RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780410|ref|YP_003064823.1| hypothetical protein CLIBASIA_01475 [Candidatus Liberibacter asiaticus str. psy62] (362 letters) >1zkd_A DUF185; X-RAY, NESG, RPR58, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium; 2.10A {Rhodopseudomonas palustris CGA009} SCOP: c.66.1.52 Length = 387 Score = 245 bits (626), Expect = 1e-65 Identities = 138/362 (38%), Positives = 198/362 (54%), Gaps = 8/362 (2%) Query: 2 ENKLIRKIVNLIKKNGQMTVDQYFALCVADPEFGYYSTCNPFGAVGDFVTAPEISQIFGE 61 + L +I LIK G M V +Y LC+ PE GYY T +P G GDF T+PEISQ+FGE Sbjct: 4 QTALATEIKRLIKAAGPMPVWRYMELCLGHPEHGYYVTRDPLGREGDFTTSPEISQMFGE 63 Query: 62 MLAIFLICAWEQHGFPSCVRLVELGPGRGIMMLDILRVICKLKPDFFSVLSIYMVETSER 121 +L ++ W+ P +RL+E+GPGRG MM ++ P + LS+++VE + Sbjct: 64 LLGLWSASVWKAADEPQTLRLIEIGPGRGTMM-ADALRALRVLPILYQSLSVHLVEINPV 122 Query: 122 LTLIQKKQLASYGDKINWYTSLADVPLGFTFLVANEFFDSLPIKQFVMTEHGIRERMIDI 181 L Q+ LA I+W+ S DVP G ++ANE+FD LPI Q + E G ER+I+I Sbjct: 123 LRQKQQTLLAGI-RNIHWHDSFEDVPEGPAVILANEYFDVLPIHQAIKRETGWHERVIEI 181 Query: 182 DQHDSLVFNIGDHEIKSNFLTCSDYFLGAI--FENSPCRDREMQSISDRLACDGGTAIVI 239 LVF + I + D E+ I+ R+ GG A++I Sbjct: 182 GASGELVFGVAADPIPGFEALLPPLARLSPPGAVFEWRPDTEILKIASRVRDQGGAALII 241 Query: 240 DYGYLQSRVGDTLQAVKGHTYVSPLVNPGQADLSSHVDFQRLSSIAILYKLYINGLTTQG 299 DYG+L+S VGDT QA+ H+Y PL +PG+ADL++HVDF L A +G TQG Sbjct: 242 DYGHLRSDVGDTFQAIASHSYADPLQHPGRADLTAHVDFDALGRAAESIGARAHGPVTQG 301 Query: 300 KFLEGLGIWQRAFSLMKQ--TARKDILLDSVKRLVSTSADKKSMGELFKILVVSHEKVEL 357 FL+ LGI RA SLM + + + +++RL T + +MG +FK++ VS K+E Sbjct: 302 AFLKRLGIETRALSLMAKATPQVSEDIAGALQRL--TGEGRGAMGSMFKVIGVSDPKIET 359 Query: 358 MP 359 + Sbjct: 360 LV 361 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 49.2 bits (117), Expect = 2e-06 Identities = 69/423 (16%), Positives = 120/423 (28%), Gaps = 189/423 (44%) Query: 16 NGQMTVDQYFALCVADPEF-GYYSTCNPFGAVGDFV------------TAPEISQIFGEM 62 GQ D YF E Y T + VGD + T + ++F + Sbjct: 161 GGQGNTDDYFE------ELRDLYQTYHVL--VGDLIKFSAETLSELIRTTLDAEKVFTQG 212 Query: 63 LAIFLICAWEQH---------------GFP------------SCVRLVELGPGR------ 89 L I W ++ P + +L+ PG Sbjct: 213 LNIL---EWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTA-KLLGFTPGELRSYLK 268 Query: 90 -------GIMM-----------------LDILRVICKLKPDFF-----------SVLSIY 114 G++ + V+ FF + L Sbjct: 269 GATGHSQGLVTAVAIAETDSWESFFVSVRKAITVL------FFIGVRCYEAYPNTSLPPS 322 Query: 115 MVETSER---------LTL--IQKKQLASYGDKINWY--------TSLADVPLGFTFLVA 155 ++E S L++ + ++Q+ Y +K N + SL + Sbjct: 323 ILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGA-------- 374 Query: 156 NEFFDSLPIKQFVMTE-----HG----IRERMID--IDQHDSLVFNIGDHEIKSNFLTCS 204 K V++ +G +R+ +DQ I E K F S Sbjct: 375 ---------KNLVVSGPPQSLYGLNLTLRKAKAPSGLDQS-----RIPFSERKLKF---S 417 Query: 205 DYFL--GAIFENSPCRDREMQSISDRLACDGGTAIVIDYGYLQSRVGDT-----LQAVKG 257 + FL + F +S I+ L + + + +Q V DT L+ + G Sbjct: 418 NRFLPVASPF-HSHLLVPASDLINKDLVKNN---VSFNAKDIQIPVYDTFDGSDLRVLSG 473 Query: 258 ---HTYVS-----PLVNPGQA--DLSSH-VDFQR--LSSIAILYKLYINGLTTQGKFLEG 304 V P V ++H +DF S + + LT + K +G Sbjct: 474 SISERIVDCIIRLP-VKWETTTQFKATHILDFGPGGASGLGV--------LTHRNK--DG 522 