~~~~G 234 (362) +--|||..|.. + -.++ + .+ + + .++.+ ......++.+.+.++. +| T Consensus 239 ~~d~~~~~p~~-~--------D~v~-~-~~-----v---------l---h~~~d-------~~~~~iL~~~~~aL~p-gg 282 (360) T 1tw3_A 239 EGDFFEPLPRK-A--------DAII-L-SF-----V---------L---LNWPD-------HDAVRILTRCAEALEP-GG 282 (360) T ss_dssp ECCTTSCCSSC-E--------EEEE-E-ES-----C---------G---GGSCH-------HHHHHHHHHHHHTEEE-EE T ss_pred CCCHHHCCCCC-C--------CEEE-E-EE-----E---------E---ECCCH-------HHHHHHHHHHHHHHCC-CC T ss_conf 37675427876-7--------4898-7-34-----7---------7---53987-------9999999999997199-83 Q ss_pred EEEEECCCCCC Q ss_conf 59996243368 Q gi|254780410|r 235 TAIVIDYGYLQ 245 (362) Q Consensus 235 ~~L~iDYGy~~ 245 (362) .++++|+-..+ T Consensus 283 ~lli~e~~~~~ 293 (360) T 1tw3_A 283 RILIHERDDLH 293 (360) T ss_dssp EEEEEECCBCG T ss_pred EEEEEECCCCC T ss_conf 89999724689 No 124 >1nw3_A Histone methyltransferase DOT1L; HDOT1, histone lysine methyltransferase,; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.31 Probab=92.34 E-value=0.093 Score=30.59 Aligned_cols=72 Identities=15% Similarity=0.195 Sum_probs=47.2 Q ss_pred HHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHCCCCHH Q ss_conf 99999999999999838887621410078646898887999974185643012102363697899999864111023101 Q gi|254780410|r 59 FGEMLAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASYGDKIN 138 (362) Q Consensus 59 Fg~~ia~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~~~~v~ 138 (362) +|++-...+..+.+.++....-.++++|.|.|.++..+.... ..-..+-||+|+.+.+.-++....+...+. T Consensus 136 ~~e~~~~~~~~i~~~~~l~~~~~~~DiG~G~G~~~~~~a~~~--------~~~~~~Giei~~~~~~~A~~~~~~~~~~~~ 207 (416) T 1nw3_A 136 YGETSFDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAAT--------NCKHHYGVEKADIPAKYAETMDREFRKWMK 207 (416) T ss_dssp CCCCCHHHHHHHHHHSCCCTTCEEEEETCTTSHHHHHHHHHC--------CCSEEEEEECSHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHC--------CCCEEEEEECCHHHHHHHHHHHHHHHHHHH T ss_conf 324409999999997089999889966888888999999976--------998899997999999999999999988777 No 125 >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 Probab=92.29 E-value=0.35 Score=26.63 Aligned_cols=57 Identities=14% Similarity=-0.034 Sum_probs=43.0 Q ss_pred HHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHC Q ss_conf 9999998388876214100786468988879999741856430121023636978999998641110 Q gi|254780410|r 67 LICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASY 133 (362) Q Consensus 67 ~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~ 133 (362) +.+.|..++.+..-+|+|+|.|.|.++.-+.+. -.+++-++.|+...+.-+++.... T Consensus 11 ~~~~~~~l~~~~g~rVLD~GCG~G~~~~~La~~----------g~~v~gvD~S~~~i~~a~~~~~~~ 67 (203) T 1pjz_A 11 LQQYWSSLNVVPGARVLVPLCGKSQDMSWLSGQ----------GYHVVGAELSEAAVERYFTERGEQ 67 (203) T ss_dssp HHHHHHHHCCCTTCEEEETTTCCSHHHHHHHHH----------CCEEEEEEECHHHHHHHHHHHCSC T ss_pred HHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHC----------CCEEEEECCCHHHHHHHHHHHCCC T ss_conf 999999649999997999737898889999967----------987788526599999999972345 No 126 >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase- like protein, methyltransferase domain; 1.85A {Lactobacillus casei atcc 334} Probab=92.27 E-value=0.61 Score=25.03 Aligned_cols=173 Identities=11% Similarity=0.024 Sum_probs=84.2 Q ss_pred HHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHH------HHHHHHHHHHHC--CCCHHC Q ss_conf 999998388876214100786468988879999741856430121023636978------999998641110--231011 Q gi|254780410|r 68 ICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSER------LTLIQKKQLASY--GDKINW 139 (362) Q Consensus 68 ~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~------l~~~Q~~~l~~~--~~~v~w 139 (362) ..+.+.++.+..-.|+|+|.|.|.++..+.+.+ .| ..+++-|+.|+. +.+.-+++.... .+++.+ T Consensus 33 ~~ll~~~~i~pG~rVLDiGCG~G~~t~~la~~~---g~----~~~V~gvD~s~~~~~~~~~l~~A~~~~~~~~~~~~i~~ 105 (275) T 3bkx_A 33 LAIAEAWQVKPGEKILEIGCGQGDLSAVLADQV---GS----SGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTV 105 (275) T ss_dssp HHHHHHHTCCTTCEEEEESCTTSHHHHHHHHHH---CT----TCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEE T ss_pred HHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHH---CC----CCCEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCE T ss_conf 999986797986989996653885789999983---87----77523476777776666899999999885577774010 Q ss_pred CCCHHHCCCCCEEEEEE-CCCCCCCEEEEEEECCCCEEEEEEEEECCCEEECCCCCCCCCCCCCCCCCCCCCEECCCHHH Q ss_conf 04344445695699981-22887523589991566468998996079535225764343223463316568411279347 Q gi|254780410|r 140 YTSLADVPLGFTFLVAN-EFFDSLPIKQFVMTEHGIRERMIDIDQHDSLVFNIGDHEIKSNFLTCSDYFLGAIFENSPCR 218 (362) Q Consensus 140 ~~~l~~~~~~~~iiiaN-E~lDAlPv~~~~~~~~~w~E~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~E~~~~~ 218 (362) ..++ +-.+.+|+. ++.+-.+. . ...+++.+.. T Consensus 106 -------------~~~d~~~~~~lp~~------------------~~sFD~V~-----------~-----~~~l~~~~d~ 138 (275) T 3bkx_A 106 -------------HFNTNLSDDLGPIA------------------DQHFDRVV-----------L-----AHSLWYFASA 138 (275) T ss_dssp -------------ECSCCTTTCCGGGT------------------TCCCSEEE-----------E-----ESCGGGSSCH T ss_pred -------------EHHHHHHHCCCCCC------------------CCCCCEEE-----------E-----EEEEECCCCH T ss_conf -------------20015440247644------------------57626897-----------8-----0163328999 Q ss_pred HHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCEE--EEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEECC Q ss_conf 8999999997620570599962433685888807--7640576767000100034531268899999999689836332 Q gi|254780410|r 219 DREMQSISDRLACDGGTAIVIDYGYLQSRVGDTL--QAVKGHTYVSPLVNPGQADLSSHVDFQRLSSIAILYKLYINGL 295 (362) Q Consensus 219 ~~~~~~i~~~l~~~~G~~L~iDYGy~~~r~~gTL--r~y~~H~~~dpl~~pG~~DITahVnFs~L~~~a~~~g~~~~g~ 295 (362) ...++.+...++ .+|.+++.+|.........+- +...-+.........+..+......-..+.+.+.++|+.+... T Consensus 139 ~~~l~~~~rvLk-pGG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~ 216 (275) T 3bkx_A 139 NALALLFKNMAA-VCDHVDVAEWSMQPTALDQIGHLQAAMIQGLLYAIAPSDVANIRTLITPDTLAQIAHDNTWTYTAG 216 (275) T ss_dssp HHHHHHHHHHTT-TCSEEEEEEECSSCSSGGGHHHHHHHHHHHHHHHHSCCTTCSCCCCCCHHHHHHHHHHHTCEEEEC T ss_pred HHHHHHHHHHCC-CCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEE T ss_conf 999999999768-787899996268878834536788999987776505677676557899999999999869979899 No 127 >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S- adenosylmethionine-dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 Probab=92.11 E-value=0.3 Score=27.14 Aligned_cols=48 Identities=17% Similarity=0.367 Sum_probs=33.6 Q ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHH Q ss_conf 888762141007864689888799997418564301210236369789999986411 Q gi|254780410|r 75 GFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLA 131 (362) Q Consensus 75 ~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~ 131 (362) +...++ ++|+|.|+|..+..+.+ ..|+ ..++-||+|+.....-.++.. T Consensus 39 ~~~~p~-iLEIGcG~G~~~~~lA~----~~P~----~~~igiD~~~~~v~~a~~~~~ 86 (214) T 1yzh_A 39 GNDNPI-HVEVGSGKGAFVSGMAK----QNPD----INYIGIDIQKSVLSYALDKVL 86 (214) T ss_dssp TSCCCE-EEEESCTTSHHHHHHHH----HCTT----SEEEEEESCHHHHHHHHHHHH T ss_pred CCCCCC-EEEEEEECCHHHHHHHH----HCCC----CCEEEEECCHHHHHHHHHHHH T ss_conf 999971-89994108699999999----7899----977974077888999999999 No 128 >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 Probab=92.00 E-value=0.3 Score=27.16 Aligned_cols=48 Identities=15% Similarity=0.309 Sum_probs=33.6 Q ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHH Q ss_conf 887621410078646898887999974185643012102363697899999864111 Q gi|254780410|r 76 FPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLAS 132 (362) Q Consensus 76 ~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~ 132 (362) .+.+ .++|+|.|+|..+..+.. ..|+ .+++-+|+|+.....-.++... T Consensus 37 ~~~p-~vLEIGcG~G~~~~~lA~----~~p~----~~~iGiD~~~~~i~~a~~~~~~ 84 (213) T 2fca_A 37 NDNP-IHIEVGTGKGQFISGMAK----QNPD----INYIGIELFKSVIVTAVQKVKD 84 (213) T ss_dssp SCCC-EEEEECCTTSHHHHHHHH----HCTT----SEEEEECSCHHHHHHHHHHHHH T ss_pred CCCC-EEEEEECCCCHHHHHHHH----HCCC----CCEEEEECCHHHHHHHHHHHHH T ss_conf 9995-299980358899999998----6899----8289998359999999999998 No 129 >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175, PSI-2; HET: MSE; 1.70A {Agrobacterium tumefaciens str} Probab=91.80 E-value=0.59 Score=25.12 Aligned_cols=73 Identities=18% Similarity=0.375 Sum_probs=44.9 Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHH-----HCCCCHHCCC-CH------- Q ss_conf 8762141007864689888799997418564301210236369789999986411-----1023101104-34------- Q gi|254780410|r 77 PSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLA-----SYGDKINWYT-SL------- 143 (362) Q Consensus 77 p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~-----~~~~~v~w~~-~l------- 143 (362) ...-.|+|+|+|+|.+..-+... .| ..+++.||.++.+.+.-++++. .+.++++.+. ++ T Consensus 35 ~~~~rVLDlG~G~G~i~l~La~r----~~----~~~v~gvEi~~~~~~lAr~N~~ln~~~~~~~ri~~~~~Di~~~~~~~ 106 (260) T 2ozv_A 35 DRACRIADLGAGAGAAGMAVAAR----LE----KAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKAR 106 (260) T ss_dssp CSCEEEEECCSSSSHHHHHHHHH----CT----TEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHH T ss_pred CCCCEEEECCHHHHHHHHHHHHH----CC----CCEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCEEEECHHHCCCHHH T ss_conf 89899999543676999999985----89----98899998999999999999998654433235358963321322123 Q ss_pred --HHCC-CCCEEEEEEC Q ss_conf --4445-6956999812 Q gi|254780410|r 144 --ADVP-LGFTFLVANE 157 (362) Q Consensus 144 --~~~~-~~~~iiiaNE 157 (362) ..++ ....+|++|= T Consensus 107 ~~~~~~~~~fD~VvsNP 123 (260) T 2ozv_A 107 VEAGLPDEHFHHVIMNP 123 (260) T ss_dssp HHTTCCTTCEEEEEECC T ss_pred HHHHHCCCCCCEEEECC T ss_conf 44331367626798669 No 130 >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, coiled coil, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus dsm 4304} SCOP: c.66.1.3 Probab=91.76 E-value=0.25 Score=27.61 Aligned_cols=67 Identities=18% Similarity=0.196 Sum_probs=41.4 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHH Q ss_conf 76711799999999999999983888762141007864689888799997418564301210236369789999986411 Q gi|254780410|r 52 APEISQIFGEMLAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLA 131 (362) Q Consensus 52 sp~is~~Fg~~ia~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~ 131 (362) .|.-|.+ |..++.- ..+.....-.|+++|+|+|+++..+.+.. + ...++-||.|+...+.-+++.. T Consensus 37 ~p~rskl-----aa~i~~~-~~l~ikpg~~VLDlG~GtG~~~~~la~~~----~----~g~V~avD~s~~~i~~a~~~a~ 102 (210) T 1nt2_A 37 VPWRSKL-----AAMILKG-HRLKLRGDERVLYLGAASGTTVSHLADIV----D----EGIIYAVEYSAKPFEKLLELVR 102 (210) T ss_dssp CGGGCHH-----HHHHHTS-CCCCCCSSCEEEEETCTTSHHHHHHHHHT----T----TSEEEEECCCHHHHHHHHHHHH T ss_pred CCCHHHH-----HHHHHCC-CCCCCCCCCEEEEECCCCCHHHHHHHHHC----C----CCEEEEEECCHHHHHHHHHHHH T ss_conf 8625389-----9998687-76688998999995688888899999743----6----9859999699999999997786 Q ss_pred H Q ss_conf 1 Q gi|254780410|r 132 S 132 (362) Q Consensus 132 ~ 132 (362) . T Consensus 103 ~ 103 (210) T 1nt2_A 103 E 103 (210) T ss_dssp H T ss_pred H T ss_conf 4 No 131 >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5- methylpyrimidin-2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* Probab=91.73 E-value=0.076 Score=31.21 Aligned_cols=60 Identities=17% Similarity=0.214 Sum_probs=41.7 Q ss_pred CCCEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHH Q ss_conf 888645767117999999999999999838887621410078646898887999974185643012102363697899 Q gi|254780410|r 46 VGDFVTAPEISQIFGEMLAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLT 123 (362) Q Consensus 46 ~GDF~Tsp~is~~Fg~~ia~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~ 123 (362) -|-|||.++|..+. ++. +..++...|+|.++|+|.|...+++.+.. ..+++-+|+++... T Consensus 18 ~G~~yTP~~i~~~~--------~~~---l~~~~~~~IlDPacGsG~FL~~~~~~~~~-------~~~i~G~did~~~~ 77 (421) T 2ih2_A 18 LGRVETPPEVVDFM--------VSL---AEAPRGGRVLEPACAHGPFLRAFREAHGT-------AYRFVGVEIDPKAL 77 (421) T ss_dssp ---CCCCHHHHHHH--------HHH---CCCCTTCEEEEETCTTCHHHHHHHHHHCS-------CSEEEEEESCTTTC T ss_pred CCEECCCHHHHHHH--------HHH---CCCCCCCEEEECCCCHHHHHHHHHHHCCC-------CCEEEEEECCHHHH T ss_conf 98788919999999--------994---78999699996877646999999986776-------78699997989999 No 132 >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} Probab=91.57 E-value=0.72 Score=24.51 Aligned_cols=78 Identities=21% Similarity=0.219 Sum_probs=53.8 Q ss_pred CCCCEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCC-------HHHHHCCCEEEEE Q ss_conf 888864576711799999999999999983888762141007864689888799997418-------5643012102363 Q gi|254780410|r 45 AVGDFVTAPEISQIFGEMLAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLK-------PDFFSVLSIYMVE 117 (362) Q Consensus 45 ~~GDF~Tsp~is~~Fg~~ia~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~-------p~~~~~l~~~ivE 117 (362) +.|.|+|.++|..+.-+++ .|.+-.|++--.|+|.|.....+++.+.. .......+++=+| T Consensus 223 ~~G~ffTP~~Iv~lmv~ll------------~p~~~~I~DPacGsGgfLi~a~~~i~~~~~~~~~~~~~~~~~~~l~G~E 290 (544) T 3khk_A 223 QGGQYYTPKSIVTLIVEML------------EPYKGRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQE 290 (544) T ss_dssp CSTTTCCCHHHHHHHHHHH------------CCCSEEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECC T ss_pred CCCEECCCHHHHHHHHHCC------------CCCCCCEECCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHCEEECCC T ss_conf 4765548189999998623------------8998837037777617899999999982452222202222011061503 Q ss_pred CCHHHHHHHHHHHHHCC Q ss_conf 69789999986411102 Q gi|254780410|r 118 TSERLTLIQKKQLASYG 134 (362) Q Consensus 118 ~s~~l~~~Q~~~l~~~~ 134 (362) +++.....-+-++--++ T Consensus 291 i~~~~~~la~~nm~l~g 307 (544) T 3khk_A 291 SNPTTWKLAAMNMVIRG 307 (544) T ss_dssp CCHHHHHHHHHHHHHTT T ss_pred CCHHHHHHHHHHHHHCC T ss_conf 87799999998898618 No 133 >1vlm_A SAM-dependent methyltransferase; possible histamine N-methyltransferase, structural genomics, JCSG, protein structure initiative, PSI; 2.20A {Thermotoga maritima MSB8} SCOP: c.66.1.41 Probab=91.47 E-value=0.28 Score=27.32 Aligned_cols=34 Identities=38% Similarity=0.472 Sum_probs=24.9 Q ss_pred EEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHH Q ss_conf 141007864689888799997418564301210236369789999986 Q gi|254780410|r 81 RLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKK 128 (362) Q Consensus 81 ~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~ 128 (362) .|+|+|.|+|.++..+ .+.+-||+|+.+.+.-++ T Consensus 50 ~vLDiGcGtG~~~~~l--------------~~~~giD~s~~~i~~a~~ 83 (219) T 1vlm_A 50 RGVEIGVGTGRFAVPL--------------KIKIGVEPSERMAEIARK 83 (219) T ss_dssp CEEEETCTTSTTHHHH--------------TCCEEEESCHHHHHHHHH T ss_pred EEEEECCCCCHHHHHH--------------HHEEEEECCHHHHHHHHH T ss_conf 0999858677999977--------------586999499999999998 No 134 >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, S-adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum tls} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* Probab=91.38 E-value=0.75 Score=24.38 Aligned_cols=72 Identities=18% Similarity=0.271 Sum_probs=41.0 Q ss_pred ECCCCCHHHHHHHH---HHHH-HHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHH Q ss_conf 57671179999999---9999-9999838887621410078646898887999974185643012102363697899999 Q gi|254780410|r 51 TAPEISQIFGEMLA---IFLI-CAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQ 126 (362) Q Consensus 51 Tsp~is~~Fg~~ia---~~~~-~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q 126 (362) ..++-...|.+..+ +... .+.+....+..-+|+|+|+|+|.++..+++. .|+ ++.+.++.+. ..+.