Query gi|254780411|ref|YP_003064824.1| prolipoprotein diacylglyceryl transferase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 288
No_of_seqs 131 out of 2251
Neff 6.4
Searched_HMMs 33803
Date Wed Jun 1 12:52:08 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780411.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >2i68_A Protein EMRE; transmem 30.7 30 0.00088 14.0 6.2 29 252-280 79-107 (137)
2 >1bu8_A Protein (pancreatic li 14.7 31 0.00093 13.8 -0.6 15 157-171 5-19 (31)
3 >2jlj_A YSCU, YOP proteins tra 13.5 71 0.0021 11.9 2.1 11 190-200 79-89 (107)
4 >1jb0_B Photosystem I P700 chl 12.7 70 0.0021 11.9 0.7 28 101-128 14-43 (131)
5 >2wjn_L Reaction center protei 12.3 77 0.0023 11.7 4.1 32 21-52 25-56 (114)
6 >1hpl_A Lipase; hydrolase(carb 10.1 44 0.0013 13.0 -1.0 10 157-166 5-14 (30)
7 >3bzs_A ESCU; auto cleavage pr 8.6 1E+02 0.0031 10.9 1.6 12 190-201 117-128 (137)
8 >1rzh_L Reaction center protei 7.2 1.2E+02 0.0036 10.5 3.9 29 21-49 24-52 (114)
9 >2zk9_X Protein-glutaminase; d 6.2 1.4E+02 0.0041 10.2 0.4 19 16-34 102-121 (185)
10 >1m06_J J protein, small core 5.9 41 0.0012 13.2 -2.8 7 87-93 13-19 (26)
No 1
>>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli} (A:)
Probab=30.65 E-value=30 Score=13.98 Aligned_cols=29 Identities=17% Similarity=0.284 Sum_probs=22.1
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 31122489999999999999999998357
Q gi|254780411|r 252 LGGWMTMGMILSILPFLVGVGMVFQSMNS 280 (288)
Q Consensus 252 ~~~~ls~~Q~~sl~~~i~g~~l~~~~~~~ 280 (288)
+...+|..|++++.+++.|+.++-+..++
T Consensus 79 l~E~lt~~~~lG~~lii~Gv~li~~~~~~ 107 (137)
T 2i68_A 79 FGQRLDLPAIIGMMLICAGVLIINLLSRS 107 (137)
T ss_dssp HC------CHHHHHHHHHHHHHHHHC---
T ss_pred HCCCCCHHHHHHHHHHHHHHHHEECCCCC
T ss_conf 37989899999999999999930015788
No 2
>>1bu8_A Protein (pancreatic lipase related protein 2); hydrolase, lipid degradation; HET: NAG; 1.80A {Rattus norvegicus} (A:1-31)
Probab=14.75 E-value=31 Score=13.85 Aligned_cols=15 Identities=27% Similarity=0.676 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHCCC
Q ss_conf 998776556663112
Q gi|254780411|r 157 LGRIANFINGELWGR 171 (288)
Q Consensus 157 iGRiGcf~nge~~G~ 171 (288)
..|+|||-+..=++.
T Consensus 5 Y~~lGCFsd~~PW~g 19 (31)
T 1bu8_A 5 YGHLGCFSNDKPWAG 19 (31)
T ss_dssp CGGGCEEECSTTSSS
T ss_pred CCCCCCCCCCCCCCC
T ss_conf 799897589898667
No 3
>>2jlj_A YSCU, YOP proteins translocation protein U; cell membrane, transmembrane, yersinia pesits, protein transport, type III secretion system, plasmid; 1.3A {Yersinia pestis} PDB: 2jlh_A* 2v5g_A 2w0r_A (A:38-144)
Probab=13.45 E-value=71 Score=11.86 Aligned_cols=11 Identities=36% Similarity=0.471 Sum_probs=9.3
Q ss_pred HHHHHHHHHHH
Q ss_conf 22245899998
Q gi|254780411|r 190 HPSQLYEAITE 200 (288)
Q Consensus 190 hPtqLYEa~~~ 200 (288)
-|.++||++..
T Consensus 79 IP~ely~~VA~ 89 (107)
T 2jlj_A 79 IPAEQIEATAE 89 (107)
T ss_dssp CCGGGHHHHHH
T ss_pred CCHHHHHHHHH
T ss_conf 69999999999
No 4
>>1jb0_B Photosystem I P700 chlorophyll A apoprotein A2; membrane protein, multiprotein-pigment complex, photosynthesis; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} (B:33-163)
Probab=12.69 E-value=70 Score=11.87 Aligned_cols=28 Identities=39% Similarity=0.649 Sum_probs=17.3
Q ss_pred HHHHH--HHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 42114--44322000431002798999999
Q gi|254780411|r 101 FWNSP--LHIFFLWEGGMSFHGGLIGAFVS 128 (288)
Q Consensus 101 y~~~p--~~i~~iw~GGls~~Gg~ig~~~~ 128 (288)
|.+|. +.|+++|-.|+-|||+=.+-.-+
T Consensus 14 FssHfghLaiIflW~sG~~FH~A~~sNye~ 43 (131)
T 1jb0_B 14 FASHFGHLAIIFLWVSGSLFHVAWQGNFEQ 43 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCHHH
T ss_pred HHHHHHHHHHHHHHHHHCEEEEEEECCHHH
T ss_conf 987413789999996013011101023998
No 5
>>2wjn_L Reaction center protein L chain; bacteriochlorophyll, lipidic-sponge phase, photosynthesis, electron transport, cell membrane; HET: HEM FME BCB BPB MPG MQ7 NS5; 1.86A {Rhodopseudomonas viridis} PDB: 2wjm_L* 2i5n_L* 1r2c_L* 1prc_L* 1vrn_L* 2jbl_L* 2prc_L* 3d38_L* 3g7f_L* 3prc_L* 5prc_L* 6prc_L* 7prc_L* 1dxr_L* (L:1-114)
Probab=12.32 E-value=77 Score=11.66 Aligned_cols=32 Identities=19% Similarity=0.529 Sum_probs=23.3
Q ss_pred EEECCCHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 63576225899999999999999999999722
Q gi|254780411|r 21 LSLGPIAIRWYGLAYLVGMLFGIWYIQYLLGK 52 (288)
Q Consensus 21 f~iGp~~I~~YGlm~~lGi~~g~~~~~~~~~r 52 (288)
+++||+-+-+.|+.-++..+++..++....-.
