Query gi|254780411|ref|YP_003064824.1| prolipoprotein diacylglyceryl transferase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 288
No_of_seqs 131 out of 2251
Neff 6.4
Searched_HMMs 39220
Date Sun May 29 20:33:15 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780411.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK12437 prolipoprotein diacyl 100.0 0 0 539.5 24.8 256 10-285 1-263 (269)
2 pfam01790 LGT Prolipoprotein d 100.0 0 0 520.2 21.6 248 15-280 1-257 (257)
3 PRK00052 prolipoprotein diacyl 100.0 0 0 515.3 23.7 250 9-275 1-252 (253)
4 COG0682 Lgt Prolipoprotein dia 100.0 0 0 511.4 16.8 262 7-283 2-279 (287)
5 PRK13108 prolipoprotein diacyl 100.0 0 0 471.3 18.6 252 14-285 9-283 (460)
6 TIGR00544 lgt prolipoprotein d 100.0 0 0 316.5 18.7 265 9-282 4-351 (358)
7 KOG4332 consensus 88.3 0.94 2.4E-05 22.8 4.6 143 22-174 73-229 (454)
8 PRK10478 putative fructose-lik 69.3 7.4 0.00019 17.7 6.1 37 113-149 98-134 (359)
9 PRK09765 2-O-a-mannosyl-D-glyc 59.7 11 0.00029 16.7 6.3 23 113-135 376-398 (638)
10 KOG3703 consensus 59.0 5.6 0.00014 18.4 1.7 36 161-198 403-438 (873)
11 pfam09512 ThiW Thiamine-precur 57.0 13 0.00032 16.4 7.2 37 115-151 66-102 (150)
12 PRK11404 putative PTS transpor 56.8 10 0.00026 16.9 2.7 35 113-147 224-258 (482)
13 TIGR02359 thiW thiW protein; I 55.6 11 0.00028 16.8 2.7 32 115-146 69-104 (166)
14 pfam02378 PTS_EIIC Phosphotran 54.0 14 0.00037 16.1 10.7 118 29-166 46-175 (313)
15 KOG1278 consensus 52.3 15 0.00039 16.0 10.1 24 214-238 555-578 (628)
16 PRK10712 fructose-specific PTS 50.0 17 0.00042 15.8 5.2 33 113-145 311-344 (563)
17 PRK00376 lspA lipoprotein sign 47.4 18 0.00047 15.5 6.8 25 148-175 97-121 (162)
18 PRK12468 flhB flagellar biosyn 45.4 15 0.0004 15.9 2.1 10 191-200 333-342 (383)
19 PRK02110 disulfide bond format 43.9 21 0.00053 15.2 3.4 23 253-275 137-159 (169)
20 PRK10452 multidrug efflux syst 43.8 21 0.00054 15.2 7.0 49 222-276 55-103 (120)
21 TIGR01478 STEVOR variant surfa 43.1 22 0.00055 15.1 3.2 20 264-283 284-303 (315)
22 PRK10472 low affinity gluconat 39.2 25 0.00063 14.8 12.1 128 11-145 157-294 (445)
23 COG1377 FlhB Flagellar biosynt 36.4 28 0.0007 14.5 2.5 10 191-200 333-342 (363)
24 pfam05631 DUF791 Protein of un 36.1 28 0.00071 14.5 7.7 88 142-235 196-295 (354)
25 pfam09578 Spore_YabQ Spore cor 35.3 29 0.00073 14.4 5.6 47 33-88 3-49 (80)
26 COG2261 Predicted membrane pro 31.9 33 0.00084 14.1 6.7 75 34-136 6-80 (82)
27 PRK09821 inner membrane permea 29.5 36 0.00092 13.9 12.0 40 12-53 158-204 (454)
28 pfam08449 UAA UAA transporter 25.8 42 0.0011 13.5 9.3 31 252-282 273-303 (303)
29 PRK09921 permease DsdX; Provis 25.0 44 0.0011 13.4 11.6 128 11-145 157-296 (445)
30 COG1108 ZnuB ABC-type Mn2+/Zn2 24.8 44 0.0011 13.4 10.5 12 190-201 172-183 (274)
31 PRK11453 O-acetylserine/cystei 22.2 50 0.0013 13.1 7.9 54 220-282 240-293 (299)
32 PRK02971 hypothetical protein; 21.9 28 0.00071 14.5 0.2 27 255-281 101-127 (129)
33 KOG0475 consensus 21.3 52 0.0013 13.0 7.1 12 232-243 358-369 (696)
34 pfam12062 HSNSD heparan sulfat 20.8 53 0.0014 12.9 1.6 31 168-199 390-420 (487)
35 pfam04142 Nuc_sug_transp Nucle 20.6 54 0.0014 12.9 2.9 16 131-146 62-77 (238)
36 PRK04388 disulfide bond format 20.3 55 0.0014 12.8 3.6 28 254-281 139-169 (172)
No 1
>PRK12437 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=100.00 E-value=0 Score=539.48 Aligned_cols=256 Identities=33% Similarity=0.583 Sum_probs=234.9
Q ss_pred HHCCCCCCHHHEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 75288991121635762258999999999999999999997223422000233344555734678889999999874677
Q gi|254780411|r 10 ILTYPNLNPVALSLGPIAIRWYGLAYLVGMLFGIWYIQYLLGKPALWTEKQNNENLVYKEGDCQESCFFWLAISVIVGGR 89 (288)
Q Consensus 10 ~~~yp~~~Pvlf~iGp~~I~~YGlm~~lGi~~g~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~~l~~~~ii~giiGAR 89 (288)
|+.+|+|||++|++||++|||||+|+++|+++|++++.+++||+++ ++|.++|+++|+++++++|||
T Consensus 1 ~~~~p~~~Pv~f~iG~~~I~~YGl~~alg~l~~~~~~~r~~k~~g~-------------~~~~~~~~~~~~vi~giiGaR 67 (269)
T PRK12437 1 LLSIPPMNPVALSLGPLEVRWYGIIIALGILAALILANRNGKKKNV-------------PFDVILDLVLYAFPFAILGAR 67 (269)
T ss_pred CCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-------------CHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999913588718278999999999999999999999998698-------------989999999999999999999
Q ss_pred HHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 89997108787421144432200043100279899999998888754998124100013677899999987765566631
Q gi|254780411|r 90 IMYVLFYNWQVFWNSPLHIFFLWEGGMSFHGGLIGAFVSLFLLSRIYCFSFLLFLDLVAASVPVGIFLGRIANFINGELW 169 (288)
Q Consensus 90 l~yvlf~~~~~y~~~p~~i~~iw~GGls~~Gg~ig~~~~~~~~~~~~~~~~~~~~D~~ap~~~lg~~iGRiGcf~nge~~ 169 (288)
++||++ ||++|.+||++++++|+||||+|||++|+++++++|+|++|+|+++++|.+||++++||++||||||+|||||
T Consensus 68 l~yvl~-~~~~~~~~p~~i~~iw~GGls~~GG~iG~~la~~~~~k~~k~~~~~~~D~~ap~l~lg~~~GRiGnf~nge~~ 146 (269)
T PRK12437 68 IYYVLF-EFENYKNNPNDILNIWEGGLAIHGGIIGAFVTAWIFCKKKKISFLAYADIVAPSIILAQAIGRWGNFFNQEAH 146 (269)
T ss_pred HHHHHH-HHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 999984-1577744989998896684068779999999999999984104899989999999999999999998710657
Q ss_pred CCCCCCCCCCCCCCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 123447433336320-------0112322245899998666766677765443105842206799999999999987710
Q gi|254780411|r 170 GRVSWVPWAMVFPDG-------GSLPRHPSQLYEAITEGLMIFLIMQLMVYRGSFKSPGLTAGAFAICYSVVRFFMEFFR 242 (288)
Q Consensus 170 G~~t~~pwgv~fp~~-------~~~p~hPtqLYEa~~~~l~~~~ll~~~~~~~~~~~~G~~~~~yl~~Y~~~Rf~iEf~R 242 (288)
|+|||+|||++||++ ++.|+||||||||++|++++++++++. +|+++++|+++++|+++|++.||++||+|
T Consensus 147 G~~t~~pwg~~fp~~~~~~~~~~~~~~HPtqLYEa~~~~~i~~~ll~~~--~r~~~~~G~~~~~yli~Yg~~Rf~iEf~R 224 (269)
T PRK12437 147 GGPVTRTFIERFPDAIQNGMYINGAYYHPTFLYESIWNIVILFLTLWLY--KKKPLKRGVVFASYLILYSIGRFFIEGLR 224 (269)
T ss_pred CCCCCCCHHEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH--HHCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8867973411517533455576885367099999999999999999999--70568983779999999999999999974
Q ss_pred CCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 6721102443112248999999999999999999835787533
Q gi|254780411|r 243 EPDYQLGYLLGGWMTMGMILSILPFLVGVGMVFQSMNSKSGSS 285 (288)
Q Consensus 243 ~~~~~~~~~~~~~ls~~Q~~sl~~~i~g~~l~~~~~~~~~~~~ 285 (288)
+||... .+++|++|++|++|+++|++++++.+||.++++
T Consensus 225 ~d~~~~----~~~lt~~Q~lSl~~i~~G~~ll~~~~rr~~k~~ 263 (269)
T PRK12437 225 TDSLML----TGNLRMAQVMSILGIIIGLVLLIYIRRRGLKTT 263 (269)
T ss_pred CCCHHH----HCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 572787----478119999999999999999999986265542
No 2
>pfam01790 LGT Prolipoprotein diacylglyceryl transferase.