- T Consensus 159 ~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~vlDiG~G~G~~~~~l~~~----~p~----~~~~~~Dlp~-~~~~a 229 (359) T 1x19_A 159 VTREDNLYFEEIHRSNAKFAIQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKH----FPE----LDSTILNLPG-AIDLV 229 (359) T ss_dssp CSHHHHHHHHHHHHTTCHHHHHHHHHHCCCTTCCEEEEESCTTCHHHHHHHHH----CTT----CEEEEEECGG-GHHHH T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHH----CCC----EEEEEECCHH-HHHHH T ss_conf 18689999999999758999999998478767877997679897999999983----992----2899816688-89999 Q ss_pred HHHHH Q ss_conf 86411 Q gi|254780410|r 127 KKQLA 131 (362) Q Consensus 127 ~~~l~ 131 (362) ++++. T Consensus 230 ~~~~~ 234 (359) T 1x19_A 230 NENAA 234 (359) T ss_dssp HHHHH T ss_pred HHHHH T ss_conf 98667 No 135 >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer, dimer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 Probab=91.31 E-value=0.76 Score=24.34 Aligned_cols=74 Identities=19% Similarity=0.244 Sum_probs=43.7 Q ss_pred CEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHH--CCCCHHCC-CCHHHCC---CCCEEE Q ss_conf 21410078646898887999974185643012102363697899999864111--02310110-4344445---695699 Q gi|254780410|r 80 VRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLAS--YGDKINWY-TSLADVP---LGFTFL 153 (362) Q Consensus 80 ~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~--~~~~v~w~-~~l~~~~---~~~~ii 153 (362) -.|+++|+|+|.|+.-..+ . ...+.+.+|.|+..... ++.+.. ..++|..+ .+..+++ ....+| T Consensus 40 ~~VLDiGcGtG~ls~~aa~----~-----Ga~~V~a~d~s~~~~~a-~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~D~v 109 (328) T 1g6q_1 40 KIVLDVGCGTGILSMFAAK----H-----GAKHVIGVDMSSIIEMA-KELVELNGFSDKITLLRGKLEDVHLPFPKVDII 109 (328) T ss_dssp CEEEEETCTTSHHHHHHHH----T-----CCSEEEEEESSTHHHHH-HHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEE T ss_pred CEEEEECCCCCHHHHHHHH----C-----CCCEEEEEECHHHHHHH-HHHHHHCCCCCEEEEEEEEEECCCCCCCCCCEE T ss_conf 9999978997799999997----1-----99989999597999999-999987387623899971210055776664299 Q ss_pred EEECCCCCCC Q ss_conf 9812288752 Q gi|254780410|r 154 VANEFFDSLP 163 (362) Q Consensus 154 iaNE~lDAlP 163 (362) +++.+...++ T Consensus 110 vse~~~~~~~ 119 (328) T 1g6q_1 110 ISEWMGYFLL 119 (328) T ss_dssp EECCCBTTBS T ss_pred EEEECCEECC T ss_conf 9973320304 No 136 >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural genomics, joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} Probab=91.18 E-value=0.58 Score=25.18 Aligned_cols=44 Identities=14% Similarity=0.122 Sum_probs=33.2 Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHH Q ss_conf 762141007864689888799997418564301210236369789999986411 Q gi|254780410|r 78 SCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLA 131 (362) Q Consensus 78 ~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~ 131 (362) ....|+|+|.|.|.++.-+.+. . .+++-||.|+.+.+.-+++.. T Consensus 56 ~~~~vLDvGCG~G~~~~~la~~----g------~~v~gvD~s~~~i~~Ar~~~~ 99 (245) T 3ggd_A 56 PELPLIDFACGNGTQTKFLSQF----F------PRVIGLDVSKSALEIAAKENT 99 (245) T ss_dssp TTSCEEEETCTTSHHHHHHHHH----S------SCEEEEESCHHHHHHHHHHSC T ss_pred CCCEEEEECCCCCHHHHHHHCC----C------CEEEEEECCHHHHHHHHHHCC T ss_conf 9985899758797879997637----8------459985099999999998674 No 137 >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA processing, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} Probab=90.48 E-value=0.47 Score=25.77 Aligned_cols=50 Identities=18% Similarity=0.328 Sum_probs=34.1 Q ss_pred HHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHH Q ss_conf 9838887621410078646898887999974185643012102363697899999864 Q gi|254780410|r 72 EQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQ 129 (362) Q Consensus 72 ~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~ 129 (362) .......+..|+|+|.|+|..+..+ .+..|+ ..++=+|+++.....-..+ T Consensus 40 ~~~~~~~~~~iLeIGcG~G~~l~~l----A~~~P~----~~~iGiei~~~~~~~~~~~ 89 (235) T 3ckk_A 40 KEKRAQAQVEFADIGCGYGGLLVEL----SPLFPD----TLILGLEIRVKVSDYVQDR 89 (235) T ss_dssp ------CCEEEEEETCTTCHHHHHH----GGGSTT----SEEEEEESCHHHHHHHHHH T ss_pred HHHCCCCCCEEEEEECCCCHHHHHH----HHHCCC----CCEEEEEECHHHHHHHHHH T ss_conf 6644668987999822686999999----986868----7289886135899999989 No 138 >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, alternative splicing; 2.55A {Rattus norvegicus} Probab=90.43 E-value=0.92 Score=23.80 Aligned_cols=73 Identities=19% Similarity=0.273 Sum_probs=43.1 Q ss_pred CCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHH--HCCCCHHCCC-CHHHC--CCCCEEE Q ss_conf 62141007864689888799997418564301210236369789999986411--1023101104-34444--5695699 Q gi|254780410|r 79 CVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLA--SYGDKINWYT-SLADV--PLGFTFL 153 (362) Q Consensus 79 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~--~~~~~v~w~~-~l~~~--~~~~~ii 153 (362) .-.|+++|+|+|-|+.-..+ . ..-+.+.||.|+..... ++... .+.++|..+. +..++ |....+| T Consensus 159 ~kvVLDvGcGtGiLs~~AA~----a-----GA~kV~avE~S~~a~~A-~~~v~~Ngl~d~I~vi~g~~e~l~lpe~vDvI 228 (480) T 3b3j_A 159 DKIVLDVGCGSGILSFFAAQ----A-----GARKIYAVEASTMAQHA-EVLVKSNNLTDRIVVIPGKVEEVSLPEQVDII 228 (480) T ss_dssp TCEEEEESCSTTHHHHHHHH----T-----TCSEEEEEECHHHHHHH-HHHHHHTTCTTTEEEEESCTTTCCCSSCEEEE T ss_pred CCEEEEECCCCCHHHHHHHH----C-----CCCEEEEECCHHHHHHH-HHHHHHCCCCCCEEEEECCHHHCCCCCCCCEE T ss_conf 89899968883699999998----5-----99889999095999999-99999749986168997527656767666789 Q ss_pred EEECCCCCC Q ss_conf 981228875 Q gi|254780410|r 154 VANEFFDSL 162 (362) Q Consensus 154 iaNE~lDAl 162 (362) ++ |+++.+ T Consensus 229 VS-E~mg~~ 236 (480) T 3b3j_A 229 IS-EPMGYM 236 (480) T ss_dssp EC-CCCHHH T ss_pred EE-ECCCCC T ss_conf 99-832200 No 139 >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} Probab=90.22 E-value=0.65 Score=24.83 Aligned_cols=55 Identities=20% Similarity=0.208 Sum_probs=39.0 Q ss_pred HHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHCC Q ss_conf 983888762141007864689888799997418564301210236369789999986411102 Q gi|254780410|r 72 EQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASYG 134 (362) Q Consensus 72 ~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~~ 134 (362) ..++-...-.|+|+|+|+|.++..+.+ ..| ..+.+-+|.|+...+..+++..... T Consensus 19 ~~L~~~pg~~vLDiGcG~G~~a~~~a~----~~~----~~~V~avD~~~~~~~~a~~~~~~~~ 73 (178) T 3hm2_A 19 SALAPKPHETLWDIGGGSGSIAIEWLR----STP----QTTAVCFEISEERRERILSNAINLG 73 (178) T ss_dssp HHHCCCTTEEEEEESTTTTHHHHHHHT----TSS----SEEEEEECSCHHHHHHHHHHHHTTT T ss_pred HHCCCCCCCEEEEECCCCCHHHHHHHH----HCC----CCEEEEEECCHHHHHHHHHHHHHHC T ss_conf 855999979999976688889999999----689----7769885089999999999999819 No 140 >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* Probab=90.10 E-value=0.97 Score=23.62 Aligned_cols=135 Identities=19% Similarity=0.276 Sum_probs=70.8 Q ss_pred CCCCCHHHHHHHHHH---HH-HHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHH Q ss_conf 767117999999999---99-99998388876214100786468988879999741856430121023636978999998 Q gi|254780410|r 52 APEISQIFGEMLAIF---LI-CAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQK 127 (362) Q Consensus 52 sp~is~~Fg~~ia~~---~~-~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~ 127 (362) .|+....|...++.. .. .+......+..-.++++|+|.|.++..+++. .|+ ++.++++.++. .+.-+ T Consensus 172 ~p~~~~~f~~~m~~~~~~~~~~~~~~~d~~~~~~vlDvGgG~G~~~~~l~~~----~P~----l~~~~~Dlp~v-~~~a~ 242 (369) T 3gwz_A 172 DPKARELFNRAMGSVSLTEAGQVAAAYDFSGAATAVDIGGGRGSLMAAVLDA----FPG----LRGTLLERPPV-AEEAR 242 (369) T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHSCCTTCSEEEEETCTTSHHHHHHHHH----CTT----CEEEEEECHHH-HHHHH T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHH----CCC----CEEEEEECHHH-HHHHH T ss_conf 9999999999887789988999986368767867988578888899999997----899----86999989688-89999 Q ss_pred HHHHHCCCCHHCCCCHHHCCCCCEEEEEECCCCCCCEEEEEEECCCCEEEEEEEEECCCEEECCCCCCCCCCCCCCCCCC Q ss_conf 64111023101104344445695699981228875235899915664689989960795352257643432234633165 Q gi|254780410|r 128 KQLASYGDKINWYTSLADVPLGFTFLVANEFFDSLPIKQFVMTEHGIRERMIDIDQHDSLVFNIGDHEIKSNFLTCSDYF 207 (362) Q Consensus 128 ~~l~~~~~~v~w~~~l~~~~~~~~iiiaNE~lDAlPv~~~~~~~~~w~E~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (362) +++... ..... .-+.+..+||..|.. + -.++ +. + + + .++. T Consensus 243 ~~~~~~-----------~~~~r-i~~~~~d~f~~~p~~-~--------D~~~-l~-~-----v---------L---h~~~ 282 (369) T 3gwz_A 243 ELLTGR-----------GLADR-CEILPGDFFETIPDG-A--------DVYL-IK-H-----V---------L---HDWD 282 (369) T ss_dssp HHHHHT-----------TCTTT-EEEEECCTTTCCCSS-C--------SEEE-EE-S-----C---------G---GGSC T ss_pred HHHHHC-----------CCCCC-EEEECCCCCCCCCCC-C--------EEEE-EE-C-----C---------C---CCCC T ss_conf 877751-----------77752-368526323358988-6--------0999-80-4-----3---------3---4688 Q ss_pred CCCEECCCHHHHHHHHHHHHHHHHCCEEEEEECCCC Q ss_conf 684112793478999999997620570599962433 Q gi|254780410|r 208 LGAIFENSPCRDREMQSISDRLACDGGTAIVIDYGY 243 (362) Q Consensus 208 ~g~~~E~~~~~~~~~~~i~~~l~~~~G~~L~iDYGy 243 (362) + ......++.+.+.++. +|.++++|+=. T Consensus 283 d-------~~~~~iL~~~~~aL~p-gG~lli~e~~~ 310 (369) T 3gwz_A 283 D-------DDVVRILRRIATAMKP-DSRLLVIDNLI 310 (369) T ss_dssp H-------HHHHHHHHHHHTTCCT-TCEEEEEEEBC T ss_pred H-------HHHHHHHHHHHHHCCC-CCEEEEEEECC T ss_conf 2-------8999999999996599-97899998346 No 141 >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Probab=90.10 E-value=0.97 Score=23.62 Aligned_cols=48 Identities=8% Similarity=-0.062 Sum_probs=34.0 Q ss_pred CCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHC Q ss_conf 6214100786468988879999741856430121023636978999998641110 Q gi|254780410|r 79 CVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASY 133 (362) Q Consensus 79 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~ 133 (362) .-.|+++|.|+|..+..+.. ...| ..+++-|+.|+.+.+.-+++.... T Consensus 119 g~~vLDvGcG~G~~~~~l~~---~~~p----~~~v~gvD~S~~~l~~A~~~~~~~ 166 (305) T 3ocj_A 119 GCVVASVPCGWMSELLALDY---SACP----GVQLVGIDYDPEALDGATRLAAGH 166 (305) T ss_dssp TCEEEETTCTTCHHHHTSCC---TTCT----TCEEEEEESCHHHHHHHHHHHTTS T ss_pred CCEEEEECCCCHHHHHHHHH---HHCC----CCEEEEEECCHHHHHHHHHHHHHH T ss_conf 59999944747699999999---7189----958999979888999997530220 No 142 >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} Probab=90.01 E-value=0.99 Score=23.57 Aligned_cols=109 Identities=16% Similarity=0.275 Sum_probs=61.6 Q ss_pred CHHHHHHHHHHHHHCCCCCHHHHHHHH------HCCCCC---CCCCCCC-CCCCCCCEEECCCCCHHHHHHHHHHHHHHH Q ss_conf 848999999999818980499999987------108987---8646898-888888864576711799999999999999 Q gi|254780410|r 2 ENKLIRKIVNLIKKNGQMTVDQYFALC------VADPEF---GYYSTCN-PFGAVGDFVTAPEISQIFGEMLAIFLICAW 71 (362) Q Consensus 2 ~~~L~~~i~~~I~~~G~i~f~~fM~~a------Ly~p~~---GYY~~~~-~~G~~GDF~Tsp~is~~Fg~~ia~~~~~~~ 71 (362) .+.=.+.+.+.|+.+| |.=.+-.+.- .|=|+. --|.-.. ++| .|-++.+|++ ...++ T Consensus 4 ~~~r~~~lv~qLr~~g-i~d~~v~~A~~~VpRe~Fvp~~~~~~aY~D~~l~i~-~~~~is~P~~-----------~A~~l 70 (210) T 3lbf_A 4 VSRRVQALLDQLRAQG-IQDEQVLNALAAVPREKFVDEAFEQKAWDNIALPIG-QGQTISQPYM-----------VARMT 70 (210) T ss_dssp CCHHHHHHHHHHHHTT-CCCHHHHHHHHHSCGGGGSCGGGGGGTTSSSCEECT-TSCEECCHHH-----------HHHHH T ss_pred HHHHHHHHHHHHHHCC-CCCHHHHHHHHCCCHHHCCCHHHHHCCCCCCCCCCC-CCCEECCCHH-----------HHHHH T ss_conf 6899999999999769-999999999975998884991576367667886588-9817544367-----------47678 Q ss_pred HHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHC Q ss_conf 98388876214100786468988879999741856430121023636978999998641110 Q gi|254780410|r 72 EQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASY 133 (362) Q Consensus 72 ~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~ 133 (362) +.+.....-.|+|+|+|+|.+++=+ -.+. -+.+.+|..+.+...-++++... T Consensus 71 ~~L~~~~g~~VLeIGsGtGY~tAll-a~l~---------~~v~~ve~~~~~~~~a~~~~~~~ 122 (210) T 3lbf_A 71 ELLELTPQSRVLEIGTGSGYQTAIL-AHLV---------QHVCSVERIKGLQWQARRRLKNL 122 (210) T ss_dssp HHTTCCTTCEEEEECCTTSHHHHHH-HHHS---------SEEEEEESCHHHHHHHHHHHHHT T ss_pred HHCCCCCCCEEEEECCCHHHHHHHH-HHHH---------CEECCCCCCHHHHHHHHHHHHHH T ss_conf 7565689987999678406999999-9862---------83254542228999999998862 No 143 >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis V583} SCOP: c.66.1.46 Probab=89.77 E-value=0.65 Score=24.82 Aligned_cols=83 Identities=13% Similarity=0.081 Sum_probs=50.0 Q ss_pred CCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCE Q ss_conf 78646898888888864576711799999999999999983888762141007864689888799997418564301210 Q gi|254780410|r 34 FGYYSTCNPFGAVGDFVTAPEISQIFGEMLAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSI 113 (362) Q Consensus 34 ~GYY~~~~~~G~~GDF~Tsp~is~~Fg~~ia~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~ 113 (362) .|-|..+.-.-..| -.|=|..+.+=..+ .+++.. ....-+|+++++|+|.++...+.. ..-+. T Consensus 8 ~G~~kg~~l~~~~~-~~~RPt~~~vreal-----fn~l~~--~~~~~~vLDlf~GsG~~~~ea~sr---------Ga~~v 70 (187) T 2fhp_A 8 SGEYGGRRLKALDG-DNTRPTTDKVKESI-----FNMIGP--YFDGGMALDLYSGSGGLAIEAVSR---------GMDKS 70 (187) T ss_dssp SSTTTTCBCCCCCC-CSSCCCCHHHHHHH-----HHHHCS--CCSSCEEEETTCTTCHHHHHHHHT---------TCSEE T ss_pred EECCCCCEECCCCC-CCCCCCCHHHHHHH-----HHHHHH--HCCCCEEEECCCCCCHHHHHHHHC---------CCCEE T ss_conf 53358978378998-99587818999999-----998651--159998999888737899999975---------88835 Q ss_pred EEEECCHHHHHHHHHHHHHC Q ss_conf 23636978999998641110 Q gi|254780410|r 114 YMVETSERLTLIQKKQLASY 133 (362) Q Consensus 114 ~ivE~s~~l~~~Q~~~l~~~ 133 (362) +.||.|+...+..++++... T Consensus 71 ~~Ve~~~~~~~~~~~N~~~~ 90 (187) T 2fhp_A 71 ICIEKNFAALKVIKENIAIT 90 (187) T ss_dssp EEEESCHHHHHHHHHHHHHH T ss_pred EEEEECHHHHHHHHHHHHHC T ss_conf 89994246776766555420 No 144 >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A Probab=89.75 E-value=0.46 Score=25.83 Aligned_cols=50 Identities=20% Similarity=0.103 Sum_probs=35.4 Q ss_pred CEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHCCCCHHC Q ss_conf 214100786468988879999741856430121023636978999998641110231011 Q gi|254780410|r 80 VRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASYGDKINW 139 (362) Q Consensus 80 ~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~~~~v~w 139 (362) -.|+|+|.|+|..+.-+.+ . -.+++-|+.|+...+.-+++.++.+.++.+ T Consensus 31 ~~vLDlGcG~G~~~~~la~----~------G~~V~~vD~s~~~l~~a~~~~~~~~~~~~~ 80 (202) T 2kw5_A 31 GKILCLAEGEGRNACFLAS----L------GYEVTAVDQSSVGLAKAKQLAQEKGVKITT 80 (202) T ss_dssp SEEEECCCSCTHHHHHHHT----T------TCEEEEECSSHHHHHHHHHHHHHHTCCEEE T ss_pred CCEEEECCCCCHHHHHHHH----C------CCCEEEEECCHHHHHHHHHHHHHHCCCEEE T ss_conf 9399983778999999998----6------991467777899999999988871995589 No 145 >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} Probab=89.72 E-value=0.58 Score=25.16 Aligned_cols=74 Identities=12% Similarity=0.172 Sum_probs=49.9 Q ss_pred CCCCEEECCCCCHHHHHHHHHHHHHHHHHC-CCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHH Q ss_conf 888864576711799999999999999983-8887621410078646898887999974185643012102363697899 Q gi|254780410|r 45 AVGDFVTAPEISQIFGEMLAIFLICAWEQH-GFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLT 123 (362) Q Consensus 45 ~~GDF~Tsp~is~~Fg~~ia~~~~~~~~~~-~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~ 123 (362) ..|.|+|-++|..+-.+++ ... .......|++-.+|+|.|.....+.+... ....++=.|.++... T Consensus 195 ~~Ge~~TP~~Iv~lmv~l~--------~~~~~~~~~~~I~DPacGsGgfL~~a~~~~~~~-----~~~~~~G~e~~~~~~ 261 (542) T 3lkd_A 195 KAGEFYTPQPVAKLMTQIA--------FLGREDKQGFTLYDATMGSGSLLLNAKRYSRQP-----QTVVYFGQELNTSTY 261 (542) T ss_dssp CCSSCCCCHHHHHHHHHHH--------HTTCTTCTTCEEEETTCTTSTTGGGHHHHCSCT-----TTCEEEEEESCHHHH T ss_pred CCCCCCCCHHHHHHHHHHC--------CCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHH-----CCEEEEEEECCHHHH T ss_conf 4771589889998578642--------556456789868327788455889888877500-----555787442667999 Q ss_pred HHHHHHHH Q ss_conf 99986411 Q gi|254780410|r 124 LIQKKQLA 131 (362) Q Consensus 124 ~~Q~~~l~ 131 (362) ..