RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780410|ref|YP_003064823.1| hypothetical protein
CLIBASIA_01475 [Candidatus Liberibacter asiaticus str. psy62]
         (362 letters)



>gnl|CDD|31753 COG1565, COG1565, Uncharacterized conserved protein [Function
           unknown].
          Length = 370

 Score =  305 bits (783), Expect = 1e-83
 Identities = 138/366 (37%), Positives = 200/366 (54%), Gaps = 19/366 (5%)

Query: 8   KIVNLIKKNGQMTVDQYFALCVADPEFGYYSTCNPFGAVGDFVTAPEISQIFGEMLAIFL 67
            I  LI + G ++   +  L + DPE GYYS+    G  GDF+TAPE+SQ+FGE+LA   
Sbjct: 7   IIRALIAQGGPISFSDFMELALYDPEHGYYSSAVKIGRKGDFITAPELSQLFGELLAEQF 66

Query: 68  ICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERLTLIQK 127
           +  W++ G P+ ++LVE+G GRG +  DILR + +L P+ +  LS Y++E S  L   QK
Sbjct: 67  LQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQK 126

Query: 128 KQLASYGDKINWYTSLADVPLGFT-FLVANEFFDSLPIKQFVMTEHGIRERMIDIDQHDS 186
           + L +  D I W   + D+P  F   +V+NE FD+LP++QF+ T+    ER++ +D    
Sbjct: 127 ETLKATEDLIRWVEWVEDLPKKFPGIVVSNELFDALPVEQFIRTKGLFVERVVVLDAEGR 186

Query: 187 LVFNIGDHEIKSNFLTCSD---YFLGAIFENSPCRDREMQSISDRLACDGGTAIVIDYGY 243
           LVF+   +E+    L   D      G I E SP R+  +++I++RL    G  + IDYGY
Sbjct: 187 LVFSHAINELIDEALLPLDAPEAEDGYILEVSPAREALLKAIAERLE--RGVFLFIDYGY 244

Query: 244 L-------QSRVGDTLQAVKGHTYVSPLVNPGQADLSSHVDFQRLSSIAILYKLYINGLT 296
                   +   G TLQA + H +  PL NPG ADL++HVDF  L+  A    L + G  
Sbjct: 245 PAEEYYHPRRAYGTTLQAYRHHVHDDPLANPGLADLTAHVDFTALAKAAKAAGLEVLGFK 304

Query: 297 TQGKFLEGLGIWQRAFSLMKQT--ARKDILLDSVKRLVSTSADKKSMGELFKILVVSHEK 354
           TQG FL  LG+ +R  +L      AR   +   VKRL         MGELFK+L    + 
Sbjct: 305 TQGDFLLDLGLLERLATLSAGKDDARYLKIAAQVKRL----ISPGGMGELFKVLAFGKKL 360

Query: 355 VELMPF 360
              +PF
Sbjct: 361 KIDLPF 366


>gnl|CDD|38112 KOG2901, KOG2901, KOG2901, Uncharacterized conserved protein
           [Function unknown].
          Length = 415

 Score =  253 bits (648), Expect = 5e-68
 Identities = 128/364 (35%), Positives = 194/364 (53%), Gaps = 27/364 (7%)

Query: 3   NKLIRKIVNLIKKNGQMTVDQYFALCVADPEFGYYSTCNPFGAVGDFVTAPEISQIFGEM 62
             L++ + + IK  G +TV +Y    + +P+ GYY   + FGA GDF+T+PEISQIFGEM
Sbjct: 33  PHLVKHLKSKIKSTGPITVAEYMKEVLTNPKAGYYMNRDVFGAKGDFITSPEISQIFGEM 92

Query: 63  LAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSERL 122
           + ++ +  WEQ G P   +LVELGPGRG +M D+LRV+ K K +  SV   ++VE S  L
Sbjct: 93  IGVWTVSEWEQMGRPERFQLVELGPGRGTLMADVLRVLTKFKDEDLSV---HLVEVSPAL 149

Query: 123 TLIQKKQLASY--------------GDKINWYTSLADVPLGFTFLVANEFFDSLPIKQFV 168
           + +Q + L                 G  I+W+ +L DVP GFT ++A+EFFD+LP+ QF 
Sbjct: 150 SKLQAQNLCCTDESLSEYKKGSTLSGTPIHWHRTLQDVPSGFTLIIAHEFFDALPVHQFQ 209

Query: 169 MTEHGIRERMIDIDQHDSLVFNIGDHE-IKSNFLTCSDYFLGAIFENSPCRDREMQSISD 227
            +  G  E M+D+ +     F +       + +L  +        E+SP   + +  ++ 
Sbjct: 210 KSTRGWCEVMVDVGEDSKFRFVLSPSPTPAALYLMPATDETREKMEHSPESGKSVDLLAK 269

Query: 228 RLACDGGTAIVIDYGYLQSRVGDTLQAVKGHTYVSPLVNPGQADLSSHVDFQRLSSIAIL 287
           R+  DGG A++IDYG+   +  D+ +A K H  V  L  PG ADL++ VDF  L   A  
Sbjct: 270 RIGSDGGGALIIDYGHDGIKT-DSFRAFKKHKLVDILDMPGSADLTADVDFTYLRHAA-E 327