Probab=100.00 E-value=0 Score=520.17 Aligned_cols=248 Identities=46% Similarity=0.929 Sum_probs=230.0
Q ss_pred CCCHHHEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99112163576225899999999999999999999722342200023334455573467888999999987467789997
Q gi|254780411|r 15 NLNPVALSLGPIAIRWYGLAYLVGMLFGIWYIQYLLGKPALWTEKQNNENLVYKEGDCQESCFFWLAISVIVGGRIMYVL 94 (288)
Q Consensus 15 ~~~Pvlf~iGp~~I~~YGlm~~lGi~~g~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~~l~~~~ii~giiGARl~yvl 94 (288)
+|||++|++||++|||||+|+++|+++|.+++.+++||+++ ++|.++|+++|+++++++|||++||+
T Consensus 1 ~m~Pvl~~iG~~~i~~Ygl~~~lg~l~~~~~~~~~~~r~g~-------------~~~~~~~l~~~~~i~giiGARl~~vl 67 (257)
T pfam01790 1 SIDPVAFSIGPLAIRWYGLMYAIGILLAYWLARKRAKKRGI-------------NKDQLDDLLLWAVLGGIIGARLGYVL 67 (257)
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-------------CHHHHHHHHHHHHHHHHHHHHEEEEE
T ss_conf 98976999828038999999999999999999999987698-------------98999999999999999864057778
Q ss_pred HCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 10878742114443220004310027989999999888875499812410001367789999998776556663112344
Q gi|254780411|r 95 FYNWQVFWNSPLHIFFLWEGGMSFHGGLIGAFVSLFLLSRIYCFSFLLFLDLVAASVPVGIFLGRIANFINGELWGRVSW 174 (288)
Q Consensus 95 f~~~~~y~~~p~~i~~iw~GGls~~Gg~ig~~~~~~~~~~~~~~~~~~~~D~~ap~~~lg~~iGRiGcf~nge~~G~~t~ 174 (288)
||||++|.+||++++++|+||+|+|||++|+++++++|+|++|+|+++++|.+||++++||++||||||+||||||+|||
T Consensus 68 ~~~~~~~~~~p~~i~~iw~gGls~~Gg~ig~~l~~~~~~r~~~~~~~~~~D~~ap~~~lg~aiGRiGcf~nge~~G~pt~ 147 (257)
T pfam01790 68 FYDWSYYLQNPLEIFKIWEGGMAIHGGLIGGILAALLFSRKKKLSFLKLADLIAPAVPLGQAIGRWGNFINGELYGRPTD 147 (257)
T ss_pred EECHHHHHCCHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 65567761296987253179764067899999999998977168689997788999999999999899870174788799
Q ss_pred CCCCCCCCCC---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 7433336320---------0112322245899998666766677765443105842206799999999999987710672
Q gi|254780411|r 175 VPWAMVFPDG---------GSLPRHPSQLYEAITEGLMIFLIMQLMVYRGSFKSPGLTAGAFAICYSVVRFFMEFFREPD 245 (288)
Q Consensus 175 ~pwgv~fp~~---------~~~p~hPtqLYEa~~~~l~~~~ll~~~~~~~~~~~~G~~~~~yl~~Y~~~Rf~iEf~R~~~ 245 (288)
+|||+.||++ ++.|||||||||+++|+++++++++ +.++++++++|+++++|+++|++.||++||+|+||
T Consensus 148 ~pwgv~f~~~~~~~~~~~~~~~~~hPtqLYE~~~~l~~~~~l~~-~~~~~~~~~~G~~~~~yli~Y~~~Rf~~Ef~R~~~ 226 (257)
T pfam01790 148 LPWAIIFPLPNFIINQMYIGGLPRHPTQLYESILEGIVFFIILW-LRRRKKKLKPGFVFGLYLIGYGLGRFFIEFFREPD 226 (257)
T ss_pred CCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH-HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCH
T ss_conf 87278856731123445788866674699999999999999999-99852446565999999999999999887741781
Q ss_pred CHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 11024431122489999999999999999998357
Q gi|254780411|r 246 YQLGYLLGGWMTMGMILSILPFLVGVGMVFQSMNS 280 (288)
Q Consensus 246 ~~~~~~~~~~ls~~Q~~sl~~~i~g~~l~~~~~~~ 280 (288)
... .+++|++|++|+.++++|++++++++||
T Consensus 227 ~~~----~~~lt~~Q~~sl~~i~~G~~l~~~~~rr 257 (257)
T pfam01790 227 LQL----GGGLRMGQILSIPMILLGIILIIFARRK 257 (257)
T ss_pred HHH----CCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 662----2882499999999999999999987249
No 3
>PRK00052 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=100.00 E-value=0 Score=515.32 Aligned_cols=250 Identities=49% Similarity=0.952 Sum_probs=231.8
Q ss_pred HHHCCCCCCHHHEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 97528899112163576225899999999999999999999722342200023334455573467888999999987467
Q gi|254780411|r 9 SILTYPNLNPVALSLGPIAIRWYGLAYLVGMLFGIWYIQYLLGKPALWTEKQNNENLVYKEGDCQESCFFWLAISVIVGG 88 (288)
Q Consensus 9 ~~~~yp~~~Pvlf~iGp~~I~~YGlm~~lGi~~g~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~~l~~~~ii~giiGA 88 (288)
++..+|+|||+++++||++|||||+|+++|+++|.+++.+++||+++ ++|.++|+++++++++++||
T Consensus 1 ~~~~~~~~~P~~~~iG~~~i~~Ygl~~alg~l~g~~~~~~~~k~~g~-------------~~~~~~~~~~~~vi~giiGa 67 (253)
T PRK00052 1 MMLIFPSIDPVAFSLGPLAIRWYGLMYLLGILLAYWLARRRAKRRGL-------------TPDDLDDLLFWAVLGVILGA 67 (253)
T ss_pred CCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-------------CHHHHHHHHHHHHHHHHHHH
T ss_conf 90258999910488748338899999999999999999999987698-------------98999999999999999998
Q ss_pred HHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 78999710878742114443220004310027989999999888875499812410001367789999998776556663
Q gi|254780411|r 89 RIMYVLFYNWQVFWNSPLHIFFLWEGGMSFHGGLIGAFVSLFLLSRIYCFSFLLFLDLVAASVPVGIFLGRIANFINGEL 168 (288)
Q Consensus 89 Rl~yvlf~~~~~y~~~p~~i~~iw~GGls~~Gg~ig~~~~~~~~~~~~~~~~~~~~D~~ap~~~lg~~iGRiGcf~nge~ 168 (288)
|++||+|||||+|.+||.+++++|+||||+|||++|+++++++|+|++|+|+++++|+++|++++||++||||||+||||
T Consensus 68 Rl~~vl~~~~~~~~~~p~~i~~iw~GGls~~GG~ig~~la~~~~~~~~~~~~~~~~D~~ap~l~lg~aiGRiGcf~nge~ 147 (253)
T PRK00052 68 RLGYVLFYEPDYYLANPLEIFKIWEGGMSIHGGLIGGILAMLLFCRRKKLSFLQLLDIIAPSVPLGQAIGRLGNFINGEL 147 (253)
T ss_pred HHHHHHHCCHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 88898604737540296886132168513765899999999999987267499998998999999999999999870263
Q ss_pred CCC--CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 112--344743333632001123222458999986667666777654431058422067999999999999877106721
Q gi|254780411|r 169 WGR--VSWVPWAMVFPDGGSLPRHPSQLYEAITEGLMIFLIMQLMVYRGSFKSPGLTAGAFAICYSVVRFFMEFFREPDY 246 (288)
Q Consensus 169 ~G~--~t~~pwgv~fp~~~~~p~hPtqLYEa~~~~l~~~~ll~~~~~~~~~~~~G~~~~~yl~~Y~~~Rf~iEf~R~~~~ 246 (288)
||+ ||+.||+++||++++.|||||||||+++|+++++++++.. +|+++++|+++++|+++|++.||++||+|+||.