-+-++- T Consensus 262 ~la~~nl~ 269 (542) T 3lkd_A 262 NLARMNMI 269 (542) T ss_dssp HHHHHHHH T ss_pred HHHHHHHH T ss_conf 99999878 No 146 >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* Probab=89.67 E-value=1.1 Score=23.39 Aligned_cols=51 Identities=14% Similarity=0.177 Sum_probs=37.6 Q ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHCC Q ss_conf 88762141007864689888799997418564301210236369789999986411102 Q gi|254780410|r 76 FPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASYG 134 (362) Q Consensus 76 ~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~~ 134 (362) .|..-.|+++|.|+|.++..+++. . ...+.+.+|.|+...+.-++++...+ T Consensus 13 v~~g~~ilDiG~g~G~~~~~l~~~----~----~~~~v~avDi~~~~l~~a~~n~~~~~ 63 (225) T 3kr9_A 13 VSQGAILLDVGSDHAYLPIELVER----G----QIKSAIAGEVVEGPYQSAVKNVEAHG 63 (225) T ss_dssp SCTTEEEEEETCSTTHHHHHHHHT----T----SEEEEEEEESSHHHHHHHHHHHHHTT T ss_pred CCCCCEEEEECCCHHHHHHHHHHC----C----CCCEEEEEECCHHHHHHHHHHHHHCC T ss_conf 899898999618569999999980----9----99889971099999999999999829 No 147 >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* Probab=89.30 E-value=0.67 Score=24.75 Aligned_cols=58 Identities=19% Similarity=0.213 Sum_probs=41.1 Q ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHCCCCHHCCC Q ss_conf 8887621410078646898887999974185643012102363697899999864111023101104 Q gi|254780410|r 75 GFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASYGDKINWYT 141 (362) Q Consensus 75 ~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~~~~v~w~~ 141 (362) +..+.-.|+|+|.|.|.++.-++. + ...+++-++.|+.+.+.-++.+......+.|.. T Consensus 53 ~~~~g~~vLDlGCG~G~~~~~l~~------~---~~~~V~giD~S~~~i~~a~~~~~~~~~~~~~~~ 110 (265) T 2i62_A 53 GAVKGELLIDIGSGPTIYQLLSAC------E---SFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSP 110 (265) T ss_dssp SSCCEEEEEEESCTTCCGGGTTGG------G---TEEEEEEEESCHHHHHHHHHHHTTCTTCCCCHH T ss_pred CCCCCCEEEEECCCCCHHHHHHHH------H---CCCEEEEECCCHHHHHHHHHHHHHCCCCCCHHH T ss_conf 888898899967877676999997------2---199899956999999999999875477622132 No 148 >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* Probab=89.15 E-value=0.4 Score=26.28 Aligned_cols=102 Identities=12% Similarity=0.054 Sum_probs=53.8 Q ss_pred CEEECCCCCHHHHHHHHHHHHHHHHH-CCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHH Q ss_conf 86457671179999999999999998-38887621410078646898887999974185643012102363697899999 Q gi|254780410|r 48 DFVTAPEISQIFGEMLAIFLICAWEQ-HGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQ 126 (362) Q Consensus 48 DF~Tsp~is~~Fg~~ia~~~~~~~~~-~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q 126 (362) |+.++.+.+.- +.+. ++.++... .+.+.+-.|+++|.|.|.|+... .| ..+++-++.|+.+.+.- T Consensus 77 ~~~~~~h~~~~--e~~~-~~~~~~~~~~~~~~~~~VLDlGCG~G~l~~~~-------~~----~~~v~gvD~s~~~l~~a 142 (253) T 3frh_A 77 KKALSLHASTK--ERLA-ELDTLYDFIFSAETPRRVLDIACGLNPLALYE-------RG----IASVWGCDIHQGLGDVI 142 (253) T ss_dssp HHHHTTSHHHH--HHGG-GHHHHHHHHTSSCCCSEEEEETCTTTHHHHHH-------TT----CSEEEEEESBHHHHHHH T ss_pred HHHHCCCCCHH--HHHH-HHHHHHHHHHCCCCCCEEEEECCCCCHHHHHH-------CC----CCEEEEEECCHHHHHHH T ss_conf 87752687759--9999-99999999845899985999678888999997-------68----98389997979999999 Q ss_pred HHHHHHCCCCHHCC-CCHHHCCC--CCEEEEEECCCCCCC Q ss_conf 86411102310110-43444456--956999812288752 Q gi|254780410|r 127 KKQLASYGDKINWY-TSLADVPL--GFTFLVANEFFDSLP 163 (362) Q Consensus 127 ~~~l~~~~~~v~w~-~~l~~~~~--~~~iiiaNE~lDAlP 163 (362) ++++...+.++... .+..+.+. ...++++.+++--|| T Consensus 143 r~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~vl~~l~ 182 (253) T 3frh_A 143 TPFAREKDWDFTFALQDVLCAPPAEAGDLALIFKLLPLLE 182 (253) T ss_dssp HHHHHHTTCEEEEEECCTTTSCCCCBCSEEEEESCHHHHH T ss_pred HHHHHHCCCCCEEEECCHHHCCCCCCCCHHHHHCHHHHCC T ss_conf 9999982997048855622245776744105424486489 No 149 >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research, nysgxrc; 2.33A {Bacteroides vulgatus atcc 8482} Probab=89.01 E-value=1.2 Score=23.08 Aligned_cols=51 Identities=20% Similarity=0.261 Sum_probs=32.6 Q ss_pred HHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHH Q ss_conf 983888762141007864689888799997418564301210236369789999986411 Q gi|254780410|r 72 EQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLA 131 (362) Q Consensus 72 ~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~ 131 (362) +....+..-.||++|+|+|..+..+++. .|+ ++..+++.++.. ...+++.. T Consensus 173 ~~~~~~~~~~vLDiG~G~G~~~~~la~~----~p~----~~~~~~d~~~~~-~~~~~~~~ 223 (363) T 3dp7_A 173 EIVFSHHPKRLLDIGGNTGKWATQCVQY----NKE----VEVTIVDLPQQL-EMMRKQTA 223 (363) T ss_dssp HHHGGGCCSEEEEESCTTCHHHHHHHHH----STT----CEEEEEECHHHH-HHHHHHHT T ss_pred HHCCCCCCCEEEEECCCCHHHHHHHHHH----CCC----EEEEEECCCHHH-HHHHHHHH T ss_conf 7524458998999799952999999986----897----399997571167-99998876 No 150 >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} Probab=88.96 E-value=1.2 Score=23.05 Aligned_cols=145 Identities=11% Similarity=0.252 Sum_probs=74.1 Q ss_pred CCCEEECCCCCHHHHHHHHHH---HHHHHHHCC-CCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHH Q ss_conf 888645767117999999999---999999838-8876214100786468988879999741856430121023636978 Q gi|254780410|r 46 VGDFVTAPEISQIFGEMLAIF---LICAWEQHG-FPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSER 121 (362) Q Consensus 46 ~GDF~Tsp~is~~Fg~~ia~~---~~~~~~~~~-~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~ 121 (362) .+.|...|+....|....... ....+.... .+..-.|+++|+|.|.++..+++. .|+ ++..+++.++. T Consensus 143 ~~~~~~~~~~~~~f~~~m~~~~~~~~~~l~~~~~~~~~~~vlDvGgG~G~~~~~l~~~----~p~----~~~~~~Dlp~~ 214 (352) T 3mcz_A 143 ESRFAHDTRARDAFNDAMVRLSQPMVDVVSELGVFARARTVIDLAGGHGTYLAQVLRR----HPQ----LTGQIWDLPTT 214 (352) T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHHHHHHHTCGGGTTCCEEEEETCTTCHHHHHHHHH----CTT----CEEEEEECGGG T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHH----CCE----EEEEEEECHHH T ss_conf 4644469999999999999989999999997138777998999889887999999975----983----48999601999 Q ss_pred HHHHHHHHHHHCC--CCHHCCCCHHHCCCCCEEEEEECCCCCCCEEEEEEECCCCEEEEEEEEECCCEEECCCCCCCCCC Q ss_conf 9999986411102--31011043444456956999812288752358999156646899899607953522576434322 Q gi|254780410|r 122 LTLIQKKQLASYG--DKINWYTSLADVPLGFTFLVANEFFDSLPIKQFVMTEHGIRERMIDIDQHDSLVFNIGDHEIKSN 199 (362) Q Consensus 122 l~~~Q~~~l~~~~--~~v~w~~~l~~~~~~~~iiiaNE~lDAlPv~~~~~~~~~w~E~~V~~~~~~~~~~~~~~~~~~~~ 199 (362) + +.-++++.+.+ ++|. +++-.+|+..|.. ++-+-.++- . + . T Consensus 215 ~-~~a~~~~~~~~l~~rv~--------------~~~gd~~~~~~~~------~~~~D~v~~-~-~--------------v 257 (352) T 3mcz_A 215 R-DAARKTIHAHDLGGRVE--------------FFEKNLLDARNFE------GGAADVVML-N-D--------------C 257 (352) T ss_dssp H-HHHHHHHHHTTCGGGEE--------------EEECCTTCGGGGT------TCCEEEEEE-E-S--------------C T ss_pred H-HHHHHHHHHCCCCCCCE--------------EEECCCCCCCCCC------CCCCCEEEE-C-C--------------E T ss_conf 9-99999998638865525--------------7754411134566------777636875-1-3--------------1 Q ss_pred CCCCCCCCCCCEECCCHHHHHHHHHHHHHHHHCCEEEEEECCCCCCC Q ss_conf 34633165684112793478999999997620570599962433685 Q gi|254780410|r 200 FLTCSDYFLGAIFENSPCRDREMQSISDRLACDGGTAIVIDYGYLQS 246 (362) Q Consensus 200 ~~~~~~~~~g~~~E~~~~~~~~~~~i~~~l~~~~G~~L~iDYGy~~~ 246 (362) + .++. .......++.+.+.++. +|.++++|+--... T Consensus 258 l---h~~~-------d~~~~~~L~~~~~aL~p-gG~lli~e~~~~~~ 293 (352) T 3mcz_A 258 L---HYFD-------AREAREVIGHAAGLVKP-GGALLILTMTMNDD 293 (352) T ss_dssp G---GGSC-------HHHHHHHHHHHHHTEEE-EEEEEEEEECCCTT T ss_pred E---ECCC-------HHHHHHHHHHHHHHCCC-CCEEEEEEECCCCC T ss_conf 2---0389-------99999999999986298-81899998204898 No 151 >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* Probab=88.66 E-value=1.2 Score=22.92 Aligned_cols=183 Identities=17% Similarity=0.214 Sum_probs=84.4 Q ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHCCCCHHCCCCHHHCCCCCEEEEE Q ss_conf 88762141007864689888799997418564301210236369789999986411102310110434444569569998 Q gi|254780410|r 76 FPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASYGDKINWYTSLADVPLGFTFLVA 155 (362) Q Consensus 76 ~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~~~~v~w~~~l~~~~~~~~iiia 155 (362) ...+..|+|+|.|+|. |+..+++. ..-.++-+++|+...+.-+++......+..- .-.+ ...++.+ T Consensus 32 ~~~~~~VLDlGCG~G~---dl~k~~~~------~~~~v~GiDis~~~i~~A~~r~~~~~~~~~~----~~~~-~~~f~~~ 97 (313) T 3bgv_A 32 KKRDITVLDLGCGKGG---DLLKWKKG------RINKLVCTDIADVSVKQCQQRYEDMKNRRDS----EYIF-SAEFITA 97 (313) T ss_dssp C--CCEEEEETCTTTT---THHHHHHT------TCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-----CCC-EEEEEEC T ss_pred CCCCCEEEEEECCCCH---HHHHHHHC------CCCEEEEEECCHHHHHHHHHHHHHCCCCCCC----CCCC-CEEEEEC T ss_conf 7897979997347768---89999965------9997999959999999999998854322222----3577-6389965 Q ss_pred E----CCCCCCCEEEEEEECCCCEEEEEEEEECCCEEECCCCCCCCCCCCCCCCCCCCCEECCCHHHHHHHHHHHHHHHH Q ss_conf 1----228875235899915664689989960795352257643432234633165684112793478999999997620 Q gi|254780410|r 156 N----EFFDSLPIKQFVMTEHGIRERMIDIDQHDSLVFNIGDHEIKSNFLTCSDYFLGAIFENSPCRDREMQSISDRLAC 231 (362) Q Consensus 156 N----E~lDAlPv~~~~~~~~~w~E~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~E~~~~~~~~~~~i~~~l~~ 231 (362) + .+.+.+|. .++.+ ....+ ....-+..+-......+++.+++.|+. T Consensus 98 D~~~~~~~~~~~~------------------~~~~F-----------D~I~~-~f~lhy~~~~~~~~~~~l~ni~~~Lkp 147 (313) T 3bgv_A 98 DSSKELLIDKFRD------------------PQMCF-----------DICSC-QFVCHYSFESYEQADMMLRNACERLSP 147 (313) T ss_dssp CTTTSCSTTTCSS------------------TTCCE-----------EEEEE-ETCGGGGGGSHHHHHHHHHHHHTTEEE T ss_pred CHHHCHHHHHCCC------------------CCCCC-----------EEEEE-CCCCEECCHHHHHHHHHHHHHHHHCCC T ss_conf 6321201331467------------------67761-----------08996-564242121587999989998753077 Q ss_pred CCEEEEEECCC-C------CC---CCCCCEEEEECCCCC--CCCC------CCCCCCCCC-CCCCHHHHHHHHHHCCCEE Q ss_conf 57059996243-3------68---588880776405767--6700------010003453-1268899999999689836 Q gi|254780410|r 232 DGGTAIVIDYG-Y------LQ---SRVGDTLQAVKGHTY--VSPL------VNPGQADLS-SHVDFQRLSSIAILYKLYI 292 (362) Q Consensus 232 ~~G~~L~iDYG-y------~~---~r~~gTLr~y~~H~~--~dpl------~~pG~~DIT-ahVnFs~L~~~a~~~g~~~ 292 (362) +|.++.--+. . .. ...++.+-.++-+.. ..++ ..-+..|++ +-|+|..|.+.++++|++. T Consensus 148 -GG~fi~t~~d~~~l~~~l~~~~~~~~~n~i~~i~~~~~~~~~~fg~~~~f~~~~~~~~~Eylv~~~~l~~l~~~~G~~l 226 (313) T 3bgv_A 148 -GGYFIGTTPNSFELIRRLEASETESFGNEIYTVKFQKKGDYPLFGCKYDFNLEGVVDVPEFLVYFPLLNEMAKKYNMKL 226 (313) T ss_dssp -EEEEEEEEECHHHHHHHHTTSSSSEEECSSEEEEESCSSCCCSSCCEEEEEEC---CCEEECCCHHHHHHHGGGGTEEE T ss_pred -CEEEEEEECCHHHHHHHHHHCCCHHCCCCEEEEEEECCCCCCCCCCEEEEEEECCCCHHHHEECHHHHHHHHHHCCCEE T ss_conf -4379998526899999876311222088027999943554456772368984214432552316999999999869999 Q ss_pred ECCEEHHHHHH Q ss_conf 33233899999 Q gi|254780410|r 293 NGLTTQGKFLE 303 (362) Q Consensus 293 ~g~~sQ~~FL~ 303 (362) +...+=.+|.. T Consensus 227 v~~~~F~~~~~ 237 (313) T 3bgv_A 227 VYKKTFLEFYE 237 (313) T ss_dssp EEEEEHHHHHH T ss_pred EEECCHHHHHH T ss_conf 98037799998 No 152 >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 Probab=88.51 E-value=0.3 Score=27.09 Aligned_cols=66 Identities=18% Similarity=0.174 Sum_probs=41.7 Q ss_pred HHHHHHHHHC---CCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHCCCCHHC Q ss_conf 9999999983---88876214100786468988879999741856430121023636978999998641110231011 Q gi|254780410|r 65 IFLICAWEQH---GFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASYGDKINW 139 (362) Q Consensus 65 ~~~~~~~~~~---~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~~~~v~w 139 (362) .|+.+.+.++ +..+.-.|+++|.|+|.++.-+.+ ....+++-++.|+...+.-++++...+..+.| T Consensus 39 ~~~~~~~~~~~~~~~~~g~~vLDlGCG~G~~~~~~a~---------~~~~~V~giD~S~~~i~~a~~~~~~~~~~~~~ 107 (263) T 2a14_A 39 KFNLECLHKTFGPGGLQGDTLIDIGSGPTIYQVLAAC---------DSFQDITLSDFTDRNREELEKWLKKEPGAYDW 107 (263) T ss_dssp HHHHHHHHHHHSTTSCCEEEEEESSCTTCCGGGTTGG---------GTEEEEEEEESCHHHHHHHHHHHHTCTTCCCC T ss_pred HHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHH---------HCCCEEEEECCCHHHHHHHHHHHHHCCCCCHH T ss_conf 9999999998166888998899978886289999998---------47976899518999999999999865765102 No 153 >3adn_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, polyamine biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} PDB: 3o4f_A Probab=88.39 E-value=1.3 Score=22.80 Aligned_cols=78 Identities=26% Similarity=0.350 Sum_probs=53.5 Q ss_pred CCCC----CCCEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEE Q ss_conf 8888----888645767117999999999999999838887621410078646898887999974185643012102363 Q gi|254780410|r 42 PFGA----VGDFVTAPEISQIFGEMLAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVE 117 (362) Q Consensus 42 ~~G~----~GDF~Tsp~is~~Fg~~ia~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE 117 (362) .+|+ +|+.-++-.---.+-++++.--.. -.|.+-+|+-+|.|+|..++.++++ . ...++.+|| T Consensus 48 ~~g~~L~LDg~~q~~~~de~~Yhe~l~h~pl~-----~~~~p~~VLiiGgG~G~~~~e~lk~----~----~v~~v~~VE 114 (294) T 3adn_A 48 AFGRVMALDGVVQTTERDEFIYHEMMTHVPLL-----AHGHAKHVLIIGGGDGAMLREVTRH----K----NVESITMVE 114 (294) T ss_dssp TTCCEEEETTEEEEETTTHHHHHHHHHHHHHH-----HSTTCCEEEEESCTTCHHHHHHHTC----T----TCCEEEEEC T ss_pred CCCEEEEECCHHHHHCCCHHHHHHHHHHHHHH-----CCCCCCEEEEECCCCHHHHHHHHHH----C----CCCEEEEEC T ss_conf 86549999990053047678999999888875-----0998566999889837999999981----9----966389971 Q ss_pred CCHHHHHHHHHHHHH Q ss_conf 697899999864111 Q gi|254780410|r 118 TSERLTLIQKKQLAS 132 (362) Q Consensus 118 ~s~~l~~~Q~~~l~~ 132 (362) +.+...+.-++.++. T Consensus 115 iD~~Vi~~a~~~~~~ 129 (294) T 3adn_A 115 IDAGVVSFCRQYLPN 129 (294) T ss_dssp SCTTHHHHHHHHCHH T ss_pred CCHHHHHHHHHCCCC T ss_conf 789999998744841 No 154 >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E Probab=88.28 E-value=0.98 Score=23.61 Aligned_cols=48 Identities=21% Similarity=0.297 Sum_probs=34.7 Q ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHH Q ss_conf 88762141007864689888799997418564301210236369789999986411 Q gi|254780410|r 76 FPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLA 131 (362) Q Consensus 76 ~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~ 131 (362) .+.+..|+|+|.|.|.++..+.. ..|+ .+++-+|+++.......+++. T Consensus 47 ~~~~p~iLeIGcG~G~~l~~lA~----~~p~----~~~iGiEi~~~~v~~~~~ri~ 94 (246) T 2vdv_E 47 MTKKVTIADIGCGFGGLMIDLSP----AFPE----DLILGMEIRVQVTNYVEDRII 94 (246) T ss_dssp BSCCEEEEEETCTTSHHHHHHHH----HSTT----SEEEEEESCHHHHHHHHHHHH T ss_pred CCCCCEEEEECCCCCHHHHHHHH----HCCC----CCEEEEECCHHHHHHHHHHHH T ss_conf 68998799982689989999998----6898----758988503689999999999 No 155 >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A Probab=88.02 E-value=1.3 Score=22.65 Aligned_cols=78 Identities=18% Similarity=0.292 Sum_probs=52.8 Q ss_pred CCCC----CCCEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEE Q ss_conf 8888----888645767117999999999999999838887621410078646898887999974185643012102363 Q gi|254780410|r 42 PFGA----VGDFVTAPEISQIFGEMLAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVE 117 (362) Q Consensus 42 ~~G~----~GDF~Tsp~is~~Fg~~ia~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE 117 (362) .+|+ +|..-++-.--..+-|+++.- ..+..|.+-+|+-+|.|+|..++.++++ . ...++.+|| T Consensus 85 ~~G~~L~LDg~~q~te~De~~YhEml~h~-----pl~~h~~PkrVLIIGgGdG~~~revlk~----~----~v~~v~~VE 151 (334) T 1xj5_A 85 TYGKVLVLDGVIQLTERDECAYQEMITHL-----PLCSIPNPKKVLVIGGGDGGVLREVARH----A----SIEQIDMCE 151 (334) T ss_dssp SSCEEEEETTEEEEETTTHHHHHHHHHHH-----HHTTSSCCCEEEEETCSSSHHHHHHTTC----T----TCCEEEEEE T ss_pred CCCCEEEECCEEEEECCCHHHHHHHHHHH-----HHHCCCCCCEEEEECCCCHHHHHHHHHC----C----CCCCCEEEC T ss_conf 85608999996342036688888998888-----8751999886999889948999999974----9----965335750 Q ss_pred CCHHHHHHHHHHHHH Q ss_conf 697899999864111 Q gi|254780410|r 118 TSERLTLIQKKQLAS 132 (362) Q Consensus 118 ~s~~l~~~Q~~~l~~ 132 (362) +.