RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780410|ref|YP_003064823.1| hypothetical protein
CLIBASIA_01475 [Candidatus Liberibacter asiaticus str. psy62]
(362 letters)
>1zkd_A DUF185; X-RAY, NESG, RPR58, structural genomics, PSI, protein
structure initiative, northeast structural genomics
consortium; 2.10A {Rhodopseudomonas palustris CGA009}
SCOP: c.66.1.52
Length = 387
Score = 245 bits (626), Expect = 1e-65
Identities = 138/362 (38%), Positives = 198/362 (54%), Gaps = 8/362 (2%)
Query: 2 ENKLIRKIVNLIKKNGQMTVDQYFALCVADPEFGYYSTCNPFGAVGDFVTAPEISQIFGE 61
+ L +I LIK G M V +Y LC+ PE GYY T +P G GDF T+PEISQ+FGE
Sbjct: 4 QTALATEIKRLIKAAGPMPVWRYMELCLGHPEHGYYVTRDPLGREGDFTTSPEISQMFGE 63
Query: 62 MLAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSER 121
+L ++ W+ P +RL+E+GPGRG MM ++ P + LS+++VE +
Sbjct: 64 LLGLWSASVWKAADEPQTLRLIEIGPGRGTMM-ADALRALRVLPILYQSLSVHLVEINPV 122
Query: 122 LTLIQKKQLASYGDKINWYTSLADVPLGFTFLVANEFFDSLPIKQFVMTEHGIRERMIDI 181
L Q+ LA I+W+ S DVP G ++ANE+FD LPI Q + E G ER+I+I
Sbjct: 123 LRQKQQTLLAGI-RNIHWHDSFEDVPEGPAVILANEYFDVLPIHQAIKRETGWHERVIEI 181
Query: 182 DQHDSLVFNIGDHEIKSNFLTCSDYFLGAI--FENSPCRDREMQSISDRLACDGGTAIVI 239
LVF + I + D E+ I+ R+ GG A++I
Sbjct: 182 GASGELVFGVAADPIPGFEALLPPLARLSPPGAVFEWRPDTEILKIASRVRDQGGAALII 241
Query: 240 DYGYLQSRVGDTLQAVKGHTYVSPLVNPGQADLSSHVDFQRLSSIAILYKLYINGLTTQG 299
DYG+L+S VGDT QA+ H+Y PL +PG+ADL++HVDF L A +G TQG
Sbjct: 242 DYGHLRSDVGDTFQAIASHSYADPLQHPGRADLTAHVDFDALGRAAESIGARAHGPVTQG 301
Query: 300 KFLEGLGIWQRAFSLMKQ--TARKDILLDSVKRLVSTSADKKSMGELFKILVVSHEKVEL 357
FL+ LGI RA SLM + + + +++RL T + +MG +FK++ VS K+E
Sbjct: 302 AFLKRLGIETRALSLMAKATPQVSEDIAGALQRL--TGEGRGAMGSMFKVIGVSDPKIET 359
Query: 358 MP 359
+
Sbjct: 360 LV 361
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 49.2 bits (117), Expect = 2e-06
Identities = 69/423 (16%), Positives = 120/423 (28%), Gaps = 189/423 (44%)
Query: 16 NGQMTVDQYFALCVADPEF-GYYSTCNPFGAVGDFV------------TAPEISQIFGEM 62
GQ D YF E Y T + VGD + T + ++F +
Sbjct: 161 GGQGNTDDYFE------ELRDLYQTYHVL--VGDLIKFSAETLSELIRTTLDAEKVFTQG 212
Query: 63 LAIFLICAWEQH---------------GFP------------SCVRLVELGPGR------ 89
L I W ++ P + +L+ PG
Sbjct: 213 LNIL---EWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTA-KLLGFTPGELRSYLK 268
Query: 90 -------GIMM-----------------LDILRVICKLKPDFF-----------SVLSIY 114
G++ + V+ FF + L
Sbjct: 269 GATGHSQGLVTAVAIAETDSWESFFVSVRKAITVL------FFIGVRCYEAYPNTSLPPS 322
Query: 115 MVETSER---------LTL--IQKKQLASYGDKINWY--------TSLADVPLGFTFLVA 155
++E S L++ + ++Q+ Y +K N + SL +
Sbjct: 323 ILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGA-------- 374
Query: 156 NEFFDSLPIKQFVMTE-----HG----IRERMID--IDQHDSLVFNIGDHEIKSNFLTCS 204
K V++ +G +R+ +DQ I E K F S
Sbjct: 375 ---------KNLVVSGPPQSLYGLNLTLRKAKAPSGLDQS-----RIPFSERKLKF---S 417
Query: 205 DYFL--GAIFENSPCRDREMQSISDRLACDGGTAIVIDYGYLQSRVGDT-----LQAVKG 257
+ FL + F +S I+ L + + + +Q V DT L+ + G
Sbjct: 418 NRFLPVASPF-HSHLLVPASDLINKDLVKNN---VSFNAKDIQIPVYDTFDGSDLRVLSG 473
Query: 258 ---HTYVS-----PLVNPGQA--DLSSH-VDFQR--LSSIAILYKLYINGLTTQGKFLEG 304
V P V ++H +DF S + + LT + K +G
Sbjct: 474 SISERIVDCIIRLP-VKWETTTQFKATHILDFGPGGASGLGV--------LTHRNK--DG 522
Query: 305 LGI 307
G+