T Consensus 148 ~G~~~~t~~pw~v~fp~~~~~p~hP~qLYE~~~~~~i~~~l~~~~--~~~~~~~G~if~~yli~Y~~~RF~lEf~R~~~~ 225 (253)
T PRK00052 148 YGRPTPTDLPWGMIFPGGGGLPRHPSQLYEALLEGLVLFILLWLF--RRKPLKPGAVFGLYLIGYGLGRFFIEFFREPDA 225 (253)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH--HCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 688898777300016898777777389999999999999999999--716577767999999999999999987306852
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 10244311224899999999999999999
Q gi|254780411|r 247 QLGYLLGGWMTMGMILSILPFLVGVGMVF 275 (288)
Q Consensus 247 ~~~~~~~~~ls~~Q~~sl~~~i~g~~l~~ 275 (288)
... ..+++|++|++|+.++++|+++++
T Consensus 226 ~~~--~~~glt~~Q~~Sl~~i~~Gi~~l~ 252 (253)
T PRK00052 226 QGL--LFGGLSMGQILSIPMILLGIILII 252 (253)
T ss_pred CHH--HCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 011--007824999999999999999992
No 4
>COG0682 Lgt Prolipoprotein diacylglyceryltransferase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=0 Score=511.39 Aligned_cols=262 Identities=45% Similarity=0.845 Sum_probs=234.7
Q ss_pred HHHHHCCCCCCHHHEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 99975288991121635762258999999999999999999997223422000233344555734678889999999874
Q gi|254780411|r 7 LWSILTYPNLNPVALSLGPIAIRWYGLAYLVGMLFGIWYIQYLLGKPALWTEKQNNENLVYKEGDCQESCFFWLAISVIV 86 (288)
Q Consensus 7 ~~~~~~yp~~~Pvlf~iGp~~I~~YGlm~~lGi~~g~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~~l~~~~ii~gii 86 (288)
+.+++++|++||++|++||+++||||+|+++|+++|++++.++++|++. .+.|.++|+++|+++++++
T Consensus 2 ~~~~~~~~~~~pv~f~iGpl~i~WYgl~~~~Gil~a~~l~~~~~~~~~~------------~~~~~~~d~i~~avl~~ii 69 (287)
T COG0682 2 PLSYLIFPPIDPVAFSIGPLAIRWYGLMYVLGILLAYWLARKRARKPGG------------ITDDDFEDFILWAVLGGII 69 (287)
T ss_pred CCCCCCCCCCCCEEEEECCEEHHHHHHHHHHHHHHHHHHHHHHHHHCCC------------CCHHHHHHHHHHHHHHHHC
T ss_conf 9765568999946999778212299999999999999999999985479------------8688999999999998862
Q ss_pred HHHHHHHHHCCHHHHH-HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH--HHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 6778999710878742-1144432200043100279899999998888--754998124100013677899999987765
Q gi|254780411|r 87 GGRIMYVLFYNWQVFW-NSPLHIFFLWEGGMSFHGGLIGAFVSLFLLS--RIYCFSFLLFLDLVAASVPVGIFLGRIANF 163 (288)
Q Consensus 87 GARl~yvlf~~~~~y~-~~p~~i~~iw~GGls~~Gg~ig~~~~~~~~~--~~~~~~~~~~~D~~ap~~~lg~~iGRiGcf 163 (288)
|||++||+||+++++. +||.+++++|+||||+|||++|+++++++|+ |++|+++++++|.+||++++||++||||||
T Consensus 70 GaRl~yvlfy~~~~~~~~~p~~i~~iw~GGmsihGGlig~~la~~if~~~~~~~i~~~~~~D~iap~v~lg~~~GR~GNF 149 (287)
T COG0682 70 GARLGYVLFYWPSYYQNANPLDIFKIWEGGMSIHGGLIGGILAALIFSRKKRKKISFLQLLDLIAPSVPLGQAIGRWGNF 149 (287)
T ss_pred CCEEEEEEEECCCCCCCCCHHHHHHHHCCCCEECHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 02488999974300133699999988168402007899999999987422235778899999988889999999999987
Q ss_pred HHHHHCCCCC----CCC-CCCCCCCC--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 5666311234----474-33336320--------0112322245899998666766677765443105842206799999
Q gi|254780411|r 164 INGELWGRVS----WVP-WAMVFPDG--------GSLPRHPSQLYEAITEGLMIFLIMQLMVYRGSFKSPGLTAGAFAIC 230 (288)
Q Consensus 164 ~nge~~G~~t----~~p-wgv~fp~~--------~~~p~hPtqLYEa~~~~l~~~~ll~~~~~~~~~~~~G~~~~~yl~~ 230 (288)
+|||+||+|| +.| |++.||++ ..+||||||||||++|++++++++++.+++ +.+++|.++++|+++
T Consensus 150 ~N~El~Gr~t~~~~~~~~~~~~f~~~~~~~~~~~~~~prhPsqLYE~~~~~iv~~iil~~~~~~-~~~~~G~v~~~y~~~ 228 (287)
T COG0682 150 INQELYGRPTTGPWNLPHWPMFFPNPMYIDGAYTGALPRHPSQLYESFLEGIVFFIILFLFRRK-PLLKSGFVFGLYLIG 228 (287)
T ss_pred HHHEEECCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCCCCEEEEHHHHHH
T ss_conf 5112441323686776213211537555555446666778179999999888861048888743-457770351268999
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 99999998771067211024431122489999999999999999998357875
Q gi|254780411|r 231 YSVVRFFMEFFREPDYQLGYLLGGWMTMGMILSILPFLVGVGMVFQSMNSKSG 283 (288)
Q Consensus 231 Y~~~Rf~iEf~R~~~~~~~~~~~~~ls~~Q~~sl~~~i~g~~l~~~~~~~~~~ 283 (288)
||+.||++|++|+||.+.+...... ++|++|++|+++|++++++.++++++
T Consensus 229 Yg~~Rf~iE~~R~~~~~~~~~~~~~--mgqilSi~mIl~Gi~~~~~~~~k~~~ 279 (287)
T COG0682 229 YGLFRFFIEFFREPDLMLGGLIRIL--MGQILSIPMILLGLWLIIYLYKKAKK 279 (287)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 9988873101106746665688875--13999999999999999999775037
No 5
>PRK13108 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=100.00 E-value=0 Score=471.28 Aligned_cols=252 Identities=21% Similarity=0.403 Sum_probs=220.4
Q ss_pred CCCCHHHEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 89911216357622589999999999999999999972234220002333445557346788899999998746778999
Q gi|254780411|r 14 PNLNPVALSLGPIAIRWYGLAYLVGMLFGIWYIQYLLGKPALWTEKQNNENLVYKEGDCQESCFFWLAISVIVGGRIMYV 93 (288)
Q Consensus 14 p~~~Pvlf~iGp~~I~~YGlm~~lGi~~g~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~~l~~~~ii~giiGARl~yv 93 (288)
|+.+.-.|++||++|||||+|+++|+++++|+..++.+++|. +++.+.|+++|+++.||+|||++||
T Consensus 9 PSP~~~vf~LGPl~IRwYaL~Il~GIlvA~wLa~RR~~~rG~-------------~~d~v~DlalwaVP~GIIGARLYhV 75 (460)
T PRK13108 9 PSPPRGVWYLGPLPVRAYAVCVITGIIVALLIGDRRLTARGG-------------ERGMTYDIALWAVPFGLIGGRLYHL 75 (460)
T ss_pred CCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-------------CHHHHHHHHHHHHHHHHHHHEEEEE
T ss_conf 998988378777338999999999999999999999997298-------------8889999999999989711416788
Q ss_pred HHCCHHHHHH---HH-HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 7108787421---14-4432200043100279899999998888754998124100013677899999987765566631
Q gi|254780411|r 94 LFYNWQVFWN---SP-LHIFFLWEGGMSFHGGLIGAFVSLFLLSRIYCFSFLLFLDLVAASVPVGIFLGRIANFINGELW 169 (288)
Q Consensus 94 lf~~~~~y~~---~p-~~i~~iw~GGls~~Gg~ig~~~~~~~~~~~~~~~~~~~~D~~ap~~~lg~~iGRiGcf~nge~~ 169 (288)
+| +|+.|.. || .++++||+|||+||||+++++++++++||++|+++++++|++||++++||+|||||||||||+|
T Consensus 76 if-~w~~Yfg~~~~pl~ei~~IWeGGLaI~GaligG~lgawi~~Rrrgi~f~~~aDavAPgllLAQAIGRwGNFFNQELy 154 (460)
T PRK13108 76 AT-DWRTYFGDGGAGLAAALRIWDGGLGIWGAVTLGVMGAWIGCRRCGIPLPVLLDAVAPGVVLAQAIGRLGNYFNQELY 154 (460)
T ss_pred EC-CHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCHHHHHHCHHHC
T ss_conf 52-57895588788999999884574214558999999999999980897889999973567999984404643051223
Q ss_pred CCCCCCCCCCCCC-----CCH----H----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 1234474333363-----200----1----------12322245899998666766677765443105842206799999
Q gi|254780411|r 170 GRVSWVPWAMVFP-----DGG----S----------LPRHPSQLYEAITEGLMIFLIMQLMVYRGSFKSPGLTAGAFAIC 230 (288)
Q Consensus 170 G~~t~~pwgv~fp-----~~~----~----------~p~hPtqLYEa~~~~l~~~~ll~~~~~~~~~~~~G~~~~~yl~~ 230 (288)
|+||++|||+..+ .+. . ...|||+||||+||++++.+++|+- ||.+.++|++|++|+++
T Consensus 155 GrPTdLPWGLeI~~~~~p~g~~~~~~~~G~~~g~v~~~fHPTFLYEsLWNl~va~lLl~ld--Rr~~L~~GrlFalYV~~ 232 (460)
T PRK13108 155 GRETTMPWGLEIFYRRDPSGFDVPNSLDGVSTGQVAFVVQPTFLYELIWNVLVFVALIYID--RRFIIGHGRLFGFYVAF 232 (460)
T ss_pred CCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHEEC--CCCCCCCCCHHHHHHHH
T ss_conf 8988886401355013865456753346655665566517338999999999999973022--13047783389999999
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 9999999877106721102443112248999999999999999999835787533
Q gi|254780411|r 231 YSVVRFFMEFFREPDYQLGYLLGGWMTMGMILSILPFLVGVGMVFQSMNSKSGSS 285 (288)
Q Consensus 231 Y~~~Rf~iEf~R~~~~~~~~~~~~~ls~~Q~~sl~~~i~g~~l~~~~~~~~~~~~ 285 (288)
|+++||++|.+|.|++.. ..+++.+||+|+++++.++++++...|.|.+..