+...+.-++.++. T Consensus 152 ID~~Vi~~a~~~fp~ 166 (334) T 1xj5_A 152 IDKMVVDVSKQFFPD 166 (334) T ss_dssp SCHHHHHHHHHHCHH T ss_pred CCHHHHHHHHHHHHH T ss_conf 589999999975344 No 156 >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} Probab=87.79 E-value=1.4 Score=22.55 Aligned_cols=67 Identities=15% Similarity=0.086 Sum_probs=44.8 Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHC Q ss_conf 71179999999999999998388876214100786468988879999741856430121023636978999998641110 Q gi|254780410|r 54 EISQIFGEMLAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASY 133 (362) Q Consensus 54 ~is~~Fg~~ia~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~ 133 (362) .++|.=|++|.. +-+...|. +|+|+|.+.|.=+.-+.+.+.. .-+++.+|.++...+.-++.+... T Consensus 53 ~~~p~~g~lL~~-----L~~~~~~k--~vLEiGT~~GyStl~la~al~~-------~g~v~tie~~~~~~~~A~~~~~~a 118 (237) T 3c3y_A 53 STSPLAGQLMSF-----VLKLVNAK--KTIEVGVFTGYSLLLTALSIPD-------DGKITAIDFDREAYEIGLPFIRKA 118 (237) T ss_dssp SCCHHHHHHHHH-----HHHHTTCC--EEEEECCTTSHHHHHHHHHSCT-------TCEEEEEESCHHHHHHHHHHHHHT T ss_pred CCCHHHHHHHHH-----HHHHHCCC--EEEEEECCCCHHHHHHHHHCCC-------CCEEEEEEECHHHHHHHHHHHHHC T ss_conf 769999999999-----99973998--8999705257899999974899-------848999960267689999999984 Q ss_pred C Q ss_conf 2 Q gi|254780410|r 134 G 134 (362) Q Consensus 134 ~ 134 (362) + T Consensus 119 g 119 (237) T 3c3y_A 119 G 119 (237) T ss_dssp T T ss_pred C T ss_conf 9 No 157 >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* Probab=87.71 E-value=0.54 Score=25.40 Aligned_cols=49 Identities=22% Similarity=0.255 Sum_probs=36.4 Q ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHCC Q ss_conf 88762141007864689888799997418564301210236369789999986411102 Q gi|254780410|r 76 FPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASYG 134 (362) Q Consensus 76 ~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~~ 134 (362) .|..-.|+|+|.|+|.++..+.+. -.+++-++.|+.+.+.-++++...+ T Consensus 80 ~p~~g~vLDlGcG~G~~~~~la~~----------g~~v~gvD~s~~ml~~a~~~~~~~~ 128 (299) T 3g2m_A 80 GPVSGPVLELAAGMGRLTFPFLDL----------GWEVTALELSTSVLAAFRKRLAEAP 128 (299) T ss_dssp CCCCSCEEEETCTTTTTHHHHHTT----------TCCEEEEESCHHHHHHHHHHHHTSC T ss_pred CCCCCCEEEEECCCCHHHHHHHHC----------CCEEEEEECCHHHHHHHHHHHHHCC T ss_conf 999997999916677899999977----------9979999699999999999998647 No 158 >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} Probab=87.54 E-value=1 Score=23.48 Aligned_cols=132 Identities=19% Similarity=0.288 Sum_probs=67.0 Q ss_pred CCCCCHHHHHHHHHH---HHH-HHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHH Q ss_conf 767117999999999---999-9998388876214100786468988879999741856430121023636978999998 Q gi|254780410|r 52 APEISQIFGEMLAIF---LIC-AWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQK 127 (362) Q Consensus 52 sp~is~~Fg~~ia~~---~~~-~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~ 127 (362) .|+....|...++.. ... +......+..-+|+++|.|.|.++..+++. .|+ ++.++++.++...+ T Consensus 154 ~~~~~~~f~~~m~~~~~~~~~~~~~~~d~~~~~~vlDvGgG~G~~~~~l~~~----~p~----~~~~~~D~~~~~~~--- 222 (348) T 3lst_A 154 DAEVEALYYEGMETVSAAEHLILARAGDFPATGTVADVGGGRGGFLLTVLRE----HPG----LQGVLLDRAEVVAR--- 222 (348) T ss_dssp CHHHHHHHHHHHHHHHHTTHHHHHHHSCCCSSEEEEEETCTTSHHHHHHHHH----CTT----EEEEEEECHHHHTT--- T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHH----CCC----EEEEECCCHHHHHH--- T ss_conf 9899999999878888888999988548887766997589986899998843----898----38995361777666--- Q ss_pred HHHHHCCCCHHCCCCHHHCCCCCEEEEEECCCCCCCEEEEEEECCCCEEEEEEEEECCCEEECCCCCCCCCCCCCCCCCC Q ss_conf 64111023101104344445695699981228875235899915664689989960795352257643432234633165 Q gi|254780410|r 128 KQLASYGDKINWYTSLADVPLGFTFLVANEFFDSLPIKQFVMTEHGIRERMIDIDQHDSLVFNIGDHEIKSNFLTCSDYF 207 (362) Q Consensus 128 ~~l~~~~~~v~w~~~l~~~~~~~~iiiaNE~lDAlPv~~~~~~~~~w~E~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (362) ++. .-...... .-+++.-+||..|-- ..++ + .+ .+ .+ T Consensus 223 ~~~-----------~~~~~~~r-i~~~~~d~~~~~p~~----------D~v~-~-~~--------------vl---h~-- 259 (348) T 3lst_A 223 HRL-----------DAPDVAGR-WKVVEGDFLREVPHA----------DVHV-L-KR--------------IL---HN-- 259 (348) T ss_dssp CCC-----------CCGGGTTS-EEEEECCTTTCCCCC----------SEEE-E-ES--------------CG---GG-- T ss_pred HHH-----------HCCCCCCC-EEEECCCCCCCCCCC----------EEEE-E-EC--------------CH---HC-- T ss_conf 665-----------33467883-688447632368775----------0998-7-51--------------02---13-- Q ss_pred CCCEECCC-HHHHHHHHHHHHHHHHCCEEEEEECCCCC Q ss_conf 68411279-34789999999976205705999624336 Q gi|254780410|r 208 LGAIFENS-PCRDREMQSISDRLACDGGTAIVIDYGYL 244 (362) Q Consensus 208 ~g~~~E~~-~~~~~~~~~i~~~l~~~~G~~L~iDYGy~ 244 (362) ++ ......++.+.+.++. +|.++++|.=.. T Consensus 260 ------~~d~~~~~iL~~~~~~L~p-gG~lli~d~~~~ 290 (348) T 3lst_A 260 ------WGDEDSVRILTNCRRVMPA-HGRVLVIDAVVP 290 (348) T ss_dssp ------SCHHHHHHHHHHHHHTCCT-TCEEEEEECCBC T ss_pred ------CCHHHHHHHHHHHHHHCCC-CCEEEEEEEECC T ss_conf ------9999999999999996699-988999986048 No 159 >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus HB8} SCOP: c.66.1.46 Probab=87.06 E-value=1.5 Score=22.28 Aligned_cols=68 Identities=16% Similarity=0.219 Sum_probs=43.5 Q ss_pred ECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHH Q ss_conf 57671179999999999999998388876214100786468988879999741856430121023636978999998641 Q gi|254780410|r 51 TAPEISQIFGEMLAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQL 130 (362) Q Consensus 51 Tsp~is~~Fg~~ia~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l 130 (362) |=|..+.+= |++ .+++... .+..-.|+++|+|+|.++...+. + -.+.+.||.++...+.-++++ T Consensus 20 ~Rpt~~~vr-e~~----f~~l~~~-~~~~~~vLDl~~G~G~~~i~a~~---~-------ga~vv~vD~~~~ai~~~~~N~ 83 (171) T 1ws6_A 20 ARPSPVRLR-KAL----FDYLRLR-YPRRGRFLDPFAGSGAVGLEAAS---E-------GWEAVLVEKDPEAVRLLKENV 83 (171) T ss_dssp CCCCCHHHH-HHH----HHHHHHH-CTTCCEEEEETCSSCHHHHHHHH---T-------TCEEEEECCCHHHHHHHHHHH T ss_pred CCCCCHHHH-HHH----HHHHHCC-CCCCCEEEECCCCHHHHHHHHHH---C-------CCCCCCEECCHHHHHHHHHHH T ss_conf 896748999-999----9997364-57979899962067899999998---0-------895300606878999999878 Q ss_pred HHCC Q ss_conf 1102 Q gi|254780410|r 131 ASYG 134 (362) Q Consensus 131 ~~~~ 134 (362) ...+ T Consensus 84 ~~~g 87 (171) T 1ws6_A 84 RRTG 87 (171) T ss_dssp HHHT T ss_pred HHCC T ss_conf 8606 No 160 >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} Probab=86.85 E-value=1.6 Score=22.20 Aligned_cols=51 Identities=16% Similarity=0.170 Sum_probs=38.0 Q ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHCC Q ss_conf 88762141007864689888799997418564301210236369789999986411102 Q gi|254780410|r 76 FPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASYG 134 (362) Q Consensus 76 ~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~~ 134 (362) .|..-.|+++|.|+|.|+..+++. . ...+.+.+|+|+...+.-++++...+ T Consensus 19 v~~g~~vlDIG~g~G~l~i~l~~~----~----~~~~viavDi~~~~l~~A~~n~~~~g 69 (230) T 3lec_A 19 VPKGARLLDVGSDHAYLPIFLLQM----G----YCDFAIAGEVVNGPYQSALKNVSEHG 69 (230) T ss_dssp SCTTEEEEEETCSTTHHHHHHHHT----T----CEEEEEEEESSHHHHHHHHHHHHHTT T ss_pred CCCCCEEEEECCCHHHHHHHHHHC----C----CCCEEEEEECCHHHHHHHHHHHHHCC T ss_conf 899899999528649999999983----9----99879993099999999999999839 No 161 >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} Probab=86.70 E-value=1.6 Score=22.15 Aligned_cols=73 Identities=25% Similarity=0.250 Sum_probs=47.8 Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHH Q ss_conf 67117999999999999999838887621410078646898887999974185643012102363697899999864111 Q gi|254780410|r 53 PEISQIFGEMLAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLAS 132 (362) Q Consensus 53 p~is~~Fg~~ia~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~ 132 (362) +.++|.=|++|... + .+..|. +|+|+|.+.|.=+.-+.+.+. + .-+++.+|.++...+.-++.+.. T Consensus 42 m~i~p~~g~~L~~L-~----~~~~ak--~iLEiGT~~GySal~lA~al~---~----~g~v~tie~~~~~~~~A~~~~~~ 107 (239) T 2hnk_A 42 MQISPEEGQFLNIL-T----KISGAK--RIIEIGTFTGYSSLCFASALP---E----DGKILCCDVSEEWTNVARKYWKE 107 (239) T ss_dssp CSCCHHHHHHHHHH-H----HHHTCS--EEEEECCTTCHHHHHHHHHSC---T----TCEEEEEESCHHHHHHHHHHHHH T ss_pred CCCCHHHHHHHHHH-H----HHHCCC--EEEEEECCCCHHHHHHHHHCC---C----CCCEEEEECCHHHHHHHHHHHHH T ss_conf 77599999999999-9----972997--799972545889999997178---7----88689994538889999999998 Q ss_pred CC--CCHHC Q ss_conf 02--31011 Q gi|254780410|r 133 YG--DKINW 139 (362) Q Consensus 133 ~~--~~v~w 139 (362) .+ ++|.. T Consensus 108 ag~~~~I~~ 116 (239) T 2hnk_A 108 NGLENKIFL 116 (239) T ss_dssp TTCGGGEEE T ss_pred CCCCEEEEE T ss_conf 799625999 No 162 >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, tRNA processing; HET: SAM; 1.50A {Escherichia coli K12} PDB: 3dxx_A* 3dxz_A* Probab=86.59 E-value=1.4 Score=22.60 Aligned_cols=47 Identities=15% Similarity=0.143 Sum_probs=33.2 Q ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHH Q ss_conf 88762141007864689888799997418564301210236369789999986411 Q gi|254780410|r 76 FPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLA 131 (362) Q Consensus 76 ~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~ 131 (362) .+.++ ++|+|.|+|..+..+.. ..|+ ..++-+|+++.....-.+++. T Consensus 33 ~~~pl-iLEIGcG~G~~l~~~A~----~~P~----~~~iGiEi~~~~v~~a~~~~~ 79 (218) T 3dxy_A 33 REAPV-TLEIGFGMGASLVAMAK----DRPE----QDFLGIEVHSPGVGACLASAH 79 (218) T ss_dssp SCCCE-EEEESCTTCHHHHHHHH----HCTT----SEEEEECSCHHHHHHHHHHHH T ss_pred CCCCE-EEEECCCCCHHHHHHHH----HCCC----CCEEEEEEECCCEEEEHHHCC T ss_conf 99953-99972688899999999----6899----988999972350553032120 No 163 >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein, transferase; HET: TNA MTA; 1.66A {Methanothermobacterthermautotrophicus} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* Probab=86.56 E-value=1.6 Score=22.10 Aligned_cols=56 Identities=18% Similarity=0.144 Sum_probs=40.1 Q ss_pred HHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHCC Q ss_conf 9983888762141007864689888799997418564301210236369789999986411102 Q gi|254780410|r 71 WEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASYG 134 (362) Q Consensus 71 ~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~~ 134 (362) +...+....-.|+++|.|.|.+..-++.. .| ..+++.||.||.+.+.-++++...+ T Consensus 115 ~~~~~l~~g~rVLdiGcG~g~~t~~~~a~----~~----g~~V~gIDisp~~~~~Ar~~~~~~g 170 (298) T 3fpf_A 115 AALGRFRRGERAVFIGGGPLPLTGILLSH----VY----GMRVNVVEIEPDIAELSRKVIEGLG 170 (298) T ss_dssp HHHTTCCTTCEEEEECCCSSCHHHHHHHH----TT----CCEEEEEESSHHHHHHHHHHHHHHT T ss_pred HHHCCCCCCCEEEEEECCCHHHHHHHHHH----CC----CCEEEEEECCHHHHHHHHHHHHHCC T ss_conf 98548999998999606856999999985----68----9989999699999999999798649 No 164 >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} Probab=86.34 E-value=1.1 Score=23.35 Aligned_cols=48 Identities=17% Similarity=0.221 Sum_probs=37.8 Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHC Q ss_conf 76214100786468988879999741856430121023636978999998641110 Q gi|254780410|r 78 SCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASY 133 (362) Q Consensus 78 ~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~ 133 (362) ..-.|+++|.|+|.++.++.+.+ | ..+++-|++|+.+.+.-++++... T Consensus 46 ~~~~vLDiGCG~G~~~i~la~~~----~----~~~v~GiDis~~~i~~A~~n~~~~ 93 (292) T 3g07_A 46 RGRDVLDLGCNVGHLTLSIACKW----G----PSRMVGLDIDSRLIHSARQNIRHY 93 (292) T ss_dssp TTSEEEEESCTTCHHHHHHHHHT----C----CSEEEEEESCHHHHHHHHHTC--- T ss_pred CCCEEEEEECCCCHHHHHHHHHC----C----CCEEEEEECCHHHHHHHHHHHHHH T ss_conf 99959998579789999999878----9----988999709889999999999983 No 165 >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 Probab=85.40 E-value=1.6 Score=22.12 Aligned_cols=68 Identities=10% Similarity=0.047 Sum_probs=45.2 Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHH Q ss_conf 67117999999999999999838887621410078646898887999974185643012102363697899999864111 Q gi|254780410|r 53 PEISQIFGEMLAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLAS 132 (362) Q Consensus 53 p~is~~Fg~~ia~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~ 132 (362) +.+||.=|++|+. +-.+..|. +|+|+|.+.|.=+.-+.+.+ .+ .-+++.+|.++...+.-++.+.. T Consensus 51 ~~i~p~~g~lL~~-----l~~~~~~k--~vLEiGt~~GySal~lA~al---~~----~g~v~tie~~~~~~~~Ar~~~~~ 116 (229) T 2avd_A 51 SMMTCEQAQLLAN-----LARLIQAK--KALDLGTFTGYSALALALAL---PA----DGRVVTCEVDAQPPELGRPLWRQ 116 (229) T ss_dssp GSCCHHHHHHHHH-----HHHHTTCC--EEEEECCTTSHHHHHHHTTS---CT----TCEEEEEESCSHHHHHHHHHHHH T ss_pred CCCCHHHHHHHHH-----HHHHHCCC--EEEEEECCCCHHHHHHHHCC---CC----CCEEEEEECCHHHHHHHHHHHHH T ss_conf 6649999999999-----99864997--89998444689999999437---99----97899995746599999999997 Q ss_pred CC Q ss_conf 02 Q gi|254780410|r 133 YG 134 (362) Q Consensus 133 ~~ 134 (362) .+ T Consensus 117 ag 118 (229) T 2avd_A 117 AE 118 (229) T ss_dssp TT T ss_pred CC T ss_conf 69 No 166 >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} Probab=84.56 E-value=2 Score=21.47 Aligned_cols=72 Identities=24% Similarity=0.290 Sum_probs=46.9 Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHC Q ss_conf 71179999999999999998388876214100786468988879999741856430121023636978999998641110 Q gi|254780410|r 54 EISQIFGEMLAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASY 133 (362) Q Consensus 54 ~is~~Fg~~ia~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~ 133 (362) .++|.=|++|...+ .+..|. .|+|+|.+.|.=+.-+.+.+ .| .-+++.+|.++...+..++.+... T Consensus 55 ~i~p~~g~~L~~L~-----~~~~ak--~iLEiGT~~GyStl~lA~al---~~----~g~v~tiE~~~~~~~~A~~~~~~a 120 (232) T 3cbg_A 55 QISPEQAQFLGLLI-----SLTGAK--QVLEIGVFRGYSALAMALQL---PP----DGQIIACDQDPNATAIAKKYWQKA 120 (232) T ss_dssp SCCHHHHHHHHHHH-----HHHTCC--EEEEECCTTSHHHHHHHTTS---CT----TCEEEEEESCHHHHHHHHHHHHHH T ss_pred CCCHHHHHHHHHHH-----HHHCCC--EEEEEECCCCHHHHHHHHHC---CC----CCEEEEEECCCCHHHHHHHHHHHC T ss_conf 65999999999999-----974997--89998434389999999858---99----858999976741489999999986 Q ss_pred C--CCHHC Q ss_conf 2--31011 Q gi|254780410|r 134 G--DKINW 139 (362) Q Consensus 134 ~--~~v~w 139 (362) + +++.. T Consensus 121 g~~~~i~~ 128 (232) T 3cbg_A 121 GVAEKISL 128 (232) T ss_dssp TCGGGEEE T ss_pred CCCCCEEE T ss_conf 99862899 No 167 >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken structural genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 Probab=84.56 E-value=1.7 Score=21.92 Aligned_cols=74 Identities=20% Similarity=0.298 Sum_probs=48.6 Q ss_pred CCCEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHH Q ss_conf 88864576711799999999999999983888762141007864689888799997418564301210236369789999 Q gi|254780410|r 46 VGDFVTAPEISQIFGEMLAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLI 125 (362) Q Consensus 46 ~GDF~Tsp~is~~Fg~~ia~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~ 125 (362) +|+.=++-.--..+-|+++.-.. +-.|.+-+++-+|.|.|..++.+++. . ...++..||+.|...+. T Consensus 50 Dg~~q~~~~de~~Yhe~l~h~~l-----~~~~~pk~vLiiG~G~G~~~~~ll~~----~----~~~~i~~VEiDp~Vi~~ 116 (314) T 1uir_A 50 DKDVQSTERDEYIYHETLVHPAM-----LTHPEPKRVLIVGGGEGATLREVLKH----P----TVEKAVMVDIDGELVEV 116 (314) T ss_dssp TTEEEEETTTHHHHHHHHHHHHH-----HHSSCCCEEEEEECTTSHHHHHHTTS----T----TCCEEEEEESCHHHHHH T ss_pred CCHHHCCCCCHHHHHHHHHHHHH-----HHCCCCCEEEEECCCCHHHHHHHHHC----C----CCCEEEEECHHHHHHHH T ss_conf 89002034417788999888888-----60999787999889837999999865----9----96779874021899999 Q ss_pred HHHHHHH Q ss_conf 9864111 Q gi|254780410|r 126 QKKQLAS 132 (362) Q Consensus 126 Q~~~l~~ 132 (362) -++.