Query: 305 LGI 307 G+ Sbjct: 523 TGV 525 >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 1688 Score = 30.2 bits (67), Expect = 0.71 Identities = 32/118 (27%), Positives = 49/118 (41%), Gaps = 42/118 (35%) Query: 233 GGTAIVIDYGYLQSRVGDTLQAVKGHTYVSPLVNPGQADLSSHVDFQRLSSIAILYKLYI 292 GG AIV+ YL + + + + YV A +S+ R S YK + Sbjct: 1451 GGQAIVVHPDYLYGAITED----RYNEYV--------AKVSA-----REKSA---YKFFH 1490 Query: 293 NGLTTQGKFLEGLGIWQRAFSLMKQTA------RKDILLDSVKRLVSTSADKKSMGEL 344 NG+ I+ + F + K+ A +D+ LD + R+ S DKKS G L Sbjct: 1491 NGM-----------IYNKLF-VSKEHAPYTDELEEDVYLDPLARV---SKDKKS-GSL 1532 >2r5f_A Transcriptional regulator, putative; transcription regulator, sugar-binding domain, structural genomics, PFAM04198, PSI-2; 2.10A {Pseudomonas syringae PV} SCOP: c.124.1.8 Length = 264 Score = 29.5 bits (66), Expect = 1.3 Identities = 10/62 (16%), Positives = 22/62 (35%) Query: 152 FLVANEFFDSLPIKQFVMTEHGIRERMIDIDQHDSLVFNIGDHEIKSNFLTCSDYFLGAI 211 L + S+ KQ ++ ++E + D + IG+ E +Y+ + Sbjct: 121 LLPSQSIEQSVESKQRIVEMEEVKEVLHRFDSITLAIVGIGELEPSQLLRNSGNYYTEDM 180 Query: 212 FE 213 Sbjct: 181 LR 182 >1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9 Length = 480 Score = 29.2 bits (65), Expect = 1.7 Identities = 10/57 (17%), Positives = 22/57 (38%), Gaps = 7/57 (12%) Query: 157 EFFDSLPIKQFVMTEHGIRERMIDIDQHDSLVFNIGDHEIKSNFLTCSDYFLGAIFE 213 + LP V+ + G + ++++ H D +K L + +G F+ Sbjct: 431 HVVELLPESIDVLDKTGGKADIMELLNHS-------DSRVKYEALKATQAIIGYTFK 480 >1ma1_A Superoxide dismutase; metal specificity, azide inhibition, peroxide inactivation, oxidoreductase; 2.60A {Methanothermobacterthermautotrophicus} SCOP: a.2.11.1 d.44.1.1 Length = 205 Score = 26.6 bits (58), Expect = 9.5 Identities = 6/32 (18%), Positives = 14/32 (43%) Query: 293 NGLTTQGKFLEGLGIWQRAFSLMKQTARKDIL 324 + + L L +W+ A+ + + R D + Sbjct: 154 VNVIPHFRILLVLDVWEHAYYIDYRNVRPDYV 185 >3hm8_A Hexokinase-3; glucose, glucose-6-phosphate, non-protein kinase, structural genomics, structural genomics consortium, SGC, allosteric enzyme; HET: GLC BG6; 2.80A {Homo sapiens} Length = 445 Score = 26.3 bits (58), Expect = 9.8 Identities = 27/103 (26%), Positives = 39/103 (37%), Gaps = 22/103 (21%) Query: 76 FPSCVRLVELGPGRGIMM-LDI----LRV-ICKLKPDFFSVLSIYMVETSERLTLIQKKQ 129 P+ VR G RG + LD+ RV + ++ IY + E + +Q Sbjct: 45 LPTFVRATPDGSERGDFLALDLGGTNFRVLLVRVTTGVQITSEIYSIP--ETVAQGSGQQ 102 Query: 130 LASY-GDKI-----NWYTSLADVPLGFTFLVANEFFDSLPIKQ 166 L + D I S +PLGFTF S P +Q Sbjct: 103 LFDHIVDCIVDFQQKQGLSGQSLPLGFTF--------SFPCRQ 137 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.324 0.140 0.417 Gapped Lambda K H 0.267 0.0636 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 3,120,667 Number of extensions: 143347 Number of successful extensions: 479 Number of sequences better than 10.0: 1 Number of HSP's gapped: 476 Number of HSP's successfully gapped: 10 Length of query: 362 Length of database: 5,693,230 Length adjustment: 94 Effective length of query: 268 Effective length of database: 3,414,294 Effective search space: 915030792 Effective search space used: 915030792 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 57 (25.9 bits)