T Consensus 233 Ys~GRfwIE~LRiD~A~~----i~GlRlN~WtS~~Vf~gAv~y~~~a~~~r~~p~ 283 (460)
T PRK13108 233 YCAGRFCVELLRDDPATL----IAGIRINSFTSTFVFIGAVVYIILAPKGREAPG 283 (460)
T ss_pred HHHHHHHHHHHHCCHHHH----CCCEEEEHHHHHHHHHHHHHHHHCCCCCCCCHH
T ss_conf 988888555551061233----041241137899999999999833746788836
No 6
>TIGR00544 lgt prolipoprotein diacylglyceryl transferase; InterPro: IPR001640 Prolipoprotein diacylglyceryl transferase is the bacterial enzyme that catalyzes the first step in lipoprotein biogenesis, it transfers the n-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins. Prolipoprotein diacylglyceryl transferase (gene lgt) is an integral membrane protein.; GO: 0016740 transferase activity, 0009249 protein lipoylation, 0016020 membrane.
Probab=100.00 E-value=0 Score=316.48 Aligned_cols=265 Identities=40% Similarity=0.712 Sum_probs=227.2
Q ss_pred HHHCCCCCCHHHEEECC--CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 97528899112163576--2258999999999999999999997223422000233344555734678889999999874
Q gi|254780411|r 9 SILTYPNLNPVALSLGP--IAIRWYGLAYLVGMLFGIWYIQYLLGKPALWTEKQNNENLVYKEGDCQESCFFWLAISVIV 86 (288)
Q Consensus 9 ~~~~yp~~~Pvlf~iGp--~~I~~YGlm~~lGi~~g~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~~l~~~~ii~gii 86 (288)
+...+|+++|++|++|+ +++||||+++++|++.+.+.+.++..+++. ......|..++++++++++.++
T Consensus 4 ~~~~~p~~~p~~f~~G~~g~~~~Wyg~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~ 74 (358)
T TIGR00544 4 SILLYPPWDPVAFSLGGPGIPLHWYGLIYALGILFGILLAVRRLNRDNK---------RRGIQKDEFEDLLFWAVLGAIL 74 (358)
T ss_pred CCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC---------CCCCCHHHHHHHHHHHHHHHHH
T ss_conf 4334677775158756896400378899999999999999998614775---------5688514689999999998862
Q ss_pred HHHHHHHHHCCH-HHHHHHHHHHHHHHCC--------CCCHHHHHHHHHHHHHHHH------------------------
Q ss_conf 677899971087-8742114443220004--------3100279899999998888------------------------
Q gi|254780411|r 87 GGRIMYVLFYNW-QVFWNSPLHIFFLWEG--------GMSFHGGLIGAFVSLFLLS------------------------ 133 (288)
Q Consensus 87 GARl~yvlf~~~-~~y~~~p~~i~~iw~G--------Gls~~Gg~ig~~~~~~~~~------------------------ 133 (288)
|||++|+++|++ ++|.+||+.++.+|+| |+++|||++|++++.+++.
T Consensus 75 g~r~~~~~~~~~~~~~~~~~~~~~~~~~gh~~f~g~~G~~~hGg~~g~~~~~~~~~n~~l~~~~~~~~~~~~ll~~~~~~ 154 (358)
T TIGR00544 75 GARLGYVLFYWPSGYYLAHPLNIFRPWDGHGNFTGFRGLAIHGGLLGAIIAGLIFSNTFLNNKTNKTKTTAELLNNKNEI 154 (358)
T ss_pred HHHHHHHEEECCCCCHHCCCCHHEEEECCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHH
T ss_conf 01232110011464001043011000024554000021121004899999999886322013332035688874150023
Q ss_pred ----HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-----------CCCCCCCCCC--------------
Q ss_conf ----75499812410001367789999998776556663112344-----------7433336320--------------
Q gi|254780411|r 134 ----RIYCFSFLLFLDLVAASVPVGIFLGRIANFINGELWGRVSW-----------VPWAMVFPDG-------------- 184 (288)
Q Consensus 134 ----~~~~~~~~~~~D~~ap~~~lg~~iGRiGcf~nge~~G~~t~-----------~pwgv~fp~~-------------- 184 (288)
+.++.++++++|..+|++++|+++||||||+|+|.+|+++. .||+..+|..
T Consensus 155 ~~~~~~~~~~~~~~~d~~~p~~~~G~~~Gr~gnf~n~e~~G~~~~~~~~~p~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 234 (358)
T TIGR00544 155 KAVYRERNLSFWKLLDLIAPAVPLGQAIGRWGNFFNQELYGRALPGGINDPNALANFPWGLLIPGAPKFDSLLGLWIWPG 234 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCC
T ss_conf 34444456778888888888988777876666542101203102464211145542023442255403566776554100
Q ss_pred ---HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHHHHHHHCCCC------------
Q ss_conf ---01123222458999986-6676667776544310---5842206799999999999987710672------------
Q gi|254780411|r 185 ---GSLPRHPSQLYEAITEG-LMIFLIMQLMVYRGSF---KSPGLTAGAFAICYSVVRFFMEFFREPD------------ 245 (288)
Q Consensus 185 ---~~~p~hPtqLYEa~~~~-l~~~~ll~~~~~~~~~---~~~G~~~~~yl~~Y~~~Rf~iEf~R~~~------------ 245 (288)
+..||||+||||+++++ .++++++.+..+..+. .+.|.++..|+++|++.|+++|++|+||
T Consensus 235 ~~~~~~~~~P~~l~e~~~~g~~~~~~~~~~~~~~~~~p~~~~~g~~~~~y~~~y~~~r~~~e~~r~~~~~lg~~~~~~p~ 314 (358)
T TIGR00544 235 DLIDGLPRHPSFLYESFLEGFVVLFLLLLLFIKGLRPPEKIYDGTIFGVYLLGYGLFRFIIEGLREPDKELGFIITYKPI 314 (358)
T ss_pred HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCEEEEEHHH
T ss_conf 22101001147899988747999999999997157871132103677889999889988876215740130322330034
Q ss_pred CHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 1102443112248999999999999999999835787
Q gi|254780411|r 246 YQLGYLLGGWMTMGMILSILPFLVGVGMVFQSMNSKS 282 (288)
Q Consensus 246 ~~~~~~~~~~ls~~Q~~sl~~~i~g~~l~~~~~~~~~ 282 (288)
...........+++|.+++.+++.++++..+.+++++
T Consensus 315 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 351 (358)
T TIGR00544 315 LQLTGSLFLNISMGQILSLLGILGGLFLLLLAYKLSD 351 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 5642356778888899999999999999987641355
No 7
>KOG4332 consensus
Probab=88.32 E-value=0.94 Score=22.82 Aligned_cols=143 Identities=18% Similarity=0.215 Sum_probs=70.3
Q ss_pred EECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH-
Q ss_conf 3576225899999999999999999999722342200023-33445557346788899999998746778999710878-
Q gi|254780411|r 22 SLGPIAIRWYGLAYLVGMLFGIWYIQYLLGKPALWTEKQN-NENLVYKEGDCQESCFFWLAISVIVGGRIMYVLFYNWQ- 99 (288)
Q Consensus 22 ~iGp~~I~~YGlm~~lGi~~g~~~~~~~~~r~~~~~~~~~-~~~~~~~~~~~i~~l~~~~ii~giiGARl~yvlf~~~~- 99 (288)
+||-+-|-..|--+..|.++|-. +.++.||+..-..-.. ......+-..+..-+..--++|||--+-++-. |+.|-
T Consensus 73 ~IgqLfiaGfgSsmLFGtivgSL-aDkqGRKracvtycitYiLsCiTKhSpqYkVLmVGR~LGGiaTsLLFSa-FEsWli 150 (454)
T KOG4332 73 DIGQLFIAGFGSSMLFGTIVGSL-ADKQGRKRACVTYCITYILSCITKHSPQYKVLMVGRVLGGIATSLLFSA-FESWLI 150 (454)
T ss_pred CCCEEEECCCCHHHHHHHHHHHH-HHHHCCCCCEEEEHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHH-HHHHHH
T ss_conf 01102210141478899898887-7662565401410388999998604875378752545501789999999-999998
Q ss_pred -------HHHHHHH-----HHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf -------7421144-----4322000431002798999999988887549981241000136778999999877655666
Q gi|254780411|r 100 -------VFWNSPL-----HIFFLWEGGMSFHGGLIGAFVSLFLLSRIYCFSFLLFLDLVAASVPVGIFLGRIANFINGE 167 (288)
Q Consensus 100 -------~y~~~p~-----~i~~iw~GGls~~Gg~ig~~~~~~~~~~~~~~~~~~~~D~~ap~~~lg~~iGRiGcf~nge 167 (288)
.|-+.++ +..+.|+|=+++.-|+.|-.++- .-.+-...-.|++++-+++|.++. ++++ +|
T Consensus 151 aEHnekr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd-----~~slGPVAPFdAAacfLaigmAvi-l~~W--~E 222 (454)
T KOG4332 151 AEHNEKRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVD-----TFSLGPVAPFDAAACFLAIGMAVI-LSSW--SE 222 (454)