++. T Consensus 117 a~~~f~~ 123 (314) T 1uir_A 117 AKRHMPE 123 (314) T ss_dssp HHHHCHH T ss_pred HHHCCCC T ss_conf 8751830 No 168 >2i7c_A Spermidine synthase; transferase, structural genomics consortium, SGC; HET: AAT 1PG; 1.71A {Plasmodium falciparum 3D7} PDB: 2hte_A* 3b7p_A* 2pwp_A* Probab=84.54 E-value=2 Score=21.46 Aligned_cols=78 Identities=18% Similarity=0.213 Sum_probs=52.8 Q ss_pred CCCC----CCCEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEE Q ss_conf 8888----888645767117999999999999999838887621410078646898887999974185643012102363 Q gi|254780410|r 42 PFGA----VGDFVTAPEISQIFGEMLAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVE 117 (362) Q Consensus 42 ~~G~----~GDF~Tsp~is~~Fg~~ia~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE 117 (362) .+|+ +|..-++..--..+-++++.-. ..-.|.+-+++-+|.|+|.+++.++++ . ...++.+|| T Consensus 43 ~~gr~L~LDg~~q~~~~de~~Yhe~l~h~~-----~~~~~~pk~vLiiGgG~G~~~~ellk~----~----~~~~i~~VE 109 (283) T 2i7c_A 43 TYGKVLVLDGVIQLTEKDEFAYHEMMTHVP-----MTVSKEPKNVLVVGGGDGGIIRELCKY----K----SVENIDICE 109 (283) T ss_dssp SSCEEEEETTEEEEETTTHHHHHHHHHHHH-----HTTSSSCCEEEEEECTTSHHHHHHTTC----T----TCCEEEEEE T ss_pred CCCEEEEECCEEEEECCCCCCHHHHHHHHH-----HHCCCCCCEEEEECCCCHHHHHHHHHC----C----CCCEEEEEC T ss_conf 877099989878675587431579998788-----652998244999838834999999974----9----963799974 Q ss_pred CCHHHHHHHHHHHHH Q ss_conf 697899999864111 Q gi|254780410|r 118 TSERLTLIQKKQLAS 132 (362) Q Consensus 118 ~s~~l~~~Q~~~l~~ 132 (362) +.+...+.-++.++. T Consensus 110 iD~~Vi~~a~~~f~~ 124 (283) T 2i7c_A 110 IDETVIEVSKIYFKN 124 (283) T ss_dssp SCHHHHHHHHHHCTT T ss_pred CCHHHHHHHHHHHHH T ss_conf 789999999987465 No 169 >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 Probab=83.54 E-value=2.2 Score=21.18 Aligned_cols=60 Identities=10% Similarity=0.055 Sum_probs=41.1 Q ss_pred HHHHHHHHCC--CCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHC Q ss_conf 9999999838--8876214100786468988879999741856430121023636978999998641110 Q gi|254780410|r 66 FLICAWEQHG--FPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASY 133 (362) Q Consensus 66 ~~~~~~~~~~--~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~ 133 (362) |+.+++.... ......++++|.|+|..+.-+.... | ..+++-+|+|+...+.-++++... T Consensus 51 ~i~dlL~~~~~~~~~~~~~lDiGtGsg~I~~~L~~~~----~----~~~~~~~Di~~~al~~A~~N~~~n 112 (254) T 2h00_A 51 WVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLLGATL----N----GWYFLATEVDDMCFNYAKKNVEQN 112 (254) T ss_dssp HHHHHHCCCCGGGCCCCEEEEESCTTTTHHHHHHHHH----H----CCEEEEEESCHHHHHHHHHHHHHT T ss_pred HHHHHHCCCCCCCCCCCEEEEECCCHHHHHHHHHHHC----C----CCEEEEEECCHHHHHHHHHHHHHH T ss_conf 9999970546666777548995678789999999977----9----975999989999999999999983 No 170 >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Escherichia coli O157} Probab=83.40 E-value=2.2 Score=21.14 Aligned_cols=82 Identities=13% Similarity=0.089 Sum_probs=48.8 Q ss_pred CCEEECCCCCHHHHHHHHHHHH-----HHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCH----HHHHCCCEEEEE Q ss_conf 8864576711799999999999-----9999838887621410078646898887999974185----643012102363 Q gi|254780410|r 47 GDFVTAPEISQIFGEMLAIFLI-----CAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKP----DFFSVLSIYMVE 117 (362) Q Consensus 47 GDF~Tsp~is~~Fg~~ia~~~~-----~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p----~~~~~l~~~ivE 117 (362) +|+|=|. +.-.-|....++. +.|.+ .....++|+|+|=|.|.=..-.++.+.+..+ .-...++|+.+| T Consensus 27 ~e~YhS~--~ga~~Es~~vFi~~~~L~~r~~~-~~~~~~~IlEiGFG~GlNfl~t~~~~~~~~~~~~~~~~~~L~yisiE 103 (257) T 2qy6_A 27 DDVYFSN--DNGLEETRYVFLGGNQLEARFPE-HPHPLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFE 103 (257) T ss_dssp TEESSCT--TTHHHHHHHHHHHHTTHHHHGGG-CSSSEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEE T ss_pred CCCCCCC--CCHHHHHHHHHHCCCCCHHHHHC-CCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEC T ss_conf 9746798--77999999972366998698863-99885499994786108999999999974342655541279999615 Q ss_pred CCHHHHHHHHHHHH Q ss_conf 69789999986411 Q gi|254780410|r 118 TSERLTLIQKKQLA 131 (362) Q Consensus 118 ~s~~l~~~Q~~~l~ 131 (362) ..|--.+..++... T Consensus 104 ~~Pl~~~~l~~~~~ 117 (257) T 2qy6_A 104 KFPLTRADLALAHQ 117 (257) T ss_dssp SSCCCHHHHHHHHT T ss_pred CCCCCHHHHHHHHH T ss_conf 77766778876541 No 171 >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* Probab=83.23 E-value=2.3 Score=21.10 Aligned_cols=72 Identities=21% Similarity=0.269 Sum_probs=49.0 Q ss_pred CCCEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHH Q ss_conf 88864576711799999999999999983888762141007864689888799997418564301210236369789999 Q gi|254780410|r 46 VGDFVTAPEISQIFGEMLAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLI 125 (362) Q Consensus 46 ~GDF~Tsp~is~~Fg~~ia~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~ 125 (362) +|++-.+..---.+-++++.-.. +..|.+-+|+-+|.|+|..++.+++. | ..+...||+.+...+. T Consensus 48 Dg~~q~~~~de~~Y~e~l~h~~l-----~~~~~p~~VLiiG~G~G~~~~~~l~~-----~----~~~v~~VEiD~~vi~~ 113 (281) T 1mjf_A 48 DGTVQLVTLGERSYHEPLVHPAM-----LAHPKPKRVLVIGGGDGGTVREVLQH-----D----VDEVIMVEIDEDVIMV 113 (281) T ss_dssp TTEEEEETTTTHHHHHHHHHHHH-----HHSSCCCEEEEEECTTSHHHHHHTTS-----C----CSEEEEEESCHHHHHH T ss_pred CCCEEEECCCHHHHHHHHHHHHH-----HCCCCCCEEEEEECCCHHHHHHHHHC-----C----CCEEEEECCCHHHHHH T ss_conf 89232425507777898886887-----50999887999928943999999843-----8----8358997068899999 Q ss_pred HHHHHH Q ss_conf 986411 Q gi|254780410|r 126 QKKQLA 131 (362) Q Consensus 126 Q~~~l~ 131 (362) -++.++ T Consensus 114 a~~~~~ 119 (281) T 1mjf_A 114 SKDLIK 119 (281) T ss_dssp HHHHTC T ss_pred HHHHHH T ss_conf 998511 No 172 >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* Probab=82.97 E-value=1.1 Score=23.37 Aligned_cols=48 Identities=13% Similarity=0.119 Sum_probs=33.4 Q ss_pred CCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHH Q ss_conf 388876214100786468988879999741856430121023636978999998641 Q gi|254780410|r 74 HGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQL 130 (362) Q Consensus 74 ~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l 130 (362) .+.+.. .|+|+|.|.|.++..+.+. .|+ .+++-||+|+.+.+.-+.+. T Consensus 21 ~~~~~~-~vLDvGcG~G~~~~~la~~----~p~----~~vvGvD~s~~~l~~a~~~~ 68 (225) T 3p2e_A 21 IGQFDR-VHIDLGTGDGRNIYKLAIN----DQN----TFYIGIDPVKENLFDISKKI 68 (225) T ss_dssp HTTCSE-EEEEETCTTSHHHHHHHHT----CTT----EEEEEECSCCGGGHHHHHHH T ss_pred HCCCCC-EEEEEEEECCHHHHHHHHH----CCC----CEEEEEECCHHHHHHHHHHH T ss_conf 488999-8999227673999999986----899----78999867889999999888 No 173 >2qfm_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC; HET: SPD MTA; 1.80A {Homo sapiens} PDB: 3c6k_A* 3c6m_A* Probab=82.88 E-value=1.4 Score=22.64 Aligned_cols=75 Identities=21% Similarity=0.216 Sum_probs=44.9 Q ss_pred CCCC----CCCEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEE Q ss_conf 8888----888645767117999999999999999838887621410078646898887999974185643012102363 Q gi|254780410|r 42 PFGA----VGDFVTAPEISQIFGEMLAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVE 117 (362) Q Consensus 42 ~~G~----~GDF~Tsp~is~~Fg~~ia~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE 117 (362) .+|+ +|+.-+|- ..-.+-+++..- .+-.+.+-+++-+|.|+|..++.+|++ . ..++.+|| T Consensus 155 ~~Gr~L~LDg~~q~te-~D~~Y~e~l~~~------~l~~~~pk~VLIIGGGdG~~~revlk~----~-----~~~V~~VE 218 (364) T 2qfm_A 155 QFGNILILSGDVNLAE-SDLAYTRAIMGS------GKEDYTGKDVLILGGGDGGILCEIVKL----K-----PKMVTMVE 218 (364) T ss_dssp TTEEEEEETTEEEEET-TCHHHHHHHTTT------TCCCCTTCEEEEEECTTCHHHHHHHTT----C-----CSEEEEEE T ss_pred CCCEEEEECCEEEEEC-CCHHHHHHHHHH------HHHCCCCCEEEEEECCCHHHHHHHHHC----C-----CCEEEEEE T ss_conf 8753999989136866-738899998625------754589885999969943999999861----7-----84289971 Q ss_pred CCHHHHHHHHHHHHH Q ss_conf 697899999864111 Q gi|254780410|r 118 TSERLTLIQKKQLAS 132 (362) Q Consensus 118 ~s~~l~~~Q~~~l~~ 132 (362) +.+...+.-++.++. T Consensus 219 ID~~Vve~akk~~~~ 233 (364) T 2qfm_A 219 IDQMVIDGCKKYMRK 233 (364) T ss_dssp SCHHHHHHHHHHCCC T ss_pred CCHHHHHHHHHHHHH T ss_conf 038999999986565 No 174 >3bwc_A Spermidine synthase; SAM, SGPP, structural genomics, PSI, protein structure initiative; HET: MSE SAM; 2.30A {Trypanosoma cruzi strain cl brener} PDB: 3bwb_A* Probab=82.58 E-value=2.4 Score=20.93 Aligned_cols=79 Identities=19% Similarity=0.286 Sum_probs=54.6 Q ss_pred CCCC----CCCEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEE Q ss_conf 8888----888645767117999999999999999838887621410078646898887999974185643012102363 Q gi|254780410|r 42 PFGA----VGDFVTAPEISQIFGEMLAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVE 117 (362) Q Consensus 42 ~~G~----~GDF~Tsp~is~~Fg~~ia~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE 117 (362) .+|+ +|+.-++-.=--.+-|+++.- .....|.+-+|+-+|.|+|..++.++++ | ...++.+|| T Consensus 60 ~~G~~L~LDg~~q~se~De~~YhE~l~h~-----~l~~h~~pk~VLIiGgGdG~~~rellk~-----~---~v~~v~~VE 126 (304) T 3bwc_A 60 PWGTVMALDGCIQVTDYDEFVYHEVLGHT-----SLCSHPKPERVLIIGGGDGGVLREVLRH-----G---TVEHCDLVD 126 (304) T ss_dssp SCCEEEEETTEEEEETTTHHHHHHHHHHH-----HHTTSSSCCEEEEEECTTSHHHHHHHTC-----T---TCCEEEEEE T ss_pred CCCCEEEECCEEEEECCCHHHHHHHHHHH-----HHHCCCCCCEEEEECCCCHHHHHHHHHC-----C---CCCEEEEEE T ss_conf 63418999896555056588899998888-----8743999786999838937999999965-----9---942799980 Q ss_pred CCHHHHHHHHHHHHHC Q ss_conf 6978999998641110 Q gi|254780410|r 118 TSERLTLIQKKQLASY 133 (362) Q Consensus 118 ~s~~l~~~Q~~~l~~~ 133 (362) +.+...+.-++.++.. T Consensus 127 ID~~Vi~~~~~~~p~~ 142 (304) T 3bwc_A 127 IDGEVMEQSKQHFPQI 142 (304) T ss_dssp SCHHHHHHHHHHCHHH T ss_pred CCHHHHHHHHHHCHHH T ss_conf 5889999999865443 No 175 >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 Probab=82.09 E-value=2.5 Score=20.81 Aligned_cols=74 Identities=24% Similarity=0.317 Sum_probs=52.6 Q ss_pred CCCEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHH Q ss_conf 88864576711799999999999999983888762141007864689888799997418564301210236369789999 Q gi|254780410|r 46 VGDFVTAPEISQIFGEMLAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLI 125 (362) Q Consensus 46 ~GDF~Tsp~is~~Fg~~ia~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~ 125 (362) +|+.-++-.-...+-|+++.-.. ...|.+-+++-+|.|+|..++.++++ . ...++.+||+.+...+. T Consensus 48 dg~~q~~~~de~~Yhe~l~h~~l-----~~~~~pk~VLiiGgG~G~~~~~~l~~----~----~~~~v~~VEiD~~Vi~~ 114 (275) T 1iy9_A 48 DGMVMTSEKDEFVYHEMVAHVPL-----FTHPNPEHVLVVGGGDGGVIREILKH----P----SVKKATLVDIDGKVIEY 114 (275) T ss_dssp TTEEEEETTTHHHHHHHHHHHHH-----HHSSSCCEEEEESCTTCHHHHHHTTC----T----TCSEEEEEESCHHHHHH T ss_pred CCEEEEECCCCCHHHHHHHHHHH-----HCCCCCCEEEEEECCCHHHHHHHHHC----C----CCCEEEEEEECHHHHHH T ss_conf 99874530780066799877887-----50999675999907963999999965----9----96469999708899999 Q ss_pred HHHHHHH Q ss_conf 9864111 Q gi|254780410|r 126 QKKQLAS 132 (362) Q Consensus 126 Q~~~l~~ 132 (362) -++.++. T Consensus 115 a~~~~~~ 121 (275) T 1iy9_A 115 SKKFLPS 121 (275) T ss_dssp HHHHCHH T ss_pred HHHHCHH T ss_conf 9985723 No 176 >2pt6_A Spermidine synthase; transferase, structural genomics consortium, SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum 3D7} PDB: 2pss_A* 2pt9_A* Probab=82.07 E-value=2.5 Score=20.81 Aligned_cols=78 Identities=18% Similarity=0.228 Sum_probs=52.2 Q ss_pred CCCC----CCCEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEE Q ss_conf 8888----888645767117999999999999999838887621410078646898887999974185643012102363 Q gi|254780410|r 42 PFGA----VGDFVTAPEISQIFGEMLAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVE 117 (362) Q Consensus 42 ~~G~----~GDF~Tsp~is~~Fg~~ia~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE 117 (362) .+|+ +|+.-++-.=--.+-|+++.-.. ...|.+-+|+=+|.|+|..++.++++ . ...++.+|| T Consensus 81 ~~Gr~L~LDg~~q~te~de~~YhE~l~h~pl-----~~~~~pk~VLIiGgGdG~~~rellk~----~----~~~~v~~VE 147 (321) T 2pt6_A 81 TYGKVLVLDGVIQLTEKDEFAYHEMMTHVPM-----TVSKEPKNVLVVGGGDGGIIRELCKY----K----SVENIDICE 147 (321) T ss_dssp SSCEEEEETTEEEEETTTHHHHHHHHHHHHH-----HHSSSCCEEEEEECTTCHHHHHHTTC----T----TCCEEEEEE T ss_pred CCCEEEEECCEEEEECCCHHHHHHHHHHHHH-----HCCCCCCEEEEECCCCHHHHHHHHHC----C----CCCCEEEEC T ss_conf 8651999988524524657688899871686-----51999576999848953999999972----9----964147852 Q ss_pred CCHHHHHHHHHHHHH Q ss_conf 697899999864111 Q gi|254780410|r 118 TSERLTLIQKKQLAS 132 (362) Q Consensus 118 ~s~~l~~~Q~~~l~~ 132 (362) +.+...+.-++.++. T Consensus 148 ID~~Vv~~ak~~f~~ 162 (321) T 2pt6_A 148 IDETVIEVSKIYFKN 162 (321) T ss_dssp SCHHHHHHHHHHCTT T ss_pred CCHHHHHHHHHHHHH T ss_conf 579999999986266 No 177 >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} Probab=82.05 E-value=2.5 Score=20.80 Aligned_cols=53 Identities=13% Similarity=0.129 Sum_probs=37.6 Q ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHCC-CCHHC Q ss_conf 88762141007864689888799997418564301210236369789999986411102-31011 Q gi|254780410|r 76 FPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASYG-DKINW 139 (362) Q Consensus 76 ~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~~-~~v~w 139 (362) .|.. .|+++|+|+|.++.-+. + | .-+++-+|.|+...+.-+++....+ ++|.+ T Consensus 21 ~~~~-~VLD~gcG~G~~t~~LA----~--~----~~~V~aiDis~~al~~a~~n~~~~~l~nv~~ 74 (185) T 3mti_A 21 DDES-IVVDATMGNGNDTAFLA----G--L----SKKVYAFDVQEQALGKTSQRLSDLGIENTEL 74 (185) T ss_dssp CTTC-EEEESCCTTSHHHHHHH----T--T----SSEEEEEESCHHHHHHHHHHHHHHTCCCEEE T ss_pred CCCC-EEEEEEEECCHHHHHHH----H--C----CCEEEECCCCHHHHHHHHHHHHHCCCCCEEE T ss_conf 9999-99999638889999998----2--6----9989975898788878999999829984899 No 178 >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} Probab=81.76 E-value=2.4 Score=20.93 Aligned_cols=55 Identities=15% Similarity=0.155 Sum_probs=38.2 Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHCC--CCHHC Q ss_conf 8762141007864689888799997418564301210236369789999986411102--31011 Q gi|254780410|r 77 PSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASYG--DKINW 139 (362) Q Consensus 77 p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~~--~~v~w 139 (362) |..-.|+++|.|+|.|+.-+++. . ...+.+.+|+|+...+.-++++...+ ++|.+ T Consensus 20 ~~g~~vlDiGcg~G~l~~~l~~~----~----~~~~V~avDi~~~~l~~A~~n~~~~gl~~~I~~ 76 (244) T 3gnl_A 20 TKNERIADIGSDHAYLPCFAVKN----Q----TASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDV 76 (244) T ss_dssp CSSEEEEEETCSTTHHHHHHHHT----T----SEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEE T ss_pred CCCCEEEEECCCHHHHHHHHHHC----C----CCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEE T ss_conf 99998999718648999999980----9----998899963889999999999998299986799 No 179 >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* Probab=81.33 E-value=2.7 Score=20.63 Aligned_cols=78 Identities=22% Similarity=0.275 Sum_probs=52.2 Q ss_pred CCCC----CCCEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEE Q ss_conf 8888----888645767117999999999999999838887621410078646898887999974185643012102363 Q gi|254780410|r 42 PFGA----VGDFVTAPEISQIFGEMLAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVE 117 (362) Q Consensus 42 ~~G~----~GDF~Tsp~is~~Fg~~ia~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE 117 (362) .+|+ +|+.-.+-.=--.+-|+++.--. +-.|.+-+|+-+|.|+|..++.+++. . ...++.+|| T Consensus 55 ~~g~~l~LDg~~q~~e~de~~YhE~l~h~pl-----~~~~~pk~VLiiGgG~G~~~~e~l~~----~----~~~~v~~VE 121 (296) T 1inl_A 55 DLGVVFALDGITMTTEKDEFMYHEMLAHVPM-----FLHPNPKKVLIIGGGDGGTLREVLKH----D----SVEKAILCE 121 (296) T ss_dssp TTEEEEEETTEEEEETTTHHHHHHHHHHHHH-----HHSSSCCEEEEEECTTCHHHHHHTTS----T----TCSEEEEEE T ss_pred CCCEEEEECCEEEEECCCCHHHHHHHHHHHH-----HHCCCCCEEEEECCCCHHHHHHHHHC----C----CCCCEEEEC T ss_conf 8545999899654403882032698871887-----61999787999879827999999964----9----977178863 Q ss_pred CCHHHHHHHHHHHHH Q ss_conf 697899999864111 Q gi|254780410|r 118 TSERLTLIQKKQLAS 132 (362) Q Consensus 118 ~s~~l~~~Q~~~l~~ 132 (362) +.