Sbjct: 523 TGV 525
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl
reductase, beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 30.2 bits (67), Expect = 0.71
Identities = 32/118 (27%), Positives = 49/118 (41%), Gaps = 42/118 (35%)
Query: 233 GGTAIVIDYGYLQSRVGDTLQAVKGHTYVSPLVNPGQADLSSHVDFQRLSSIAILYKLYI 292
GG AIV+ YL + + + + YV A +S+ R S YK +
Sbjct: 1451 GGQAIVVHPDYLYGAITED----RYNEYV--------AKVSA-----REKSA---YKFFH 1490
Query: 293 NGLTTQGKFLEGLGIWQRAFSLMKQTA------RKDILLDSVKRLVSTSADKKSMGEL 344
NG+ I+ + F + K+ A +D+ LD + R+ S DKKS G L
Sbjct: 1491 NGM-----------IYNKLF-VSKEHAPYTDELEEDVYLDPLARV---SKDKKS-GSL 1532
>2r5f_A Transcriptional regulator, putative; transcription regulator,
sugar-binding domain, structural genomics, PFAM04198,
PSI-2; 2.10A {Pseudomonas syringae PV} SCOP: c.124.1.8
Length = 264
Score = 29.5 bits (66), Expect = 1.3
Identities = 10/62 (16%), Positives = 22/62 (35%)
Query: 152 FLVANEFFDSLPIKQFVMTEHGIRERMIDIDQHDSLVFNIGDHEIKSNFLTCSDYFLGAI 211
L + S+ KQ ++ ++E + D + IG+ E +Y+ +
Sbjct: 121 LLPSQSIEQSVESKQRIVEMEEVKEVLHRFDSITLAIVGIGELEPSQLLRNSGNYYTEDM 180
Query: 212 FE 213
Sbjct: 181 LR 182
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A
{Saccharomyces cerevisiae} SCOP: a.118.1.9
Length = 480
Score = 29.2 bits (65), Expect = 1.7
Identities = 10/57 (17%), Positives = 22/57 (38%), Gaps = 7/57 (12%)
Query: 157 EFFDSLPIKQFVMTEHGIRERMIDIDQHDSLVFNIGDHEIKSNFLTCSDYFLGAIFE 213
+ LP V+ + G + ++++ H D +K L + +G F+
Sbjct: 431 HVVELLPESIDVLDKTGGKADIMELLNHS-------DSRVKYEALKATQAIIGYTFK 480
>1ma1_A Superoxide dismutase; metal specificity, azide inhibition, peroxide
inactivation, oxidoreductase; 2.60A
{Methanothermobacterthermautotrophicus} SCOP: a.2.11.1
d.44.1.1
Length = 205
Score = 26.6 bits (58), Expect = 9.5
Identities = 6/32 (18%), Positives = 14/32 (43%)
Query: 293 NGLTTQGKFLEGLGIWQRAFSLMKQTARKDIL 324
+ + L L +W+ A+ + + R D +
Sbjct: 154 VNVIPHFRILLVLDVWEHAYYIDYRNVRPDYV 185
>3hm8_A Hexokinase-3; glucose, glucose-6-phosphate, non-protein kinase,
structural genomics, structural genomics consortium,
SGC, allosteric enzyme; HET: GLC BG6; 2.80A {Homo
sapiens}
Length = 445
Score = 26.3 bits (58), Expect = 9.8
Identities = 27/103 (26%), Positives = 39/103 (37%), Gaps = 22/103 (21%)
Query: 76 FPSCVRLVELGPGRGIMM-LDI----LRV-ICKLKPDFFSVLSIYMVETSERLTLIQKKQ 129
P+ VR G RG + LD+ RV + ++ IY + E + +Q
Sbjct: 45 LPTFVRATPDGSERGDFLALDLGGTNFRVLLVRVTTGVQITSEIYSIP--ETVAQGSGQQ 102
Query: 130 LASY-GDKI-----NWYTSLADVPLGFTFLVANEFFDSLPIKQ 166
L + D I S +PLGFTF S P +Q
Sbjct: 103 LFDHIVDCIVDFQQKQGLSGQSLPLGFTF--------SFPCRQ 137
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.324 0.140 0.417
Gapped
Lambda K H
0.267 0.0636 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 3,120,667
Number of extensions: 143347
Number of successful extensions: 479
Number of sequences better than 10.0: 1
Number of HSP's gapped: 476
Number of HSP's successfully gapped: 10
Length of query: 362
Length of database: 5,693,230
Length adjustment: 94
Effective length of query: 268
Effective length of database: 3,414,294
Effective search space: 915030792
Effective search space used: 915030792
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 57 (25.9 bits)