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-----HHCCCCCCCHHHHHHHHHHHHHHH-HHHH--HH
T ss_conf 875331497276545788888985033999999888888898-----736688770377779999989999-7346--44
Q ss_pred HCCCCCC
Q ss_conf 3112344
Q gi|254780411|r 168 LWGRVSW 174 (288)
Q Consensus 168 ~~G~~t~ 174 (288)
-||+|++
T Consensus 223 Nygdps~ 229 (454)
T KOG4332 223 NYGDPSE 229 (454)
T ss_pred CCCCHHH
T ss_conf 0699135
No 8
>PRK10478 putative fructose-like permease EIIC subunit 2; Provisional
Probab=69.28 E-value=7.4 Score=17.74 Aligned_cols=37 Identities=19% Similarity=0.246 Sum_probs=24.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 0431002798999999988887549981241000136
Q gi|254780411|r 113 EGGMSFHGGLIGAFVSLFLLSRIYCFSFLLFLDLVAA 149 (288)
Q Consensus 113 ~GGls~~Gg~ig~~~~~~~~~~~~~~~~~~~~D~~ap 149 (288)
+.|-.|.||+++|.+++|+....+|+++-+.++-..|
T Consensus 98 ~~~aGFlGaii~GflaGy~v~~lkkiklp~~l~~l~p 134 (359)
T PRK10478 98 SFGAGFFGALIAGIIGGIVVHYLKKIPVHKVLRSVMP 134 (359)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCC
T ss_conf 2675158999999999999999986799655651156
No 9
>PRK09765 2-O-a-mannosyl-D-glycerate specific PTS transporten components IIABC; Provisional
Probab=59.69 E-value=11 Score=16.68 Aligned_cols=23 Identities=22% Similarity=0.556 Sum_probs=17.9
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 04310027989999999888875
Q gi|254780411|r 113 EGGMSFHGGLIGAFVSLFLLSRI 135 (288)
Q Consensus 113 ~GGls~~Gg~ig~~~~~~~~~~~ 135 (288)
..|-.|.||+++|.+++|+..+.
T Consensus 376 ~~~aGFlGaii~GflaGy~v~~l 398 (638)
T PRK09765 376 MIGSGFLGAVVGGLIAGYLMRWV 398 (638)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 25640789999999999999999
No 10
>KOG3703 consensus
Probab=59.03 E-value=5.6 Score=18.42 Aligned_cols=36 Identities=31% Similarity=0.327 Sum_probs=21.1
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 76556663112344743333632001123222458999
Q gi|254780411|r 161 ANFINGELWGRVSWVPWAMVFPDGGSLPRHPSQLYEAI 198 (288)
Q Consensus 161 Gcf~nge~~G~~t~~pwgv~fp~~~~~p~hPtqLYEa~ 198 (288)
---++.| .|.|||.+.+|.=.+.+..|+| +|||||-
T Consensus 403 Nk~FA~e-hgiPtd~gYavaPhHsGVyPvH-~qLy~AW 438 (873)
T KOG3703 403 NKKFALE-HGIPTDMGYAVAPHHSGVYPVH-EQLYEAW 438 (873)
T ss_pred HHHHHHH-CCCCCCCCCCCCCCCCCCCHHH-HHHHHHH
T ss_conf 6888986-3998676641156667764279-9999999
No 11
>pfam09512 ThiW Thiamine-precursor transporter protein (ThiW). Levels of thiamine pyrophosphate (TPP) or thiamine regulate transcription or translation of a number of thiamine biosynthesis, salvage, or transport genes in a wide range of prokaryotes. The mechanism involves direct binding, with no protein involved, to a structural element called THI found in the untranslated upstream region of thiamine metabolism gene operons. This element is called a riboswitch and is seen also for other metabolites such as FMN and glycine. This protein family consists of proteins identified in operons controlled by the THI riboswitch and designated ThiW. The hydrophobic nature of this protein and reconstructed metabolic background suggests that this protein acts in transport of a thiazole precursor of thiamine.
Probab=57.04 E-value=13 Score=16.42 Aligned_cols=37 Identities=14% Similarity=0.308 Sum_probs=27.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 3100279899999998888754998124100013677
Q gi|254780411|r 115 GMSFHGGLIGAFVSLFLLSRIYCFSFLLFLDLVAASV 151 (288)
Q Consensus 115 Gls~~Gg~ig~~~~~~~~~~~~~~~~~~~~D~~ap~~ 151 (288)
=+++-|+++|+.++.+.|.+.+|.......+..-.++
T Consensus 66 ~lAfpGsm~GAllaGl~yr~~k~~~~A~lGEviGTGi 102 (150)
T pfam09512 66 LLAFPGSMFGALLAGLLYRYTRKLYLAALGEVIGTGI 102 (150)
T ss_pred HHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf 4224773389999999999928504677663766589
No 12
>PRK11404 putative PTS transporter components IIBC; Provisional
Probab=56.80 E-value=10 Score=16.95 Aligned_cols=35 Identities=11% Similarity=0.153 Sum_probs=24.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 04310027989999999888875499812410001
Q gi|254780411|r 113 EGGMSFHGGLIGAFVSLFLLSRIYCFSFLLFLDLV 147 (288)
Q Consensus 113 ~GGls~~Gg~ig~~~~~~~~~~~~~~~~~~~~D~~ 147 (288)
++|-.|.||+++|.+++|+..+.+|+++-+.++-.
T Consensus 224 ~~gaGFLGaii~GflaGY~v~~lkkiklpk~l~gl 258 (482)
T PRK11404 224 QSGAGFLGAVVLGLAIGYFVFWFRKVRLGKALQPL 258 (482)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCC
T ss_conf 56604899999999999999999747775214314
No 13
>TIGR02359 thiW thiW protein; InterPro: IPR012652 Levels of thiamine pyrophosphate (TPP) or thiamine regulate transcription or translation of a number of thiamine biosynthesis, salvage, or transport genes in a wide range of prokaryotes. The mechanism involves direct binding, with no protein involved, to a structural element called THI found in the untranslated upstream region of thiamine metabolism gene operons. This element is called a riboswitch and is seen also for other metabolites such as FMN and glycine. This protein family consists of proteins identified in operons controlled by the THI riboswitch and designated ThiW. The hydrophobic nature of this protein and reconstructed metabolic background suggests that this protein acts in transport of a thiazole precursor of thiamine..
Probab=55.55 E-value=11 Score=16.77 Aligned_cols=32 Identities=22% Similarity=0.296 Sum_probs=19.3
Q ss_pred CCCHHHHHHHHHHHHH----HHHHHCCCCHHHHHHH
Q ss_conf 3100279899999998----8887549981241000
Q gi|254780411|r 115 GMSFHGGLIGAFVSLF----LLSRIYCFSFLLFLDL 146 (288)
Q Consensus 115 Gls~~Gg~ig~~~~~~----~~~~~~~~~~~~~~D~ 146 (288)
=+++-||++|+.++.+ +|-+.||.-.-.+.+.
T Consensus 69 ~lAfPGg~~GAl~agl~A~Alyr~~r~~~~a~lgE~ 104 (166)
T TIGR02359 69 VLAFPGGMIGALLAGLAAVALYRFGRKHYLASLGEV 104 (166)
T ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 667212389999999999999984344236244555
No 14
>pfam02378 PTS_EIIC Phosphotransferase system, EIIC. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The sugar-specific permease of the PTS consists of three domains (IIA, IIB and IIC). The IIC domain catalyses the transfer of a phosphoryl group from IIB to the sugar substrate.
Probab=53.97 E-value=14 Score=16.13 Aligned_cols=118 Identities=12% Similarity=-0.003 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHH
Q ss_conf 8999999999999999999997223422000233344555734678889999999874-677899971087874211444
Q gi|254780411|r 29 RWYGLAYLVGMLFGIWYIQYLLGKPALWTEKQNNENLVYKEGDCQESCFFWLAISVIV-GGRIMYVLFYNWQVFWNSPLH 107 (288)
Q Consensus 29 ~~YGlm~~lGi~~g~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~~l~~~~ii~gii-GARl~yvlf~~~~~y~~~p~~ 107 (288)
-....+-.+++++++-++.+.+|+++. +.... ...+.+.-.. -.-.... ...+ ...-..