|...+.-++.++. T Consensus 122 ID~~Vi~~a~~~~~~ 136 (296) T 1inl_A 122 VDGLVIEAARKYLKQ 136 (296) T ss_dssp SCHHHHHHHHHHCHH T ss_pred CCHHHHHHHHHHHHH T ss_conf 578999999987676 No 180 >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 Probab=79.08 E-value=3.1 Score=20.15 Aligned_cols=75 Identities=9% Similarity=0.040 Sum_probs=50.5 Q ss_pred CCCCEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHH----------HCCCEE Q ss_conf 8888645767117999999999999999838887621410078646898887999974185643----------012102 Q gi|254780410|r 45 AVGDFVTAPEISQIFGEMLAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFF----------SVLSIY 114 (362) Q Consensus 45 ~~GDF~Tsp~is~~Fg~~ia~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~----------~~l~~~ 114 (362) +.|-|||-.+|..+. +.+. .-...-.|++..+|+|.|.....+++.....+.. ....++ T Consensus 147 ~~GqffTP~~Iv~~m--------v~ll---~p~~~~~I~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 215 (541) T 2ar0_A 147 GAGQYFTPRPLIKTI--------IHLL---KPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFI 215 (541) T ss_dssp ---CCCCCHHHHHHH--------HHHH---CCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEE T ss_pred CCCEECCCHHHHHHH--------HHHH---CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH T ss_conf 587567989999999--------9862---89988730465778560579999999984366211104678888876663 Q ss_pred EEECCHHHHHHHHHHH Q ss_conf 3636978999998641 Q gi|254780410|r 115 MVETSERLTLIQKKQL 130 (362) Q Consensus 115 ivE~s~~l~~~Q~~~l 130 (362) -+|+++.....-+-.+ T Consensus 216 G~E~~~~~~~la~~nl 231 (541) T 2ar0_A 216 GLELVPGTRRLALMNC 231 (541) T ss_dssp EEESCHHHHHHHHHHH T ss_pred HHHCCHHHHHHHHHHH T ss_conf 0206699999998646 No 181 >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 Probab=78.17 E-value=2 Score=21.41 Aligned_cols=78 Identities=26% Similarity=0.361 Sum_probs=52.2 Q ss_pred CCCC----CCCEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEE Q ss_conf 8888----888645767117999999999999999838887621410078646898887999974185643012102363 Q gi|254780410|r 42 PFGA----VGDFVTAPEISQIFGEMLAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVE 117 (362) Q Consensus 42 ~~G~----~GDF~Tsp~is~~Fg~~ia~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE 117 (362) .+|+ +|+.-.+-.--..+-|+++.--. ...|.+-+|+=+|.|+|..++.++++ . ...++.+|| T Consensus 73 ~~G~~L~LDg~~q~te~De~~YhE~l~h~pl-----~~~~~pk~VLIiGgGdG~~~rellk~----~----~v~~v~~VE 139 (314) T 2b2c_A 73 TYGNVLVLDGIVQATERDEFSYQEMLAHLPM-----FAHPDPKRVLIIGGGDGGILREVLKH----E----SVEKVTMCE 139 (314) T ss_dssp TTEEEEEETTEEEEESSSSSHHHHHHHHHHH-----HHSSSCCEEEEESCTTSHHHHHHTTC----T----TCCEEEEEC T ss_pred CCCCEEEECCEEEEECCCHHHHHHHHHHHHH-----HCCCCCCEEEEECCCCHHHHHHHHHC----C----CCCEEEEEE T ss_conf 8671899999304633758888998764786-----53999787999889846999999974----9----954589996 Q ss_pred CCHHHHHHHHHHHHH Q ss_conf 697899999864111 Q gi|254780410|r 118 TSERLTLIQKKQLAS 132 (362) Q Consensus 118 ~s~~l~~~Q~~~l~~ 132 (362) +.+...+.-++.++. T Consensus 140 ID~~Vi~~a~~~~~~ 154 (314) T 2b2c_A 140 IDEMVIDVAKKFLPG 154 (314) T ss_dssp SCHHHHHHHHHHCTT T ss_pred ECHHHHHHHHHHCHH T ss_conf 088999999763633 No 182 >2e58_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase, 2-codon SETS; HET: SAM; 2.50A {Aquifex aeolicus VF5} Probab=78.17 E-value=3.3 Score=19.97 Aligned_cols=91 Identities=18% Similarity=0.193 Sum_probs=55.3 Q ss_pred HHHCCCCCCCCC---CCC----CCC-CCCCEEECCCCCHHHHHHHHHHHHH--HHHHCCCCCCCEEEEECCCCHHHHHHH Q ss_conf 871089878646---898----888-8888645767117999999999999--999838887621410078646898887 Q gi|254780410|r 27 LCVADPEFGYYS---TCN----PFG-AVGDFVTAPEISQIFGEMLAIFLIC--AWEQHGFPSCVRLVELGPGRGIMMLDI 96 (362) Q Consensus 27 ~aLy~p~~GYY~---~~~----~~G-~~GDF~Tsp~is~~Fg~~ia~~~~~--~~~~~~~p~~~~ivE~GaG~G~La~di 96 (362) -.||+|+.+=+. +.+ -+. .-||.|-|..-+ ...|+...++.. +.+......+++|+|+|=|.|.=+.-. T Consensus 36 ~~~~~~~~~~~ei~~T~DGS~Tl~s~~f~E~YHS~~~G-Al~ES~~vFI~~~~l~~r~~~~~~i~ILEiGFGtGlN~l~t 114 (308) T 2e58_A 36 RFAYNPEESGQEIADTADGSKTLIHKTYGEPYHSQTAG-AIRESLYKFVRPSRILEKAKERKVIRILDVGFGLGYNLAVA 114 (308) T ss_dssp HHCCCTTCCCEEEEECTTSCEEEEETTTTEESSCTTTC-HHHHHHHHTHHHHTHHHHTTTCSEEEEEEECCTTSHHHHHH T ss_pred HHHCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCC-HHHHHHHHHHCCCCHHHHHCCCCCEEEEEECCCCCHHHHHH T ss_conf 87538454577458999998677357658866799876-89999998703577267753699719999566512899999 Q ss_pred HHHHHHCCHHHHHCCCEEEEECCH Q ss_conf 999974185643012102363697 Q gi|254780410|r 97 LRVICKLKPDFFSVLSIYMVETSE 120 (362) Q Consensus 97 L~~l~~~~p~~~~~l~~~ivE~s~ 120 (362) ++.+.+.+|. ..++|+-+|..+ T Consensus 115 l~~~~~~~~~--~~l~~isiE~~~ 136 (308) T 2e58_A 115 LKHLWEVNPK--LRVEIISFEKEL 136 (308) T ss_dssp HHHHHHHCTT--CEEEEEEEESSC T ss_pred HHHHHHHCCC--CCEEEEEHHHHH T ss_conf 9999973987--624886403879 No 183 >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A Probab=78.06 E-value=1.6 Score=22.22 Aligned_cols=75 Identities=12% Similarity=0.056 Sum_probs=51.7 Q ss_pred CCCC----CCCEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEE Q ss_conf 8888----888645767117999999999999999838887621410078646898887999974185643012102363 Q gi|254780410|r 42 PFGA----VGDFVTAPEISQIFGEMLAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVE 117 (362) Q Consensus 42 ~~G~----~GDF~Tsp~is~~Fg~~ia~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE 117 (362) .+|+ +|...|+ +--..+-|+++. ...+-+|.+-+|+-+|.|+|..++.++++ | .+..+|| T Consensus 38 ~~G~~l~Ldg~~~~~-~~~~~yhE~l~h-----~pl~~hp~pk~VLiIGgG~G~~~re~lk~-----~-----~~v~~VE 101 (262) T 2cmg_A 38 DFGEIAMLNRQLLFK-NFLHIESELLAH-----MGGCTKKELKEVLIVDGFDLELAHQLFKY-----D-----THIDFVQ 101 (262) T ss_dssp TTEEEEEETTEEEEG-GGTHHHHHHHHH-----HHHTTSSCCCEEEEESSCCHHHHHHHTTS-----S-----CEEEEEC T ss_pred CCCEEEEECCEEEEE-CCCCCCHHHHHH-----HHHHCCCCCCEEEEECCCCHHHHHHHHCC-----C-----CEEEEEE T ss_conf 862499998907664-243312287645-----78753998677999459966999998458-----9-----7479998 Q ss_pred CCHHHHHHHHHHHHH Q ss_conf 697899999864111 Q gi|254780410|r 118 TSERLTLIQKKQLAS 132 (362) Q Consensus 118 ~s~~l~~~Q~~~l~~ 132 (362) +.+...+.-++.++. T Consensus 102 iD~~Vi~~a~~~fp~ 116 (262) T 2cmg_A 102 ADEKILDSFISFFPH 116 (262) T ss_dssp SCHHHHGGGTTTSTT T ss_pred ECHHHHHHHHHHCCC T ss_conf 389999999986842 No 184 >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... Probab=77.54 E-value=0.92 Score=23.79 Aligned_cols=63 Identities=21% Similarity=0.244 Sum_probs=38.7 Q ss_pred HHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHCCCCHHC Q ss_conf 9999998388876214100786468988879999741856430121023636978999998641110231011 Q gi|254780410|r 67 LICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASYGDKINW 139 (362) Q Consensus 67 ~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~~~~v~w 139 (362) +.+... .+..+.-.++|+|+|.|.+. ++ ...+. .-+++.++.|+..++..++.+........| T Consensus 61 l~~~~~-~g~~~G~~lLDvG~Gpgi~~--~l----~a~~~---~~~I~~~D~s~~~~~~~~kw~~~~~~~~dw 123 (289) T 2g72_A 61 LAQTFA-TGEVSGRTLIDIGSGPTVYQ--LL----SACSH---FEDITMTDFLEVNRQELGRWLQEEPGAFNW 123 (289) T ss_dssp HHHHHH-TSCSCCSEEEEETCTTCCGG--GT----TGGGG---CSEEEEECSCHHHHHHHHHHHTTCTTCCCC T ss_pred HHHHHC-CCCCCCCEEEEECCCCCHHH--HH----HHCCC---CCEEEEECCCHHHHHHHHHHHHCCCCCCCC T ss_conf 999857-88878988999574713678--88----75646---781488549899999999887528776672 No 185 >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* Probab=75.55 E-value=3.9 Score=19.49 Aligned_cols=68 Identities=15% Similarity=0.076 Sum_probs=44.4 Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHH Q ss_conf 67117999999999999999838887621410078646898887999974185643012102363697899999864111 Q gi|254780410|r 53 PEISQIFGEMLAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLAS 132 (362) Q Consensus 53 p~is~~Fg~~ia~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~ 132 (362) ..+||.=|++|+. +-.+..|. .|+|+|.+.|.=+.-+.+.+. + .-+++.+|.++...+.-++.+.. T Consensus 61 m~i~~~~g~~L~~-----L~~~~~ak--~iLEIGT~~GySal~~a~al~----~---~g~l~tie~~~~~~~~Ar~~~~~ 126 (247) T 1sui_A 61 MTTSADEGQFLSM-----LLKLINAK--NTMEIGVYTGYSLLATALAIP----E---DGKILAMDINKENYELGLPVIKK 126 (247) T ss_dssp GSCCHHHHHHHHH-----HHHHTTCC--EEEEECCGGGHHHHHHHHHSC----T---TCEEEEEESCCHHHHHHHHHHHH T ss_pred CCCCHHHHHHHHH-----HHHHHCCC--EEEEEECCCCHHHHHHHHHCC----C---CCEEEEEECCHHHHHHHHHHHHH T ss_conf 6759999999999-----99864997--799963215899999998585----4---63699985177878999999986 Q ss_pred CC Q ss_conf 02 Q gi|254780410|r 133 YG 134 (362) Q Consensus 133 ~~ 134 (362) .+ T Consensus 127 ag 128 (247) T 1sui_A 127 AG 128 (247) T ss_dssp TT T ss_pred HH T ss_conf 20 No 186 >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} SCOP: c.66.1.47 PDB: 3k6r_A 3a25_A* 3a26_A* Probab=75.55 E-value=3 Score=20.30 Aligned_cols=44 Identities=14% Similarity=0.100 Sum_probs=33.5 Q ss_pred CEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHH Q ss_conf 21410078646898887999974185643012102363697899999864111 Q gi|254780410|r 80 VRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLAS 132 (362) Q Consensus 80 ~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~ 132 (362) -.|+++|||.|.++.-++.. ...+.+.+|.||...+.-++++.. T Consensus 127 ~~VlDl~aG~G~~~l~~a~~---------~~~~V~avD~n~~a~~~~~~N~~~ 170 (278) T 2frn_A 127 ELVVDMFAGIGHLSLPIAVY---------GKAKVIAIEKDPYTFKFLVENIHL 170 (278) T ss_dssp CEEEETTCTTTTTHHHHHHH---------TCCEEEEECCCHHHHHHHHHHHHH T ss_pred CEEEECCCCCCHHHHHHHHH---------CCCEEEEEECCHHHHHHHHHHHHH T ss_conf 88999177051999999997---------498699997999999999999998 No 187 >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* Probab=75.34 E-value=4 Score=19.46 Aligned_cols=78 Identities=23% Similarity=0.347 Sum_probs=51.8 Q ss_pred CCCC----CCCEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEE Q ss_conf 8888----888645767117999999999999999838887621410078646898887999974185643012102363 Q gi|254780410|r 42 PFGA----VGDFVTAPEISQIFGEMLAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVE 117 (362) Q Consensus 42 ~~G~----~GDF~Tsp~is~~Fg~~ia~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE 117 (362) .+|+ +|+.-++-.--..+-|+++.-- .+-.|.+-+++-+|.|+|..++.++++ | ...+..+|| T Consensus 60 ~~G~~L~LDg~~q~~e~de~~YhE~l~h~p-----l~~~~~pk~VLIiGgG~G~~~~ellk~-----~---~~~~v~~VE 126 (304) T 2o07_A 60 TYGNVLVLDGVIQCTERDEFSYQEMIANLP-----LCSHPNPRKVLIIGGGDGGVLREVVKH-----P---SVESVVQCE 126 (304) T ss_dssp SSCEEEEETTEEEEETTTHHHHHHHHHHHH-----HTTSSSCCEEEEEECTTSHHHHHHTTC-----T---TCCEEEEEE T ss_pred CCCEEEEECCCEEECCCCHHHHHHHHHHHH-----HHCCCCCCEEEEECCCCHHHHHHHHHC-----C---CCCEEEEEC T ss_conf 855199999930123564888889888799-----861999786999879945999999865-----9---853268760 Q ss_pred CCHHHHHHHHHHHHH Q ss_conf 697899999864111 Q gi|254780410|r 118 TSERLTLIQKKQLAS 132 (362) Q Consensus 118 ~s~~l~~~Q~~~l~~ 132 (362) +.+...+.-++.++. T Consensus 127 iD~~Vi~~a~~~~~~ 141 (304) T 2o07_A 127 IDEDVIQVSKKFLPG 141 (304) T ss_dssp SCHHHHHHHHHHCHH T ss_pred CCHHHHHHHHHHHHH T ss_conf 469999999985555 No 188 >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} Probab=72.21 E-value=4.7 Score=18.96 Aligned_cols=49 Identities=10% Similarity=0.122 Sum_probs=35.9 Q ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHH Q ss_conf 8887621410078646898887999974185643012102363697899999864111 Q gi|254780410|r 75 GFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLAS 132 (362) Q Consensus 75 ~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~ 132 (362) -.|. -.|+++|+|.|.++.-+++.. ....++.+|.||...+.-++++.. T Consensus 117 v~~g-e~VlDl~aG~G~~~i~~ak~~--------~~~~V~aiDinp~av~~l~~N~~~ 165 (272) T 3a27_A 117 SNEN-EVVVDMFAGIGYFTIPLAKYS--------KPKLVYAIEKNPTAYHYLCENIKL 165 (272) T ss_dssp CCTT-CEEEETTCTTTTTHHHHHHHT--------CCSEEEEEECCHHHHHHHHHHHHH T ss_pred CCCC-CEEEEECCCCCHHHHHHHHCC--------CCEEEEEEECCHHHHHHHHHHHHH T ss_conf 5899-999993786588999987506--------950999995999999999999998 No 189 >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} Probab=69.50 E-value=5.3 Score=18.56 Aligned_cols=65 Identities=20% Similarity=0.135 Sum_probs=38.9 Q ss_pred HHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHCC Q ss_conf 999999999999983888762141007864689888799997418564301210236369789999986411102 Q gi|254780410|r 60 GEMLAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASYG 134 (362) Q Consensus 60 g~~ia~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~~ 134 (362) ++.+......++.. +....-.|+++|.|+|+...-.+ .. ..-+++.||+|+.+.+.-+++....+ T Consensus 155 ~~~~~~r~~~~~~~-~~~~g~~vldlg~g~g~~l~~~l---~~------~~~~V~~vDi~~~~l~~a~~~a~~~g 219 (373) T 2qm3_A 155 PETTVARVILMHTR-GDLENKDIFVLGDDDLTSIALML---SG------LPKRIAVLDIDERLTKFIEKAANEIG 219 (373) T ss_dssp HHHHHHHHHHHHHT-TCSTTCEEEEESCTTCHHHHHHH---HT------CCSEEEEECSCHHHHHHHHHHHHHHT T ss_pred HHHHHHHHHHHHHC-CCCCCCEEEEEECCCHHHHHHHH---HC------CCCEEEEEECCHHHHHHHHHHHHHHC T ss_conf 88999999999863-77789979999799249999999---76------99989999797999999999999819 No 190 >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; 2.79A {Cyanidioschyzon merolae strain 10D} Probab=69.31 E-value=2.1 Score=21.38 Aligned_cols=64 Identities=13% Similarity=0.136 Sum_probs=33.8 Q ss_pred CCHHHHH-------HHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEEC-CHHHHHHH Q ss_conf 1179999-------999999999998388876214100786468988879999741856430121023636-97899999 Q gi|254780410|r 55 ISQIFGE-------MLAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVET-SERLTLIQ 126 (362) Q Consensus 55 is~~Fg~-------~ia~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~-s~~l~~~Q 126 (362) -+|++|. .+|.|+.+. -..-..-+|+|+|||.|-...-.. ... .-..++.+. .+.+.... T Consensus 52 ~~~~~g~~lW~aa~~La~~L~~~---~~~~~Gk~VLELGaGtGl~gl~aA----~~g-----a~~Vv~tD~~~~~~~~~l 119 (281) T 3bzb_A 52 EHPLWTSHVWSGARALADTLCWQ---PELIAGKTVCELGAGAGLVSIVAF----LAG-----ADQVVATDYPDPEILNSL 119 (281) T ss_dssp ----------CHHHHHHHHHHHC---GGGTTTCEEEETTCTTSHHHHHHH----HTT-----CSEEEEEECSCHHHHHHH T ss_pred CCCCCCEEEHHHHHHHHHHHHHC---HHHCCCCEEEEECCHHHHHHHHHH----HHC-----CCEEEEEECCCHHHHHHH T ss_conf 88865646567999999999839---233099829997855229999999----858-----987999976967889999 Q ss_pred HHHH Q ss_conf 8641 Q gi|254780410|r 127 KKQL 130 (362) Q Consensus 127 ~~~l 130 (362) +.++ T Consensus 120 ~~Nv 123 (281) T 3bzb_A 120 ESNI 123 (281) T ss_dssp HHHH T ss_pred HHHH T ss_conf 9999 No 191 >2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, joint center for structural genomics, JCSG; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56 Probab=69.22 E-value=5.4 Score=18.52 Aligned_cols=48 Identities=15% Similarity=0.216 Sum_probs=31.4 Q ss_pred CCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHH Q ss_conf 621410078646898887999974185643012102363697899999864111 Q gi|254780410|r 79 CVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLAS 132 (362) Q Consensus 79 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~ 132 (362) +-.+|++||..|.....++..... ...+++.+|++|...+..+++++. T Consensus 227 nevfIDVGAniG~~s~~f~~~~~~------~~~kV~AFEPnp~n~~~L~~Ni~~ 274 (409) T 2py6_A 227 SEKMVDCGASIGESLAGLIGVTKG------KFERVWMIEPDRINLQTLQNVLRR 274 (409) T ss_dssp SCEEEEETCTTSHHHHHHHHHHTS------CCSEEEEECCCHHHHHHHHHHHHH T ss_pred CCEEEECCCCCCHHHHHHHHHCCC------CCCEEEEEECCHHHHHHHHHHHHH T ss_conf 988999885888889999996689------999899994878999999999986 No 192 >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* Probab=63.86 E-value=6.8 Score=17.83 Aligned_cols=138 Identities=14% Similarity=0.127 Sum_probs=72.3 Q ss_pred CCHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHCC---CC Q ss_conf 984899999999981898049999998710898786468988888888645767117999999999999999838---88 Q gi|254780410|r 1 MENKLIRKIVNLIKKNGQMTVDQYFALCVADPEFGYYSTCNPFGAVGDFVTAPEISQIFGEMLAIFLICAWEQHG---FP 77 (362) Q Consensus 1 ~~~~L~~~i~~~I~~~G~i~f~~fM~~aLy~p~~GYY~~~~~~G~~GDF~Tsp~is~~Fg~~ia~~~~~~~~~~~---~p 77 (362) |++.