T Consensus 25 aqiGPiYlG~~Gv~s~~~g~l~~~iIg~n~~a 56 (114)
T 2wjn_L 25 FWVGPYFVGFFGVSAIFFIFLGVSLIGYAASQ 56 (114)
T ss_dssp CEETTEECHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 32388666077899999999999999999850
No 6
>>1hpl_A Lipase; hydrolase(carboxylic esterase); 2.30A {Equus caballus} (A:1-30)
Probab=10.10 E-value=44 Score=13.00 Aligned_cols=10 Identities=20% Similarity=0.431 Sum_probs=6.8
Q ss_pred HHHHHHHHHH
Q ss_conf 9987765566
Q gi|254780411|r 157 LGRIANFING 166 (288)
Q Consensus 157 iGRiGcf~ng 166 (288)
..|+|||-+.
T Consensus 5 y~~lGCFsd~ 14 (30)
T 1hpl_A 5 YERLGCFSDD 14 (30)
T ss_dssp ETTTEEEECC
T ss_pred HHHHCCCCCC
T ss_conf 5542715689
No 7
>>3bzs_A ESCU; auto cleavage protein, intein, T3SS, TTSS, asparagine cyclization, membrane, membrane protein, protein transport; 1.48A {Escherichia coli} PDB: 3bzr_A 3bzp_A 3bzt_A 3c03_A (A:)
Probab=8.62 E-value=1e+02 Score=10.89 Aligned_cols=12 Identities=8% Similarity=0.307 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHH
Q ss_conf 222458999986
Q gi|254780411|r 190 HPSQLYEAITEG 201 (288)
Q Consensus 190 hPtqLYEa~~~~ 201 (288)
-|.++||++...
T Consensus 117 IP~ely~aVA~I 128 (137)
T 3bzs_A 117 ITEDFFEPVAQL 128 (137)
T ss_dssp CCGGGHHHHHHH
T ss_pred CCHHHHHHHHHH
T ss_conf 799999999999
No 8
>>1rzh_L Reaction center protein L chain; bacterial photosynthesis, proton transfer pathway, revertant, X-RAY crystallography; HET: BCL BPH BPB U10 SPO LDA HTO CDL; 1.80A {Rhodobacter sphaeroides} (L:1-114)
Probab=7.19 E-value=1.2e+02 Score=10.51 Aligned_cols=29 Identities=24% Similarity=0.516 Sum_probs=19.1
Q ss_pred EEECCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 63576225899999999999999999999
Q gi|254780411|r 21 LSLGPIAIRWYGLAYLVGMLFGIWYIQYL 49 (288)
Q Consensus 21 f~iGp~~I~~YGlm~~lGi~~g~~~~~~~ 49 (288)
.++||+-+-+.|+.-++..+++..++...
T Consensus 24 aqiGP~YlG~~Gv~s~~~g~l~~~iIg~n 52 (114)
T 1rzh_L 24 FWVGPFYVGFFGVATFFFAALGIILIAWS 52 (114)
T ss_dssp CEETTEECHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEHHHHHHHHHHHHHHHHHHHH
T ss_conf 33588787578999999999999999999
No 9
>>2zk9_X Protein-glutaminase; deamidation glutaminase, hydrolase; 1.15A {Chryseobacterium proteolyticum} PDB: 2z8t_X (X:)
Probab=6.15 E-value=1.4e+02 Score=10.19 Aligned_cols=19 Identities=26% Similarity=0.676 Sum_probs=0.0
Q ss_pred CCHHHEEECCCHHH-HHHHH
Q ss_conf 91121635762258-99999
Q gi|254780411|r 16 LNPVALSLGPIAIR-WYGLA 34 (288)
Q Consensus 16 ~~Pvlf~iGp~~I~-~YGlm 34 (288)
+||.+++=+|+++- |...|
T Consensus 102 IDPsL~s~~Pvsv~~Wla~m 121 (185)
T 2zk9_X 102 IDPSLFSSGPVTDTAWRNAC 121 (185)
T ss_dssp ECTTTCSSSCBCHHHHHHHT
T ss_pred ECCCCCCCCCCCHHHHHHHH
T ss_conf 67665789983399999985
No 10
>>1m06_J J protein, small core protein; bacteriophage, virion; HET: 3DR; 3.50A {Enterobacteria phage ALPHA3} (J:)
Probab=5.86 E-value=41 Score=13.20 Aligned_cols=7 Identities=57% Similarity=1.180 Sum_probs=0.0
Q ss_pred HHHHHHH
Q ss_conf 6778999
Q gi|254780411|r 87 GGRIMYV 93 (288)
Q Consensus 87 GARl~yv 93 (288)
|||++||
T Consensus 13 garlwyv 19 (26)
T 1m06_J 13 GARLWYV 19 (26)
T ss_dssp SSCCCCS
T ss_pred CCEEEEE
T ss_conf 7179987
Done!