T Consensus 46 ~~~~~f~~l~l~~a~~ia~~la~~~~~---------------~~~~~-~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~ 105 (313)
T pfam02378 46 AGSAAFGILPLLFAIGIAYGLAKGGKG---------------VAGAA-GLIGLLAFNLLAPISVLL--LAAG--ANGYGN 105 (313)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCC---------------CHHHH-HHHHHHHHHHHHHHHHHH--HCCC--CCCCCE
T ss_conf 999999999999999999999726997---------------36999-999999999998888763--1035--542101
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHCC-----CC------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 322000431002798999999988887549-----98------124100013677899999987765566
Q gi|254780411|r 108 IFFLWEGGMSFHGGLIGAFVSLFLLSRIYC-----FS------FLLFLDLVAASVPVGIFLGRIANFING 166 (288)
Q Consensus 108 i~~iw~GGls~~Gg~ig~~~~~~~~~~~~~-----~~------~~~~~D~~ap~~~lg~~iGRiGcf~ng 166 (288)
+...+.|+....++++.++++.+++++.+| +| ..+..+...|.......++=++++...
T Consensus 106 ~~~~~~~~~g~~~aii~~ll~~~i~~~~~k~~~ik~P~~v~~~~~~~f~~li~~~~~~~~~~~i~~~i~~ 175 (313)
T pfam02378 106 ILGIGTGGTGVFGAIIVGLLAAELYNRFEKNITIKLPDSLPFFVGPRFVPIITGFVTLLVIGPVLGLIWP 175 (313)
T ss_pred EEHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 0011453002199999999999999999987230288632233332289899999999999999999999
No 15
>KOG1278 consensus
Probab=52.32 E-value=15 Score=15.97 Aligned_cols=24 Identities=29% Similarity=0.591 Sum_probs=17.8
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 4310584220679999999999998
Q gi|254780411|r 214 RGSFKSPGLTAGAFAICYSVVRFFM 238 (288)
Q Consensus 214 ~~~~~~~G~~~~~yl~~Y~~~Rf~i 238 (288)
.|.....|. .++|+..|++.=|+.
T Consensus 555 WRsF~~sG~-~avY~fiYsi~Y~~~ 578 (628)
T KOG1278 555 WRSFLTSGS-SAVYVFIYSIFYFFT 578 (628)
T ss_pred HHEEECCCC-CHHHHHHHHHHHHHE
T ss_conf 120222676-112577887866520
No 16
>PRK10712 fructose-specific PTS system IIBC component; Provisional
Probab=50.04 E-value=17 Score=15.76 Aligned_cols=33 Identities=21% Similarity=0.433 Sum_probs=21.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHC-CCCHHHHHH
Q ss_conf 043100279899999998888754-998124100
Q gi|254780411|r 113 EGGMSFHGGLIGAFVSLFLLSRIY-CFSFLLFLD 145 (288)
Q Consensus 113 ~GGls~~Gg~ig~~~~~~~~~~~~-~~~~~~~~D 145 (288)
+.|-.|.||+++|.+++|+....+ ++++-+.++
T Consensus 311 ~~gaGFLGgii~GflaGY~v~~lk~~iklPk~l~ 344 (563)
T PRK10712 311 STGSGFIGGIIAGFLAGYIAKLISTKLKLPQSME 344 (563)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
T ss_conf 0575058899999999999999997477876675
No 17
>PRK00376 lspA lipoprotein signal peptidase; Reviewed
Probab=47.41 E-value=18 Score=15.52 Aligned_cols=25 Identities=28% Similarity=0.415 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 3677899999987765566631123447
Q gi|254780411|r 148 AASVPVGIFLGRIANFINGELWGRVSWV 175 (288)
Q Consensus 148 ap~~~lg~~iGRiGcf~nge~~G~~t~~ 175 (288)
+.++.+| |-+||...--.+|..+|.
T Consensus 97 ~l~li~g---GaiGNliDR~~~G~VvDF 121 (162)
T PRK00376 97 AYALILG---GALGNLIDRFFHGHVVDF 121 (162)
T ss_pred HHHHHHH---HHHHHHHHHHCCCCCCEE
T ss_conf 9999998---664228899717977658
No 18
>PRK12468 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=45.39 E-value=15 Score=15.94 Aligned_cols=10 Identities=50% Similarity=1.006 Sum_probs=5.5
Q ss_pred HHHHHHHHHH
Q ss_conf 2245899998
Q gi|254780411|r 191 PSQLYEAITE 200 (288)
Q Consensus 191 PtqLYEa~~~ 200 (288)
|.++||++.+
T Consensus 333 P~ely~aVA~ 342 (383)
T PRK12468 333 PATLYAAVAE 342 (383)
T ss_pred CHHHHHHHHH
T ss_conf 9999999999
No 19
>PRK02110 disulfide bond formation protein B; Provisional
Probab=43.88 E-value=21 Score=15.21 Aligned_cols=23 Identities=13% Similarity=-0.050 Sum_probs=15.3
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 11224899999999999999999
Q gi|254780411|r 253 GGWMTMGMILSILPFLVGVGMVF 275 (288)
Q Consensus 253 ~~~ls~~Q~~sl~~~i~g~~l~~ 275 (288)
.-++|++||.-+..++..+..++
T Consensus 137 flGLsmp~Wsli~F~~~~i~~l~ 159 (169)
T PRK02110 137 ILGLSLPGWALIAFVLIAVAVAV 159 (169)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 21678999999999999999999
No 20
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=43.76 E-value=21 Score=15.19 Aligned_cols=49 Identities=14% Similarity=0.286 Sum_probs=36.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 2067999999999999877106721102443112248999999999999999999
Q gi|254780411|r 222 LTAGAFAICYSVVRFFMEFFREPDYQLGYLLGGWMTMGMILSILPFLVGVGMVFQ 276 (288)
Q Consensus 222 ~~~~~yl~~Y~~~Rf~iEf~R~~~~~~~~~~~~~ls~~Q~~sl~~~i~g~~l~~~ 276 (288)
.+...|.+|-|++--.+-.+-. ..+...+|..|++++.++++|+.++=.
T Consensus 55 pvgvAYAiWsGvG~~~itlig~------~~F~E~l~~~~~~gi~lIi~GVv~l~~ 103 (120)
T PRK10452 55 ALGVAYALWEGIGILFITLFSV------LLFDESLSLMKIAGLTTLVAGIVLIKS 103 (120)
T ss_pred CHHHHHHHHHHHHHHHHHHHHH------HHHCCCCCHHHHHHHHHHHHHHHEEEC
T ss_conf 2799999999899999999999------996798979999999999987840424
No 21
>TIGR01478 STEVOR variant surface antigen, stevor family; InterPro: IPR006374 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see . This entry represents the stevor (short for "subtelomeric variable open reading frame") family of predicted variant surface antigens. This is the third largest variant surface antigen family in P. falciparum, with 33 genes identified in the genome of this parasite . The function of these proteins is not known, but they are expressed during several stages of the parasite life-cycle and may play a variety of roles in parasite survival and infection ..
Probab=43.12 E-value=22 Score=15.14 Aligned_cols=20 Identities=10% Similarity=0.022 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHCCCCC
Q ss_conf 99999999999998357875
Q gi|254780411|r 264 ILPFLVGVGMVFQSMNSKSG 283 (288)
Q Consensus 264 l~~~i~g~~l~~~~~~~~~~ 283 (288)
++++++=++|++|-+||||.
T Consensus 284 i~L~V~LIiLYIWLYrRRK~ 303 (315)
T TIGR01478 284 IILTVVLIILYIWLYRRRKK 303 (315)
T ss_pred HHHHHHHHHHHHHHHHHCCH
T ss_conf 99999999998888564030
No 22
>PRK10472 low affinity gluconate transporter; Provisional
Probab=39.21 E-value=25 Score=14.78 Aligned_cols=128 Identities=17% Similarity=0.151 Sum_probs=58.1
Q ss_pred HCCCCCCHHH------EEECCCHHHHHHHHHHH-H-HHHHHHHHHHHHHCCCCCCCCCCCC--CCCCCCHHHHHHHHHHH
Q ss_conf 5288991121------63576225899999999-9-9999999999972234220002333--44555734678889999
Q gi|254780411|r 11 LTYPNLNPVA------LSLGPIAIRWYGLAYLV-G-MLFGIWYIQYLLGKPALWTEKQNNE--NLVYKEGDCQESCFFWL 80 (288)
Q Consensus 11 ~~yp~~~Pvl------f~iGp~~I~~YGlm~~l-G-i~~g~~~~~~~~~r~~~~~~~~~~~--~~~~~~~~~i~~l~~~~ 80 (288)
+..|+..|.+ -++|..-+ ||+..++ . ++.++++.++..||...+.+...++ .-..+.+.....+....