-.+.+.+-+++-|.-.-++--+...|....--+.+... .||+.- .-+.+.+.+.+.+.-.. .+ T Consensus 10 ~~~~~~~~l~~~~~~lg~~~~~q~~~l~~y~~lL~~wN~~~N-------Lt~~~~---~~~~~~rHilDSl~i~~~~~~~ 79 (249) T 3g89_A 10 LSERGRALLLEGGKALGLDLKPHLEAFSRLYALLQEASGKVN-------LTALRG---EEEVVVKHFLDSLTLLRLPLWQ 79 (249) T ss_dssp CCHHHHHHHHHHHHHHTCCCGGGHHHHHHHHHHHHHC-----------------C---HHHHHHHHHHHHHGGGGSSCCC T ss_pred CCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCC-------CEECCC---HHHHHHHHHHHHHHHHHCCCCC T ss_conf 697899999999998399838999999999999998555532-------204589---8999999999999875314677 Q ss_pred CCCEEEEECCCCH--HHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHCCC-CHHCC-CCHHHCCC----- Q ss_conf 7621410078646--898887999974185643012102363697899999864111023-10110-43444456----- Q gi|254780410|r 78 SCVRLVELGPGRG--IMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASYGD-KINWY-TSLADVPL----- 148 (362) Q Consensus 78 ~~~~ivE~GaG~G--~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~~~-~v~w~-~~l~~~~~----- 148 (362) ..-+++++|+|.| -+...|+ .|+ .++++||.+..-....++...+++- .+.-+ ...+++.. T Consensus 80 ~~~~vlDiGSGaG~PGipLAI~------~p~----~~v~LvEs~~KK~~FL~~v~~~LgL~Nv~vi~~R~E~~~~~~~~~ 149 (249) T 3g89_A 80 GPLRVLDLGTGAGFPGLPLKIV------RPE----LELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHR 149 (249) T ss_dssp SSCEEEEETCTTTTTHHHHHHH------CTT----CEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTT T ss_pred CCCEEEECCCCCCCCEEEEEEE------CCC----CEEEEECCCHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCC T ss_conf 8978984269999640578783------698----329998082789999999999829998458877878704331235 Q ss_pred -CCEEEEEECC Q ss_conf -9569998122 Q gi|254780410|r 149 -GFTFLVANEF 158 (362) Q Consensus 149 -~~~iiiaNE~ 158 (362) ...+++|.-| T Consensus 150 ~~fD~v~aRAv 160 (249) T 3g89_A 150 EAYARAVARAV 160 (249) T ss_dssp TCEEEEEEESS T ss_pred CCCEEEEECCC T ss_conf 55005765552 No 193 >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A Probab=63.53 E-value=6.9 Score=17.79 Aligned_cols=63 Identities=19% Similarity=0.189 Sum_probs=37.2 Q ss_pred EECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEE--EEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEE Q ss_conf 457671179999999999999998388876214--10078646898887999974185643012102363 Q gi|254780410|r 50 VTAPEISQIFGEMLAIFLICAWEQHGFPSCVRL--VELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVE 117 (362) Q Consensus 50 ~Tsp~is~~Fg~~ia~~~~~~~~~~~~p~~~~i--vE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE 117 (362) +...+-..-||+.||..+.+. ...|..+.. =|+|||.=+|++.+++.+.-.. ...+-+|.+++ T Consensus 8 l~~e~~t~~lg~~la~~l~~~---~~~~g~ii~L~G~LGaGKTtf~r~i~~~lg~~~--~V~SPTF~l~~ 72 (158) T 1htw_A 8 IPDEFSMLRFGKKFAEILLKL---HTEKAIMVYLNGDLGAGKTTLTRGMLQGIGHQG--NVKSPTYTLVE 72 (158) T ss_dssp ECSHHHHHHHHHHHHHHHHHH---CCSSCEEEEEECSTTSSHHHHHHHHHHHTTCCS--CCCCCTTTCEE T ss_pred CCCHHHHHHHHHHHHHHHHHC---CCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCC--CCCCCCEEEEH T ss_conf 909999999999999998751---689984999988986889999999999827666--67898334100 No 194 >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, nucleus, phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} Probab=57.35 E-value=4.2 Score=19.25 Aligned_cols=22 Identities=18% Similarity=0.318 Sum_probs=17.4 Q ss_pred CCCCCCEEEEECCCCHHHHHHH Q ss_conf 8887621410078646898887 Q gi|254780410|r 75 GFPSCVRLVELGPGRGIMMLDI 96 (362) Q Consensus 75 ~~p~~~~ivE~GaG~G~La~di 96 (362) ..|....|+++|.|+|.++..+ T Consensus 64 ~~~~~~~IlDiGCG~G~~~~~l 85 (215) T 2zfu_A 64 QRPASLVVADFGCGDCRLASSI 85 (215) T ss_dssp TSCTTSCEEEETCTTCHHHHHC T ss_pred HCCCCCEEEEECCCCCHHHHHH T ss_conf 0668887998327833999863 No 195 >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} Probab=54.93 E-value=9.6 Score=16.82 Aligned_cols=160 Identities=13% Similarity=0.111 Sum_probs=73.9 Q ss_pred HHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHCC----CC---HH Q ss_conf 999999983888762141007864689888799997418564301210236369789999986411102----31---01 Q gi|254780410|r 66 FLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASYG----DK---IN 138 (362) Q Consensus 66 ~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~~----~~---v~ 138 (362) |+++.+++.+. -.|+++|-|.|.|...+++. |. ....+.-|++|...-++-+++|.... .+ +. T Consensus 712 aVl~iLr~~~a---kkVlDLGCGEGkLL~~LL~~-----~~--~iE~IvGVDIS~~~Le~A~~rL~~dl~~~r~r~~~V~ 781 (950) T 3htx_A 712 YALKHIRESSA---STLVDFGCGSGSLLDSLLDY-----PT--SLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSAT 781 (950) T ss_dssp HHHHHHHHSCC---SEEEEETCSSSHHHHHHTSS-----CC--CCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEE T ss_pred HHHHHHHHCCC---CEEEECCCCCCHHHHHHHCC-----CC--CEEEEEEEECCHHHHHHHHHHCCCCCCCCCCCCCEEE T ss_conf 99999987599---88997388870999998628-----76--6007999977999999998744841135445765689 Q ss_pred -CCCCHHHC---CCCCEEEEEECCCCCCCEEEEEEEC----CCCEEEEEEEE-ECCC--EEECCCCCCCCC---CCCCCC Q ss_conf -10434444---5695699981228875235899915----66468998996-0795--352257643432---234633 Q gi|254780410|r 139 -WYTSLADV---PLGFTFLVANEFFDSLPIKQFVMTE----HGIRERMIDID-QHDS--LVFNIGDHEIKS---NFLTCS 204 (362) Q Consensus 139 -w~~~l~~~---~~~~~iiiaNE~lDAlPv~~~~~~~----~~w~E~~V~~~-~~~~--~~~~~~~~~~~~---~~~~~~ 204 (362) |.-++.+. -.+...+++=|+.--|+-.+.-.-. +..+=+.|-+. .|-. ..|...+..... .-.... T Consensus 782 LyqGSIt~~D~RL~GfDAvV~iEVIEHLDpe~L~afe~vVFG~~rPkvVIVTTPNaEYNvlF~~l~~~~~~~~~~~p~~~ 861 (950) T 3htx_A 782 LYDGSILEFDSRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPKLLIVSTPNYEFNTILQRSTPETQEENNSEPQLP 861 (950) T ss_dssp EEESCTTSCCTTSCSCCEEEEESCGGGSCHHHHHHHHHHHHHTTCCSEEEEEECBGGGHHHHTCC------------CCS T ss_pred EEECCCCCCCCCCCCCCEEEEEEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHCCCCCCCCCCCCCCCCCCCC T ss_conf 99446555243104887699898750589889988999866315898699938971564365766777666555666667 Q ss_pred CCCCCC-EECCCHHH-HHHHHHHHHHHHHCCEEEEEE Q ss_conf 165684-11279347-899999999762057059996 Q gi|254780410|r 205 DYFLGA-IFENSPCR-DREMQSISDRLACDGGTAIVI 239 (362) Q Consensus 205 ~~~~g~-~~E~~~~~-~~~~~~i~~~l~~~~G~~L~i 239 (362) .+.+.+ ++|+.-.. ..|...++.+. |+-..| T Consensus 862 ~FRH~DHKFEWTRaEFq~WA~~VA~ry----gYsVeF 894 (950) T 3htx_A 862 KFRNHDHKFEWTREQFNQWASKLGKRH----NYSVEF 894 (950) T ss_dssp SCSCSSCSCCBCHHHHHHHHHHHHHHT----TEEEEE T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHH----CCEEEE T ss_conf 768898788759999999999999984----967999 No 196 >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 Probab=52.75 E-value=10 Score=16.59 Aligned_cols=68 Identities=15% Similarity=0.134 Sum_probs=43.5 Q ss_pred EECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHH Q ss_conf 45767117999999999999999838887621410078646898887999974185643012102363697899999864 Q gi|254780410|r 50 VTAPEISQIFGEMLAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQ 129 (362) Q Consensus 50 ~Tsp~is~~Fg~~ia~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~ 129 (362) .|=|..+.+=.. |-.++...+ ....++++.||+|.|...-|- + .+-+.++||.++...+..+++ T Consensus 32 ~~RPt~~~vrea-lFn~l~~~~------~~~~~LDLFaGSG~lglEAlS---R------GA~~v~fVE~~~~a~~~l~~N 95 (201) T 2ift_A 32 GLRPTGDRVKET-LFNWLMPYI------HQSECLDGFAGSGSLGFEALS---R------QAKKVTFLELDKTVANQLKKN 95 (201) T ss_dssp ------CHHHHH-HHHHHHHHH------TTCEEEETTCTTCHHHHHHHH---T------TCSEEEEECSCHHHHHHHHHH T ss_pred CCCCCCHHHHHH-HHHHHHHHC------CCCEEEECCCCCCHHHHHHHH---C------CCCEEEEEEECHHHHHHHHHH T ss_conf 968784899999-999877642------998799878882898999998---8------993999997405577899999 Q ss_pred HHHC Q ss_conf 1110 Q gi|254780410|r 130 LASY 133 (362) Q Consensus 130 l~~~ 133 (362) +... T Consensus 96 ~~~l 99 (201) T 2ift_A 96 LQTL 99 (201) T ss_dssp HHHT T ss_pred HHHH T ss_conf 9983 No 197 >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 2zzm_A* Probab=51.82 E-value=11 Score=16.49 Aligned_cols=16 Identities=6% Similarity=0.036 Sum_probs=8.3 Q ss_pred ECCCHHHHHHHHHHHH Q ss_conf 1279347899999999 Q gi|254780410|r 212 FENSPCRDREMQSISD 227 (362) Q Consensus 212 ~E~~~~~~~~~~~i~~ 227 (362) .|+++.+-.+++.-++ T Consensus 222 ~d~n~~a~~~~~~N~~ 237 (336) T 2yx1_A 222 IDINPHAIELLKKNIK 237 (336) T ss_dssp EESCHHHHHHHHHHHH T ss_pred EECCHHHHHHHHHHHH T ss_conf 9799999999999999 No 198 >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* Probab=51.07 E-value=11 Score=16.41 Aligned_cols=60 Identities=17% Similarity=-0.099 Sum_probs=39.8 Q ss_pred CCCCHHHHHHHHHHHHHHHHH-CCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHH Q ss_conf 671179999999999999998-388876214100786468988879999741856430121023636978999998641 Q gi|254780410|r 53 PEISQIFGEMLAIFLICAWEQ-HGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQL 130 (362) Q Consensus 53 p~is~~Fg~~ia~~~~~~~~~-~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l 130 (362) .+++|.. .+.|.+ ++.+..-.|+..|+|+|.-|.=+.+. -.+.+-||.|+...+.-++.. T Consensus 50 ~~~~p~L--------~~~~~~~~~~~~~~rvL~pgCG~G~da~~LA~~----------G~~V~gvD~S~~Ai~~a~~~~ 110 (252) T 2gb4_A 50 EQGHQLL--------KKHLDTFLKGQSGLRVFFPLCGKAIEMKWFADR----------GHTVVGVEISEIGIREFFAEQ 110 (252) T ss_dssp TTCCHHH--------HHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHT----------TCEEEEECSCHHHHHHHHHHT T ss_pred CCCCHHH--------HHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHC----------CCEEEEECCCHHHHHHHHHHC T ss_conf 8899899--------999998608899998999898780889999848----------984899816299999999875 No 199 >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protein structure initiative, midwest center for structural genomics; HET: MSE; 2.05A {Escherichia coli K12} SCOP: c.66.1.46 Probab=50.17 E-value=11 Score=16.32 Aligned_cols=68 Identities=18% Similarity=0.166 Sum_probs=42.3 Q ss_pred EEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHH Q ss_conf 64576711799999999999999983888762141007864689888799997418564301210236369789999986 Q gi|254780410|r 49 FVTAPEISQIFGEMLAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKK 128 (362) Q Consensus 49 F~Tsp~is~~Fg~~ia~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~ 128 (362) .-|=|..+.+= |+|-.++...+ ....++++.||+|.|...-|. + ..-+.++||.++...+..++ T Consensus 32 ~~~RPt~~rvr-ealFn~L~~~~------~~~~vLDLfaGsG~lgiEals---R------Ga~~v~fVE~~~~a~~~l~~ 95 (202) T 2fpo_A 32 PGLRPTTDRVR-ETLFNWLAPVI------VDAQCLDCFAGSGALGLEALS---R------YAAGATLIEMDRAVSQQLIK 95 (202) T ss_dssp ------CHHHH-HHHHHHHHHHH------TTCEEEETTCTTCHHHHHHHH---T------TCSEEEEECSCHHHHHHHHH T ss_pred CCCCCCCHHHH-HHHHHHHHHHC------CCCEEEECCCCCCHHHHHHHC---C------CCCEEEEEEECCCHHHHHHH T ss_conf 99687838999-99999866432------898699888785588999870---7------99886899970333567887 Q ss_pred HHHH Q ss_conf 4111 Q gi|254780410|r 129 QLAS 132 (362) Q Consensus 129 ~l~~ 132 (362) ++.. T Consensus 96 N~~~ 99 (202) T 2fpo_A 96 NLAT 99 (202) T ss_dssp HHHH T ss_pred HHHH T ss_conf 8987 No 200 >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 Probab=49.41 E-value=12 Score=16.24 Aligned_cols=74 Identities=12% Similarity=0.294 Sum_probs=41.8 Q ss_pred HHHHHHHHHHHCCCCCCCEEEEECCCCHH--HHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHCC-CCHHC Q ss_conf 99999999998388876214100786468--9888799997418564301210236369789999986411102-31011 Q gi|254780410|r 63 LAIFLICAWEQHGFPSCVRLVELGPGRGI--MMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASYG-DKINW 139 (362) Q Consensus 63 ia~~~~~~~~~~~~p~~~~ivE~GaG~G~--La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~~-~~v~w 139 (362) +.+.+.+.+.-......-.++++|.|.|- +...|+ .|+ .++++||++..-....++...+++ ..|.. T Consensus 50 ~~~Hi~DSl~~~~~~~~~~ilDiGsGaG~PGi~laI~------~p~----~~~~Lve~~~Kk~~fL~~~~~~L~L~nv~v 119 (207) T 1jsx_A 50 LVRHILDSIVVAPYLQGERFIDVGTGPGLPGIPLSIV------RPE----AHFTLLDSLGKRVRFLRQVQHELKLENIEP 119 (207) T ss_dssp HHHHHHHHHHHGGGCCSSEEEEETCTTTTTHHHHHHH------CTT----SEEEEEESCHHHHHHHHHHHHHTTCSSEEE T ss_pred HHHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHH------CCC----CEEEEEECHHHHHHHHHHHHHHCCCCCCEE T ss_conf 9999999998876423887986169986154789874------885----089997065889999999999739987304 Q ss_pred C-CCHHHC Q ss_conf 0-434444 Q gi|254780410|r 140 Y-TSLADV 146 (362) Q Consensus 140 ~-~~l~~~ 146 (362) + ...++. T Consensus 120 ~~~R~e~~ 127 (207) T 1jsx_A 120 VQSRVEEF 127 (207) T ss_dssp EECCTTTS T ss_pred EEEHHHHC T ss_conf 52134531 No 201 >2ofk_A 3-methyladenine DNA glycosylase I, constitutive; DNA repair, base excision, helix-hairpin-helix, hydrolase; HET: PGE; 1.50A {Salmonella typhi} PDB: 2ofi_A* 1lmz_A 1nku_A 1p7m_A* Probab=48.71 E-value=7.9 Score=17.39 Aligned_cols=31 Identities=16% Similarity=0.140 Sum_probs=27.8 Q ss_pred CHHHHHHHHHHCCCEEECCEEHHHHHHHCCH Q ss_conf 8899999999689836332338999997897 Q gi|254780410|r 277 DFQRLSSIAILYKLYINGLTTQGKFLEGLGI 307 (362) Q Consensus 277 nFs~L~~~a~~~g~~~~g~~sQ~~FL~~~GI 307 (362) .-.++.+..++.|++.+|+++...||.+.|+ T Consensus 141 ~s~~lsk~LKkrGFkfvGpt~~ysfmqA~G~ 171 (183) T 2ofk_A 141 ASDALAKALKKRGFKFVGTTICYSFMQACGL 171 (183) T ss_dssp HHHHHHHHHHHTTCCSCCHHHHHHHHHHTTS T ss_pred HHHHHHHHHHHCCCEEECHHHHHHHHHHCCC T ss_conf 9999999999677843166999999998699 No 202 >1kyz_A COMT, caffeic acid 3-O-methyltransferase; lignin, ferulic acid, methylation; HET: SAH FER; 2.20A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1kyw_A* Probab=43.22 E-value=14 Score=15.61 Aligned_cols=60 Identities=17% Similarity=0.251 Sum_probs=35.1 Q ss_pred CCCCCHHHHHHHHHH---HHH-HHHHCCC-CCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECC Q ss_conf 767117999999999---999-9998388-8762141007864689888799997418564301210236369 Q gi|254780410|r 52 APEISQIFGEMLAIF---LIC-AWEQHGF-PSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETS 119 (362) Q Consensus 52 sp~is~~Fg~~ia~~---~~~-~~~~~~~-p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s 119 (362) .|+....|....+.+ ... ++..... +..-.||++|.|+|.++..+++. .|+ ++..+++.. T Consensus 169 ~p~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~----~P~----l~~~~~Dlp 233 (365) T 1kyz_A 169 DPRFNKVFNKGMSDHSTITMKKILETYTGFEGLKSLVDVGGGTGAVINTIVSK----YPT----IKGINFDLP 233 (365) T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCSEEEEETCTTSHHHHHHHHH----CTT----SEEEEEECT T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHH----CCC----CEEEECCCH T ss_conf 99999999988777666589999975774348717998258973898889987----998----069974481 No 203 >1gjy_A Sorcin, CP-22, V19; calcium binding, calcium-binding, phosphorylation; 2.2A {Chinese hamster} SCOP: a.39.1.8 Probab=43.12 E-value=14 Score=15.66 Aligned_cols=13 Identities=23% Similarity=0.445 Sum_probs=6.6 Q ss_pred HCCCCCHHHHHHH Q ss_conf 1898049999998 Q gi|254780410|r 15 KNGQMTVDQYFAL 27 (362) Q Consensus 15 ~~G~i~f~~fM~~ 27 (362) .+|.|+..++.+. T Consensus 14 ~dG~I~~~EL~~~ 26 (167) T 1gjy_A 14 QDGQIDADELQRC 26 (167) T ss_dssp TTSCBCHHHHHHH T ss_pred CCCCCCHHHHHHH T ss_conf 8997869999999 No 204 >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca YX} Probab=38.85 E-value=17 Score=15.17 Aligned_cols=46 Identities=17% Similarity=0.307 Sum_probs=34.1 Q ss_pred EEEEECCCCHHH--HHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHC Q ss_conf 141007864689--88879999741856430121023636978999998641110 Q gi|254780410|r 81 RLVELGPGRGIM--MLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLASY 133 (362) Q Consensus 81 ~ivE~GaG~G~L--a~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~~ 133 (362) +++++|.