Query: 288 YKLYINGLTTQGKFLEGLGIWQRAFSLM---KQTARKDILLDSVKRLVSTSADKKSMGEL 344
             +  NG   Q  FL G+GI  R   L+    + ++++ LL     L+    + K MGE 
Sbjct: 328 GNVDKNGPRKQHCFLNGMGIEIRLKILLDKSNEPSQQEQLLQGYDMLM----NPKKMGER 383

Query: 345 FKIL 348
           F   
Sbjct: 384 FNFF 387


>gnl|CDD|145672 pfam02636, DUF185, Uncharacterized ACR, COG1565.  This family
           contains several uncharacterized proteins. One member
           has been described as an ATP synthase beta subunit
           transcription termination factor rho protein.
          Length = 240

 Score =  212 bits (542), Expect = 1e-55
 Identities = 82/232 (35%), Positives = 123/232 (53%), Gaps = 11/232 (4%)

Query: 62  MLAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSER 121
           +LA +L   W+  G P  +RLVE+G GRG +  DILR + KL P+F+  L  ++VE S  
Sbjct: 1   LLARWLAQLWKALGSPPPLRLVEIGAGRGTLAADILRALRKLLPEFYEALEYHLVEISPA 60

Query: 122 LTLIQKKQLASYGDK-INWYTSLADVPLGFTFLVANEFFDSLPIKQFVMTEHGIRERMID 180
           L   QK++LA   D  + W   L ++P     ++ANE FD+LP+  F     G RER + 
Sbjct: 61  LRERQKERLAGSADLLVKWLDELPELP-FPGVVLANEVFDALPVDLFRRDGGGWRERYVG 119

Query: 181 IDQHDSLVFNIG---DHEIKSNFL-TCSDYFLGAIFENSPCRDREMQSISDRLACDGGTA 236
           +D+    VF +G      +         +   G   E  P  +  ++ +++RL    G  
Sbjct: 120 LDEDGKFVFELGPLSTPSLSDYLPELALNLPEGYRLEIPPAAEAFLEQLAERL--PRGAL 177

Query: 237 IVIDYGYLQS--RVGDTLQAVKGHTYV-SPLVNPGQADLSSHVDFQRLSSIA 285
           ++IDYGY  S  R   TL+A + H     PLVNPG+AD+++HVDF  L+  A
Sbjct: 178 LIIDYGYPASEYRNNGTLRAYRRHRVHDDPLVNPGEADITAHVDFTALAEAA 229


>gnl|CDD|99984 cd03813, GT1_like_3, This family is most closely related to the GT1
           family of glycosyltransferases. Glycosyltransferases
           catalyze the transfer of sugar moieties from activated
           donor molecules to specific acceptor molecules, forming
           glycosidic bonds. The acceptor molecule can be a lipid,
           a protein, a heterocyclic compound, or another
           carbohydrate residue. This group of glycosyltransferases
           is most closely related to the previously defined
           glycosyltransferase family 1 (GT1). The members of this
           family may transfer UDP, ADP, GDP, or CMP linked sugars.
           The diverse enzymatic activities among members of this
           family reflect a wide range of biological functions. The
           protein structure available for this family has the GTB
           topology, one of the two protein topologies observed for
           nucleotide-sugar-dependent glycosyltransferases. GTB
           proteins have distinct N- and C- terminal domains each
           containing a typical Rossmann fold. The two domains have
           high structural homology despite minimal sequence
           homology. The large cleft that separates the two domains
           includes the catalytic center and permits a high degree
           of flexibility. The members of this family are found
           mainly in bacteria, while some of them are also found in
           Archaea and eukaryotes..
          Length = 475

 Score = 30.3 bits (69), Expect = 0.76
 Identities = 12/22 (54%), Positives = 16/22 (72%), Gaps = 2/22 (9%)

Query: 167 FVMTEHGI--RERMIDIDQHDS 186
           F++TEHGI  RER I++ Q D 
Sbjct: 200 FLLTEHGIYTRERKIELLQADW 221


>gnl|CDD|146598 pfam04051, TRAPP, Transport protein particle (TRAPP) component.
           TRAPP plays a key role in the targeting and/or fusion of
           ER-to-Golgi transport vesicles with their acceptor
           compartment. TRAPP is a large multimeric protein that
           contains at least 10 subunits. This family contains many
           TRAPP family proteins. The Bet3 subunit is one of the
           better characterized TRAPP proteins and has a dimeric
           structure with hydrophobic channels. The channel
           entrances are located on a putative membrane-interacting
           surface that is distinctively flat, wide and decorated
           with positively charged residues. Bet3 is proposed to
           localize TRAPP to the Golgi.
          Length = 148

 Score = 27.5 bits (62), Expect = 6.2
 Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 8/45 (17%)

Query: 72  EQHGFPSCVRLVEL-----GPGRGIMMLDILRVICKLKPDFFSVL 111
           E+ G+    RL+E         R   +L++L+ ICK   D + +L
Sbjct: 25  EKMGYNIGQRLIERLLARSKSKRCTDLLEVLKFICK---DLWKML 66


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.324    0.140    0.417 

Gapped
Lambda     K      H
   0.267   0.0799    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 4,403,252
Number of extensions: 237222
Number of successful extensions: 592
Number of sequences better than 10.0: 1
Number of HSP's gapped: 580
Number of HSP's successfully gapped: 9
Length of query: 362
Length of database: 6,263,737
Length adjustment: 95
Effective length of query: 267
Effective length of database: 4,210,882
Effective search space: 1124305494
Effective search space used: 1124305494
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 58 (26.0 bits)