T Consensus 157 lvPPtPGPla~a~~lgadlG~~il--~Gliv~ip~~ii~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~lPs~~~s~~~il 234 (445)
T PRK10472 157 FLLPGPAPMLLASQMNADFGWMIL--IGLCAAIPGMIIAGPLWGNFISRYVELHIPDDISEPHLGEGKMPSFGFSLSLIL 234 (445)
T ss_pred CCCCCCCHHHHHHHCCCCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 279998389999871996679999--999999999999999999998503688897432334556667997289999999
Q ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHH
Q ss_conf 99987467789997108787421144432200043100279899999998888754998124100
Q gi|254780411|r 81 AISVIVGGRIMYVLFYNWQVFWNSPLHIFFLWEGGMSFHGGLIGAFVSLFLLSRIYCFSFLLFLD 145 (288)
Q Consensus 81 ii~giiGARl~yvlf~~~~~y~~~p~~i~~iw~GGls~~Gg~ig~~~~~~~~~~~~~~~~~~~~D 145 (288)
++-.++..+-..-.+.+.+--. .+++..- |--.---++|..++.+...++++.+-.+..|
T Consensus 235 lPi~Li~l~ti~~~~~~~~~~~---~~~l~f~--G~P~iALlig~l~a~~~l~~~~~~~~~~v~~ 294 (445)
T PRK10472 235 LPLVLVGLKTIAARFVPEGSTA---YEWFEFI--GHPFTAILVACLVAIYGLAMRQGMPKDKVME 294 (445)
T ss_pred HHHHHHHHHHHHHHHCCCCCHH---HHHHHHH--CCCHHHHHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 9999999999898615776319---9999997--4817999999999999998713887999999
No 23
>COG1377 FlhB Flagellar biosynthesis pathway, component FlhB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=36.43 E-value=28 Score=14.53 Aligned_cols=10 Identities=50% Similarity=1.072 Sum_probs=8.1
Q ss_pred HHHHHHHHHH
Q ss_conf 2245899998
Q gi|254780411|r 191 PSQLYEAITE 200 (288)
Q Consensus 191 PtqLYEa~~~ 200 (288)
|.++|+++.+
T Consensus 333 P~e~y~aVae 342 (363)
T COG1377 333 PEELYKAVAE 342 (363)
T ss_pred CHHHHHHHHH
T ss_conf 9999999999
No 24
>pfam05631 DUF791 Protein of unknown function (DUF791). This family consists of several eukaryotic proteins of unknown function.
Probab=36.06 E-value=28 Score=14.49 Aligned_cols=88 Identities=15% Similarity=0.117 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC-CC--------CCCCCCHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q ss_conf 41000136778999999877655666311234474-33--------336320011232224-589999866676667776
Q gi|254780411|r 142 LFLDLVAASVPVGIFLGRIANFINGELWGRVSWVP-WA--------MVFPDGGSLPRHPSQ-LYEAITEGLMIFLIMQLM 211 (288)
Q Consensus 142 ~~~D~~ap~~~lg~~iGRiGcf~nge~~G~~t~~p-wg--------v~fp~~~~~p~hPtq-LYEa~~~~l~~~~ll~~~ 211 (288)
.=.|.+++.++++..+.. .++ .|.||.+++.. .. .+..|+.-...-=+| |+|+.-+ .|+.+|-=
T Consensus 196 aPF~~A~~~L~i~~~~i~-~~W--~ENyG~~s~~~~~~~~~~~a~~~i~~d~~il~LG~iQSLFEgsMY---iFVFlWTP 269 (354)
T pfam05631 196 APFDAAACFLAIGMAIIL-NTW--SENYGDPSDKKDLKEQFKVAAQAIASDPNVFCLGLVQSLFEGSMY---TFVFLWTP 269 (354)
T ss_pred CCHHHHHHHHHHHHHHHH-CCC--HHCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH---HHEEEECC
T ss_conf 836999999999999997-444--020599766502678999999999728017999999999887687---50556436
Q ss_pred HHHH--HCCCCCCHHHHHHHHHHHHH
Q ss_conf 5443--10584220679999999999
Q gi|254780411|r 212 VYRG--SFKSPGLTAGAFAICYSVVR 235 (288)
Q Consensus 212 ~~~~--~~~~~G~~~~~yl~~Y~~~R 235 (288)
.... ...+.|.+|..++..--++-
T Consensus 270 aL~~~~~~iP~GlIFs~FM~a~MlGS 295 (354)
T pfam05631 270 ALSPNDEEIPHGFIFATFMLASMLGS 295 (354)
T ss_pred CCCCCCCCCCCEEHHHHHHHHHHHHH
T ss_conf 53899999995013998999999877
No 25
>pfam09578 Spore_YabQ Spore cortex protein YabQ (Spore_YabQ). This protein is predicted to span the membrane several times. It is only found in genomes of species that perform sporulation, such as Bacillus subtilis, Clostridium tetani, and other members of the Firmicutes (low-GC Gram-positive bacteria). Mutation of this sigmaE-dependent gene blocks development of the spore cortex. The length of the C-terminal region, which includes some hydrophobic regions, is variable.
Probab=35.26 E-value=29 Score=14.42 Aligned_cols=47 Identities=26% Similarity=0.369 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999722342200023334455573467888999999987467
Q gi|254780411|r 33 LAYLVGMLFGIWYIQYLLGKPALWTEKQNNENLVYKEGDCQESCFFWLAISVIVGG 88 (288)
Q Consensus 33 lm~~lGi~~g~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~~l~~~~ii~giiGA 88 (288)
.|...|+.+|..+=.++.-|+.....+ --..++|+++|.+.+.++..
T Consensus 3 ~~v~~G~~lg~~yD~yr~~r~~~~~~~---------~~~~ieDilfWi~~~~~vF~ 49 (80)
T pfam09578 3 AMVLAGIILGFLYDIYRVFRKVFRPSK---------ILTFIEDILFWLLAALIVFY 49 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCH---------HHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999998845330---------89999999999999999999
No 26
>COG2261 Predicted membrane protein [Function unknown]
Probab=31.92 E-value=33 Score=14.10 Aligned_cols=75 Identities=21% Similarity=0.167 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHC
Q ss_conf 99999999999999997223422000233344555734678889999999874677899971087874211444322000
Q gi|254780411|r 34 AYLVGMLFGIWYIQYLLGKPALWTEKQNNENLVYKEGDCQESCFFWLAISVIVGGRIMYVLFYNWQVFWNSPLHIFFLWE 113 (288)
Q Consensus 34 m~~lGi~~g~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~~l~~~~ii~giiGARl~yvlf~~~~~y~~~p~~i~~iw~ 113 (288)
.+.+|.++|+. +.+..+++. .... +..++-|++||=+...++..+..+. |. -
T Consensus 6 ~IIiG~iaG~l-A~~i~~g~~--------------~~G~-----~~nIilGIVGA~vg~~l~~~~g~~~--~~------~ 57 (82)
T COG2261 6 WIIIGLIAGWL-AGKIMPGGG--------------GGGI-----FMNIILGIVGAFVGGWLLGALGFGG--PG------G 57 (82)
T ss_pred HHHHHHHHHHH-HHHHCCCCC--------------CCCH-----HHHHHHHHHHHHHHHHHHHHHCCCC--CC------C
T ss_conf 99999999999-998607999--------------9603-----8999999999999989999856788--86------1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 43100279899999998888754
Q gi|254780411|r 114 GGMSFHGGLIGAFVSLFLLSRIY 136 (288)
Q Consensus 114 GGls~~Gg~ig~~~~~~~~~~~~ 136 (288)
.+.++..+++|+++..+.+...+
T Consensus 58 ~~~~~i~avIGAvIll~i~~~v~ 80 (82)
T COG2261 58 NIASFIVAVIGAVILLAIVRLVR 80 (82)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 38999999999999999999983
No 27
>PRK09821 inner membrane permease YgbN; Provisional
Probab=29.52 E-value=36 Score=13.86 Aligned_cols=40 Identities=23% Similarity=0.371 Sum_probs=21.9
Q ss_pred CCCCCCHHH------EEECCCHHHHHHHHHHH-HHHHHHHHHHHHHHCC
Q ss_conf 288991121------63576225899999999-9999999999997223
Q gi|254780411|r 12 TYPNLNPVA------LSLGPIAIRWYGLAYLV-GMLFGIWYIQYLLGKP 53 (288)
Q Consensus 12 ~yp~~~Pvl------f~iGp~~I~~YGlm~~l-Gi~~g~~~~~~~~~r~ 53 (288)
..|+..|++ .++|-.-+ ||+.+++ ..++++++.++..||.
T Consensus 158 vPPtPGPla~a~~lgadiG~~il--~Glivaip~~~i~~~~~~~~~~~~ 204 (454)
T PRK09821 158 VPPHPGPVAAAGLLHADIGWLTI--IGIAISIPVGIVGYFAAKIINRRQ 204 (454)
T ss_pred CCCCCHHHHHHHHCCCCCCHHHH--HHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 89995899999870887038999--999999999999999999974467
No 28
>pfam08449 UAA UAA transporter family. This family includes transporters with a specificity for UDP-N-acetylglucosamine.