|-|+. ...++ ....|+ .+++-|+.||.....-+.++... T Consensus 80 qfLDlGcG~gt~~~~he~a---~~~~P~----arVv~vD~dp~~la~ara~l~~~ 127 (274) T 2qe6_A 80 QFLDLGSGLPTVQNTHEVA---QSVNPD----ARVVYVDIDPMVLTHGRALLAKD 127 (274) T ss_dssp EEEEETCCSCCSSCHHHHH---HHHCTT----CEEEEEESSHHHHHHHHHHHTTC T ss_pred EEEEECCCCCCCCHHHHHH---HHHCCC----CEEEEEECCHHHHHHHHHHHCCC T ss_conf 8999473889864199999---987899----77999959788999987650479 No 205 >1k94_A Grancalcin; penta-EF-hand protein, calcium binding protein, metal binding protein; 1.70A {Homo sapiens} SCOP: a.39.1.8 PDB: 1k95_A 1f4q_A 1f4o_A Probab=36.76 E-value=18 Score=14.95 Aligned_cols=12 Identities=8% Similarity=0.415 Sum_probs=6.3 Q ss_pred HCCCCCHHHHHH Q ss_conf 189804999999 Q gi|254780410|r 15 KNGQMTVDQYFA 26 (362) Q Consensus 15 ~~G~i~f~~fM~ 26 (362) ++|.|+..++.+ T Consensus 12 ~dg~I~~~EL~~ 23 (165) T 1k94_A 12 QDGEVDAEELQR 23 (165) T ss_dssp GGTSBCHHHHHH T ss_pred CCCCCCHHHHHH T ss_conf 899798999999 No 206 >3mag_A VP39; methylated adenine, methyltransferase, RNA CAP analog, poly (A) polymerase, mRNA processing, transcription; HET: SAH 3MA; 1.80A {Vaccinia virus} SCOP: c.66.1.25 PDB: 1bky_A* 1jsz_A* 1v39_A* 1p39_A* 1vp9_A* 2vp3_A* 1eam_A* 1jte_A* 1jtf_A* 4dcg_A* 3mct_A* 1b42_A* 1eqa_A* 1av6_A* 3er9_A* 2gaf_A 3er8_A 2ga9_A* 3erc_A* Probab=36.43 E-value=18 Score=14.92 Aligned_cols=52 Identities=13% Similarity=0.333 Sum_probs=33.6 Q ss_pred HHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCH Q ss_conf 99999999838887621410078646898887999974185643012102363697 Q gi|254780410|r 65 IFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSE 120 (362) Q Consensus 65 ~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~ 120 (362) .++...+...+.-+..+||=+|||.|+=. ..|.+..|+.....+.+++++.+ T Consensus 47 i~FLs~~~~~~~~~~~~VVYiGsApG~Hi----~~L~~~f~~l~~~ikw~LiDP~~ 98 (307) T 3mag_A 47 LFFLSKLQRHGILDGATVVYIGSAPGTHI----RYLRDHFYNLGVIIKWMLIDGRH 98 (307) T ss_dssp HHHHHHHHHTTCSTTCEEEEESCCSCHHH----HHHHHHHHHTTCCCEEEEEESSC T ss_pred HHHHHHHHHCCCCCCCEEEEECCCCCCHH----HHHHHHHHHHCCCEEEEEECCCC T ss_conf 99999875347777767999465898547----99999728748760699988987 No 207 >1vpt_A VP39; RNA CAP, poly(A) polymerase, methyltransferase; HET: SAM; 1.80A {Vaccinia virus WR} SCOP: c.66.1.25 PDB: 1vp3_A* Probab=35.19 E-value=19 Score=14.78 Aligned_cols=52 Identities=13% Similarity=0.333 Sum_probs=33.5 Q ss_pred HHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCH Q ss_conf 99999999838887621410078646898887999974185643012102363697 Q gi|254780410|r 65 IFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSE 120 (362) Q Consensus 65 ~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~ 120 (362) .++...+...+.-...+||=+|||.|+=. ..|.+..|+....++.+++++.+ T Consensus 62 I~FLs~~~~~~~~~~~~VVYiGSAPG~HI----~fL~~lf~~l~~~ikWvLiDP~~ 113 (348) T 1vpt_A 62 LFFLSKLQRHGILDGATVVYIGSAPGTHI----RYLRDHFYNLGVIIKWMLIDGRH 113 (348) T ss_dssp HHHHHHHHHTTCSTTCEEEEESCSSCHHH----HHHHHHHHHTTCCCEEEEEESSC T ss_pred HHHHHHHHHCCCCCCCEEEEECCCCCCHH----HHHHHHHHHHCCCEEEEEECCCC T ss_conf 99999875436778758999475897467----99999748618762899988987 No 208 >2jg6_A DNA-3-methyladenine glycosidase; 3-methyladenine-DNA-glycosylase-I, hydrolase; 1.70A {Staphylococcus aureus} Probab=34.13 E-value=17 Score=15.11 Aligned_cols=29 Identities=31% Similarity=0.314 Sum_probs=26.4 Q ss_pred HHHHHHHHHCCCEEECCEEHHHHHHHCCH Q ss_conf 99999999689836332338999997897 Q gi|254780410|r 279 QRLSSIAILYKLYINGLTTQGKFLEGLGI 307 (362) Q Consensus 279 s~L~~~a~~~g~~~~g~~sQ~~FL~~~GI 307 (362) .++.+..++.|++.+|+++=..||.+.|+ T Consensus 143 ~~isk~LKk~GFkfvGpt~~ysfmqA~G~ 171 (186) T 2jg6_A 143 TQLSKDLKQYGFKFLGPVTVFSFLEAAGL 171 (186) T ss_dssp HHHHHHHHTTTCCSCCHHHHHHHHHHTTS T ss_pred HHHHHHHHHCCCEECCCHHHHHHHHHCCC T ss_conf 99999998678744385799999997699 No 209 >3cvo_A Methyltransferase-like protein of unknown function; YP_167254.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} Probab=29.14 E-value=24 Score=14.12 Aligned_cols=42 Identities=21% Similarity=0.279 Sum_probs=27.9 Q ss_pred CEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHH Q ss_conf 21410078646898887999974185643012102363697899999864111 Q gi|254780410|r 80 VRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKKQLAS 132 (362) Q Consensus 80 ~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~~l~~ 132 (362) -.++|+|+|.-|+... + .+ .-+++.||.++...+.-++.+.. T Consensus 32 ~~iLE~GSGgST~~~a------~-~~----~~~I~SVE~d~~W~~~v~~~l~~ 73 (202) T 3cvo_A 32 EVILEYGSGGSTVVAA------E-LP----GKHVTSVESDRAWARMMKAWLAA 73 (202) T ss_dssp SEEEEESCSHHHHHHH------T-ST----TCEEEEEESCHHHHHHHHHHHHH T ss_pred CEEEEECCCHHHHHHH------H-CC----CCEEEEECCCHHHHHHHHHHHHH T ss_conf 9999968989899999------8-17----98089967999999999998654 No 210 >2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus} Probab=29.04 E-value=20 Score=14.60 Aligned_cols=11 Identities=27% Similarity=0.486 Sum_probs=5.3 Q ss_pred EECCEEHHHHH Q ss_conf 63323389999 Q gi|254780410|r 292 INGLTTQGKFL 302 (362) Q Consensus 292 ~~g~~sQ~~FL 302 (362) .+|++|--+|| T Consensus 6 SDGpvt~qEyl 16 (63) T 2w6a_A 6 SDGAVTLQEYL 16 (63) T ss_dssp -CCSSCHHHHH T ss_pred CCCCCCHHHHH T ss_conf 99961199999 No 211 >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant protein; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* Probab=28.55 E-value=24 Score=14.06 Aligned_cols=31 Identities=26% Similarity=0.367 Sum_probs=22.8 Q ss_pred CEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEEC Q ss_conf 214100786468988879999741856430121023636 Q gi|254780410|r 80 VRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVET 118 (362) Q Consensus 80 ~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~ 118 (362) -.+|++|+|.|.++..+++. .|+ ++..+.+. T Consensus 195 ~~vvDvGGG~G~~~~~l~~~----~P~----l~~~v~Dl 225 (358) T 1zg3_A 195 ESLVDVGGGTGGVTKLIHEI----FPH----LKCTVFDQ 225 (358) T ss_dssp SEEEEETCTTSHHHHHHHHH----CTT----SEEEEEEC T ss_pred CEEEEECCCCHHHHHHHHHH----CCC----CCEEEECC T ss_conf 56998089853999999986----899----76278417 No 212 >1fp2_A Isoflavone O-methytransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* Probab=27.55 E-value=25 Score=13.94 Aligned_cols=33 Identities=21% Similarity=0.324 Sum_probs=23.9 Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEEC Q ss_conf 76214100786468988879999741856430121023636 Q gi|254780410|r 78 SCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVET 118 (362) Q Consensus 78 ~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~ 118 (362) ..-.++++|.|.|.++..+++. .|+ ++.++.+. T Consensus 188 ~~~~vlDvGGG~G~~~~~l~~~----~P~----l~~~v~Dl 220 (352) T 1fp2_A 188 GLESIVDVGGGTGTTAKIICET----FPK----LKCIVFDR 220 (352) T ss_dssp TCSEEEEETCTTSHHHHHHHHH----CTT----CEEEEEEC T ss_pred CCEEEEEECCCCCHHHHHHHHH----CCC----CEEEEEEC T ss_conf 8718986058861889999975----899----75999417 No 213 >1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19 Probab=26.90 E-value=20 Score=14.58 Aligned_cols=28 Identities=18% Similarity=0.171 Sum_probs=15.0 Q ss_pred CCCEEECCCCCHHHH---HHHHHHHHHHHHH Q ss_conf 888645767117999---9999999999998 Q gi|254780410|r 46 VGDFVTAPEISQIFG---EMLAIFLICAWEQ 73 (362) Q Consensus 46 ~GDF~Tsp~is~~Fg---~~ia~~~~~~~~~ 73 (362) .|+|+||.+||.-.+ .-|-+|+..+|++ T Consensus 26 ~~~~iTAi~Is~kL~i~K~~INrQLYkL~~e 56 (75) T 1sfu_A 26 TNDYTTAISLSNRLKINKKKINQQLYKLQKE 56 (75) T ss_dssp TTCEECHHHHHHHTTCCHHHHHHHHHHHHHT T ss_pred CCCCCHHHHHHHHHCCHHHHHHHHHHHHHHC T ss_conf 5442219999988630087888999999868 No 214 >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* Probab=25.76 E-value=27 Score=13.73 Aligned_cols=59 Identities=19% Similarity=0.159 Sum_probs=32.4 Q ss_pred CCCCCHHHHHHHHHH---HHH-HHHHCCC-CCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEEC Q ss_conf 767117999999999---999-9998388-876214100786468988879999741856430121023636 Q gi|254780410|r 52 APEISQIFGEMLAIF---LIC-AWEQHGF-PSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVET 118 (362) Q Consensus 52 sp~is~~Fg~~ia~~---~~~-~~~~~~~-p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~ 118 (362) .|+....|...++.+ ... +...... +..-.++++|.|.|.++..+++. .|+ ++.++.+. T Consensus 178 ~~~~~~~f~~~M~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~----~P~----l~~~~~Dl 241 (372) T 1fp1_D 178 DKKMNQIFNKSMVDVCATEMKRMLEIYTGFEGISTLVDVGGGSGRNLELIISK----YPL----IKGINFDL 241 (372) T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHH----CTT----CEEEEEEC T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHH----CCC----CEEEEEEC T ss_conf 99999999998888787799999986564347867998079841899999997----899----74999716 No 215 >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Probab=25.39 E-value=28 Score=13.68 Aligned_cols=79 Identities=19% Similarity=0.193 Sum_probs=40.5 Q ss_pred CCCCCHH-HHHHHH--HHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHH Q ss_conf 7671179-999999--9999999983888762141007864689888799997418564301210236369789999986 Q gi|254780410|r 52 APEISQI-FGEMLA--IFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQKK 128 (362) Q Consensus 52 sp~is~~-Fg~~ia--~~~~~~~~~~~~p~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~~l~~~Q~~ 128 (362) ||.|..= +-++.| .-+.+++++.....+.+||-+|||.=+|...++..-..........+.|+=|+-.. +.++-.+ T Consensus 78 ~PlInrGy~~R~~ai~~~v~~fl~~~~~~~~~qiv~LGaG~Dt~~frl~~~~~~~~~~~~~~~~~~evD~~~-~~~~K~~ 156 (695) T 2zwa_A 78 SPCINRGYWLRLFAIRSRLNSIIEQTPQDKKIVVVNLGCGYDPLPFQLLDTNNIQSQQYHDRVSFIDIDYSD-LLKIKIE 156 (695) T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHSCTTSEEEEEEETCTTCCHHHHHHCTTCGGGGGGSSSEEEEEEECHH-HHHHHHH T ss_pred CCEECCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCEEEECCCHH-HHHHHHH T ss_conf 852110354999999999999998587788868999384756077785255776444457887799895499-9999999 Q ss_pred HHH Q ss_conf 411 Q gi|254780410|r 129 QLA 131 (362) Q Consensus 129 ~l~ 131 (362) .+. T Consensus 157 ~i~ 159 (695) T 2zwa_A 157 LIK 159 (695) T ss_dssp HHH T ss_pred HHH T ss_conf 997 No 216 >3k89_A Malonyl COA-ACP transacylase; bacterial blight, XOO0880, FABD, xanthomonas oryzae PV. oryzae KACC10331; 1.60A {Xanthomonas oryzae PV} PDB: 3een_A Probab=25.24 E-value=26 Score=13.86 Aligned_cols=27 Identities=11% Similarity=-0.038 Sum_probs=20.4 Q ss_pred CCCCCCCHHHHHHHHHHCCCEE---ECCEE Q ss_conf 4531268899999999689836---33233 Q gi|254780410|r 271 DLSSHVDFQRLSSIAILYKLYI---NGLTT 297 (362) Q Consensus 271 DITahVnFs~L~~~a~~~g~~~---~g~~s 297 (362) -++.-|+|....+...+.|... +|+.+ T Consensus 252 ql~~pV~f~~~i~~l~~~g~~~fvEiGP~~ 281 (314) T 3k89_A 252 QLYLPVQWTGCVQALASQGITRIAECGPGK 281 (314) T ss_dssp HHHSCEEHHHHHHHHHHTTCCEEEECSSSS T ss_pred HCCCCCCHHHHHHHHHHCCCCEEEECCCCH T ss_conf 656754699999999977999999919818 No 217 >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 Probab=23.22 E-value=30 Score=13.41 Aligned_cols=54 Identities=17% Similarity=0.138 Sum_probs=20.2 Q ss_pred CCCCCCCCCCCCCCCEEE-CC--CCC-HHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCH Q ss_conf 786468988888888645-76--711-7999999999999999838887621410078646 Q gi|254780410|r 34 FGYYSTCNPFGAVGDFVT-AP--EIS-QIFGEMLAIFLICAWEQHGFPSCVRLVELGPGRG 90 (362) Q Consensus 34 ~GYY~~~~~~G~~GDF~T-sp--~is-~~Fg~~ia~~~~~~~~~~~~p~~~~ivE~GaG~G 90 (362) .|||..+.+|- +-.+| .+ .+. .+|-+-|...+..-.........+.++- |-|+| T Consensus 51 ~G~~n~~s~i~--~R~ls~~~~~~~~~~~~~~ri~~A~~~R~~~~~~t~~yRl~~-ge~D~ 108 (396) T 2as0_A 51 KGFANPNSNIM--VRIVTKDKDVEINKDLFKRRIKKANEYRKKVLKYTNVYRMVY-GEADY 108 (396) T ss_dssp EEEECTTSSEE--EEEEESCTTCCCSHHHHHHHHHHHHHHHHHTSCCCSEEEEEE-GGGGT T ss_pred EEEECCCCCEE--EEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEE-CCCCC T ss_conf 99988999879--999888988775899999999999999997535798268880-35788 No 218 >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* Probab=22.77 E-value=31 Score=13.35 Aligned_cols=38 Identities=13% Similarity=-0.010 Sum_probs=20.3 Q ss_pred CCEEEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEEECCH Q ss_conf 621410078646898887999974185643012102363697 Q gi|254780410|r 79 CVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSE 120 (362) Q Consensus 79 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~l~~~ivE~s~ 120 (362) +-.|+|+|-..|.=+.=+...++...+ ..+++-+++.+ T Consensus 82 Pk~ILEIG~~~GgS~~~~a~~l~~~~~----~~~I~~iDId~ 119 (236) T 2bm8_A 82 PRTIVELGVYNGGSLAWFRDLTKIMGI----DCQVIGIDRDL 119 (236) T ss_dssp CSEEEEECCTTSHHHHHHHHHHHHTTC----CCEEEEEESCC T ss_pred CCEEEEEECCCCHHHHHHHHHHHHCCC----CCEEEEECCCH T ss_conf 798999738808259999999974578----84599733665 No 219 >2qc3_A MCT, malonyl COA-acyl carrier protein transacylase; malonyl-COA:ACP transacylase, , nucleophilic attack; 2.30A {Mycobacterium tuberculosis H37RV} PDB: 2qj3_A Probab=22.75 E-value=28 Score=13.62 Aligned_cols=22 Identities=9% Similarity=0.033 Sum_probs=17.8 Q ss_pred CCCCCCCHHHHHHHHHHCCCEE Q ss_conf 4531268899999999689836 Q gi|254780410|r 271 DLSSHVDFQRLSSIAILYKLYI 292 (362) Q Consensus 271 DITahVnFs~L~~~a~~~g~~~ 292 (362) -++.-|+|....+.+.+.|.+. T Consensus 244 ~l~~pV~f~~~i~~l~~~g~~~ 265 (303) T 2qc3_A 244 QLTQPVRWDLCTATLREHTVTA 265 (303) T ss_dssp GGGSCEEHHHHHHHHHHTTEEE T ss_pred HCCCCCCHHHHHHHHHHCCCCE T ss_conf 7338715999999999779999 No 220 >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus HB8} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* Probab=22.59 E-value=31 Score=13.33 Aligned_cols=19 Identities=5% Similarity=-0.118 Sum_probs=9.4 Q ss_pred HHHHHHHHHHHCCCCCHHH Q ss_conf 9999999998189804999 Q gi|254780410|r 5 LIRKIVNLIKKNGQMTVDQ 23 (362) Q Consensus 5 L~~~i~~~I~~~G~i~f~~ 23 (362) |..+-.+++..+-|.-|+. T Consensus 5 ~~~~~~~~~~~ghPWvy~~ 23 (382) T 1wxx_A 5 VNAKGAARLLSRHLWVFRR 23 (382) T ss_dssp ECHHHHHHHHTTCCEECGG T ss_pred ECCCHHHHHHCCCCEEECC T ss_conf 9821677875899986487 No 221 >2kax_A Protein S100-A5; EF-hand, calcium binding protien, calcium, polymorphism, structural genomics, spine2, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 2kay_A Probab=21.52 E-value=33 Score=13.18 Aligned_cols=13 Identities=23% Similarity=0.529 Sum_probs=9.0 Q ss_pred CCHHHHHHHHHHH Q ss_conf 9848999999999 Q gi|254780410|r 1 MENKLIRKIVNLI 13 (362) Q Consensus 1 ~~~~L~~~i~~~I 13 (362) |+|+|.+-|...+ T Consensus 1 m~t~lE~ai~~l~ 13 (92) T 2kax_A 1 METPLEKALTTMV 13 (92) T ss_dssp CCCHHHHHHHHHH T ss_pred CCCHHHHHHHHHH T ss_conf 9988999999999 No 222 >2ec1_A Nucleoporin 50 kDa; ranbp domain, nuclear pore-associated protein 60 kDa-like, structural genomics, NPPSFA; NMR {Homo sapiens} Probab=21.46 E-value=33 Score=13.18 Aligned_cols=18 Identities=22% Similarity=0.338 Sum_probs=15.6 Q ss_pred EEEEEEECCCCEEEEEEE Q ss_conf 358999156646899899 Q gi|254780410|r 164 IKQFVMTEHGIRERMIDI 181 (362) Q Consensus 164 v~~~~~~~~~w~E~~V~~ 181 (362) ++.|++.++.|.|++|+. T Consensus 20 aKLy~~~~~~WkERG~G~ 37 (125) T 2ec1_A 20 CKLFYKKDNEFKEKGIGT 37 (125) T ss_dssp EEEEEECSSSEEEEEEEE T ss_pred EEEEEECCCCEEECCEEE T ss_conf 799998699826532889 No 223 >2kvs_A Uncharacterized protein MW0776; PSI-2, NESG, BIG target, structural genomics, protein structure initiative; NMR {Staphylococcus aureus} Probab=21.26 E-value=22 Score=14.34 Aligned_cols=13 Identities=15% Similarity=0.148 Sum_probs=10.3 Q ss_pred HCCCCCHHHHHHH Q ss_conf 1898049999998 Q gi|254780410|r 15 KNGQMTVDQYFAL 27 (362) Q Consensus 15 ~~G~i~f~~fM~~ 27 (362) ++.|+||.+||+- T Consensus 2 ~~~~MSFYdFiq~ 14 (80) T 2kvs_A 2 AGDPMTFYNFIMG 14 (80) T ss_dssp CCCCCHHHHHHTT T ss_pred CCCCCCHHHHHHH T ss_conf 9885409999985 Done!