Probab=25.75 E-value=42 Score=13.47 Aligned_cols=31 Identities=19% Similarity=0.234 Sum_probs=24.8
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 3112248999999999999999999835787
Q gi|254780411|r 252 LGGWMTMGMILSILPFLVGVGMVFQSMNSKS 282 (288)
Q Consensus 252 ~~~~ls~~Q~~sl~~~i~g~~l~~~~~~~~~ 282 (288)
++..+|..||++..++..|+.+.-+.+++|+
T Consensus 273 F~~~lt~~~~~G~~lvf~G~~~y~~~k~kk~ 303 (303)
T pfam08449 273 FGNPLTLQQWLGTLLVFLGIFLYAYLKKKKA 303 (303)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 4996858999999999999999999540479
No 29
>PRK09921 permease DsdX; Provisional
Probab=24.97 E-value=44 Score=13.39 Aligned_cols=128 Identities=14% Similarity=0.154 Sum_probs=50.8
Q ss_pred HCCCCCCHHH------EEECCCHHHHHHHHHHH-HHHHHH-HHHHHHHHCCCCCCCCCCCCCCCCC----CHHHHHHHHH
Q ss_conf 5288991121------63576225899999999-999999-9999997223422000233344555----7346788899
Q gi|254780411|r 11 LTYPNLNPVA------LSLGPIAIRWYGLAYLV-GMLFGI-WYIQYLLGKPALWTEKQNNENLVYK----EGDCQESCFF 78 (288)
Q Consensus 11 ~~yp~~~Pvl------f~iGp~~I~~YGlm~~l-Gi~~g~-~~~~~~~~r~~~~~~~~~~~~~~~~----~~~~i~~l~~ 78 (288)
+..|+..|.+ .++|-.-+ ||+.+++ ..+++. ++.++..||...............+ .+.....++.
T Consensus 157 lvPPtPGPlaaa~~lgadlG~~il--~Glivaip~~~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ps~~~sl~~ 234 (445)
T PRK09921 157 VVPPHPAALFVANKLGADIGSVIV--YGLLVGLMASLVGGPLFLKFLGNRLPFKPVPTEFADLEVRDEKTLPSLGATLFT 234 (445)
T ss_pred CCCCCCCHHHHHHHCCCCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCHHHHHH
T ss_conf 479997099999980999436999--999999999999999999998622888888332202122345679961388999
Q ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHH
Q ss_conf 9999987467789997108787421144432200043100279899999998888754998124100
Q gi|254780411|r 79 WLAISVIVGGRIMYVLFYNWQVFWNSPLHIFFLWEGGMSFHGGLIGAFVSLFLLSRIYCFSFLLFLD 145 (288)
Q Consensus 79 ~~ii~giiGARl~yvlf~~~~~y~~~p~~i~~iw~GGls~~Gg~ig~~~~~~~~~~~~~~~~~~~~D 145 (288)
..++-.++..+...-++.+.+-...+..+. +.+ -.--=++|..++.+....|++.+..+..|
T Consensus 235 illPivLi~l~ti~~~~~~~~~~~~~~l~f--lG~---P~iALlig~l~a~~~lg~~~~~~~~~v~~ 296 (445)
T PRK09921 235 VLLPIGLMLVKTVAELNMAKEGTLYTLLEF--IGN---PITAMFIAVFVAYYVLGIRQHMGMGTLLT 296 (445)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHH--HCC---CHHHHHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 999999999999887506887519999999--789---28999999999999998714898999999
No 30
>COG1108 ZnuB ABC-type Mn2+/Zn2+ transport systems, permease components [Inorganic ion transport and metabolism]
Probab=24.76 E-value=44 Score=13.36 Aligned_cols=12 Identities=8% Similarity=-0.128 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHH
Q ss_conf 222458999986
Q gi|254780411|r 190 HPSQLYEAITEG 201 (288)
Q Consensus 190 hPtqLYEa~~~~ 201 (288)
-|+++|+-++..
T Consensus 172 l~v~~~~~l~~~ 183 (274)
T COG1108 172 LNVRLLHYLLLV 183 (274)
T ss_pred CCHHHHHHHHHH
T ss_conf 858899999999
No 31
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=22.16 E-value=50 Score=13.07 Aligned_cols=54 Identities=11% Similarity=0.095 Sum_probs=35.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 422067999999999999877106721102443112248999999999999999999835787
Q gi|254780411|r 220 PGLTAGAFAICYSVVRFFMEFFREPDYQLGYLLGGWMTMGMILSILPFLVGVGMVFQSMNSKS 282 (288)
Q Consensus 220 ~G~~~~~yl~~Y~~~Rf~iEf~R~~~~~~~~~~~~~ls~~Q~~sl~~~i~g~~l~~~~~~~~~ 282 (288)
+-.....+..+-.+.-.+...+= .+..+|..|+++..+++.|+++-.+..|+|+
T Consensus 240 ~a~~~s~~~~l~Pv~av~~g~ll---------LgE~lt~~~~iG~~lil~Gv~l~~~~~r~r~ 293 (299)
T PRK11453 240 ETWRVAPLSLLVPVVGLASAALL---------LDERLTGLQFLGAVLIMAGLYINVFGLRWRK 293 (299)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH---------HCCCCCHHHHHHHHHHHHHHHHHHCCHHHHH
T ss_conf 89999999999989999999999---------1999979999999999999999944614243
No 32
>PRK02971 hypothetical protein; Provisional
Probab=21.88 E-value=28 Score=14.50 Aligned_cols=27 Identities=11% Similarity=0.197 Sum_probs=19.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 224899999999999999999983578
Q gi|254780411|r 255 WMTMGMILSILPFLVGVGMVFQSMNSK 281 (288)
Q Consensus 255 ~ls~~Q~~sl~~~i~g~~l~~~~~~~~ 281 (288)
.+|....+.+.+++.|++++.+..+++
T Consensus 101 ~~s~~K~lGv~lIi~Gv~lI~~p~~~~ 127 (129)
T PRK02971 101 TFSLKKTLGVACIMLGVMLINLPTTKA 127 (129)
T ss_pred CEEHHHHHHHHHHHHHEEEEECCCCCC
T ss_conf 600899888999964112586563023
No 33
>KOG0475 consensus
Probab=21.27 E-value=52 Score=12.96 Aligned_cols=12 Identities=17% Similarity=0.227 Sum_probs=4.7
Q ss_pred HHHHHHHHHHCC
Q ss_conf 999999877106
Q gi|254780411|r 232 SVVRFFMEFFRE 243 (288)
Q Consensus 232 ~~~Rf~iEf~R~ 243 (288)
++.-+.-++.|.
T Consensus 358 aiis~~np~~r~ 369 (696)
T KOG0475 358 AIISLFNPETRF 369 (696)
T ss_pred HHHHCCCHHHHH
T ss_conf 998808888862
No 34
>pfam12062 HSNSD heparan sulfate-N-deacetylase. This family of proteins is are heparan sulfate N-deacetylase enzymes. This protein is found in eukaryotes. This proteinenzyme is often found associated with pfam00685.
Probab=20.81 E-value=53 Score=12.90 Aligned_cols=31 Identities=32% Similarity=0.353 Sum_probs=18.3
Q ss_pred HCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 31123447433336320011232224589999
Q gi|254780411|r 168 LWGRVSWVPWAMVFPDGGSLPRHPSQLYEAIT 199 (288)
Q Consensus 168 ~~G~~t~~pwgv~fp~~~~~p~hPtqLYEa~~ 199 (288)
-.|.||+...+|-=.+.+..|+| .|||||--
T Consensus 390 ~~~ip~~~gYaVaPhHsGVYPvh-~~LY~AWk 420 (487)
T pfam12062 390 EHGIPTDYGYAVAPHHSGVYPVH-EQLYEAWK 420 (487)
T ss_pred HCCCCCCCCCCCCCCCCCCCCCC-HHHHHHHH
T ss_conf 72999898834278778752064-88899999
No 35
>pfam04142 Nuc_sug_transp Nucleotide-sugar transporter. This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. Human solute carrier family 35 member A1 transports CMP-sialic acid, solute carrier family 35 member A2 transports UDP-galactose and solute carrier family 35 member A3 transports UDP-GlcNAc.
Probab=20.60 E-value=54 Score=12.88 Aligned_cols=16 Identities=19% Similarity=0.131 Sum_probs=8.6
Q ss_pred HHHHHCCCCHHHHHHH
Q ss_conf 8887549981241000
Q gi|254780411|r 131 LLSRIYCFSFLLFLDL 146 (288)
Q Consensus 131 ~~~~~~~~~~~~~~D~ 146 (288)
+..-+||++..+|.-.
T Consensus 62 ~~~l~r~lS~~QW~AL 77 (238)
T pfam04142 62 VLMLGRKLSWYQWASL 77 (238)
T ss_pred HHHHCCCCCHHHHHHH
T ss_conf 9998694759999999
No 36
>PRK04388 disulfide bond formation protein B; Provisional
Probab=20.30 E-value=55 Score=12.84 Aligned_cols=28 Identities=11% Similarity=-0.044 Sum_probs=15.3
Q ss_pred CCCCHHHHHHHHHHHHH---HHHHHHHHCCC
Q ss_conf 12248999999999999---99999983578
Q gi|254780411|r 254 GWMTMGMILSILPFLVG---VGMVFQSMNSK 281 (288)
Q Consensus 254 ~~ls~~Q~~sl~~~i~g---~~l~~~~~~~~ 281 (288)
-++|++||.-+..++.+ +...++++|||
T Consensus 139 lGlSmp~Wsli~F~~l~~~~l~~~~r~rr~~ 169 (172)
T PRK04388 139 LGLSMPMWSMVWFVGLALWALYAGFKARRRS 169 (172)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 6828899999999999999999999852568
Done!