Query gi|254780411|ref|YP_003064824.1| prolipoprotein diacylglyceryl transferase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 288
No_of_seqs 131 out of 2251
Neff 6.4
Searched_HMMs 13730
Date Wed Jun 1 05:57:12 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780411.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1qk7a_ g.3.6.2 (A:) Lectin SH 5.0 59 0.0043 10.1 -0.4 16 163-178 9-24 (32)
2 d1eexa_ c.1.19.3 (A:) Diol deh 4.6 58 0.0042 10.1 -0.6 43 136-179 171-213 (551)
3 d1pvva1 c.78.1.1 (A:1-150) Orn 4.6 72 0.0052 9.6 -0.2 15 183-200 127-141 (150)
4 d1vlva1 c.78.1.1 (A:1-152) Orn 4.6 75 0.0054 9.5 -0.1 15 183-200 128-142 (152)
5 d1fvia1 b.40.4.6 (A:190-293) A 4.5 50 0.0037 10.5 -1.0 10 185-194 92-101 (104)
6 d1z7da1 c.67.1.4 (A:7-410) Orn 4.5 50 0.0036 10.5 -1.1 35 132-174 215-249 (404)
7 d2nr9a1 f.51.1.1 (A:4-192) Glp 4.4 82 0.0059 9.3 1.8 21 258-281 164-186 (189)
8 d1sffa_ c.67.1.4 (A:) 4-aminob 4.4 45 0.0033 10.8 -1.3 38 129-174 224-261 (425)
9 d1ekxa1 c.78.1.1 (A:1-150) Asp 4.1 89 0.0065 9.1 0.1 12 184-195 128-139 (150)
10 d1js1x1 c.78.1.1 (X:1-163) Tra 3.9 93 0.0068 9.0 -0.1 11 183-193 140-150 (163)
No 1
>d1qk7a_ g.3.6.2 (A:) Lectin SHL-I {Chinese bird spider (Selenocosmia huwena) [TaxId: 29017]}
Probab=4.98 E-value=59 Score=10.07 Aligned_cols=16 Identities=31% Similarity=0.455 Sum_probs=11.3
Q ss_pred HHHHHHCCCCCCCCCC
Q ss_conf 5566631123447433
Q gi|254780411|r 163 FINGELWGRVSWVPWA 178 (288)
Q Consensus 163 f~nge~~G~~t~~pwg 178 (288)
+-||||-|..++.-|.
T Consensus 9 y~~gccsgyvcs~twk 24 (32)
T d1qk7a_ 9 YNNGCCSGYVCSRTWK 24 (32)
T ss_dssp SSCCCCTTEEECSSSC
T ss_pred CCCCCCCCEEECCCEE
T ss_conf 3577304607247553
No 2
>d1eexa_ c.1.19.3 (A:) Diol dehydratase, alpha subunit {Klebsiella oxytoca [TaxId: 571]}
Probab=4.63 E-value=58 Score=10.13 Aligned_cols=43 Identities=14% Similarity=0.103 Sum_probs=33.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 49981241000136778999999877655666311234474333
Q gi|254780411|r 136 YCFSFLLFLDLVAASVPVGIFLGRIANFINGELWGRVSWVPWAM 179 (288)
Q Consensus 136 ~~~~~~~~~D~~ap~~~lg~~iGRiGcf~nge~~G~~t~~pwgv 179 (288)
....+.+++-.-|.++++|--.||-|-. .||.....|++-.|+
T Consensus 171 TTv~v~ryAp~nAialliGsqvGrpGvl-tQCs~EEA~EL~lGm 213 (551)
T d1eexa_ 171 TTVAVARYAPFNAIALLVGSQVGRPGVL-TQCSLEEATELKLGM 213 (551)
T ss_dssp ECCSSGGGHHHHHHHHHHHHHHHCTTCE-EEECCCHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHCCCCCCCCEE-EEECHHHHHHHHHHH
T ss_conf 1124442261678999861556898233-210022577777544
No 3
>d1pvva1 c.78.1.1 (A:1-150) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=4.61 E-value=72 Score=9.61 Aligned_cols=15 Identities=33% Similarity=0.443 Sum_probs=10.0
Q ss_pred CCHHHHHHHHHHHHHHHH
Q ss_conf 200112322245899998
Q gi|254780411|r 183 DGGSLPRHPSQLYEAITE 200 (288)
Q Consensus 183 ~~~~~p~hPtqLYEa~~~ 200 (288)
|+++...||||- +.+
T Consensus 127 Ng~~~~~HPtQa---L~D 141 (150)
T d1pvva1 127 NGLSDFSHPCQA---LAD 141 (150)
T ss_dssp EEECSSCCHHHH---HHH
T ss_pred ECCCCCCCCHHH---HHH
T ss_conf 499999871799---999
No 4
>d1vlva1 c.78.1.1 (A:1-152) Ornithine transcarbamoylase {Thermotoga maritima [TaxId: 2336]}
Probab=4.60 E-value=75 Score=9.51 Aligned_cols=15 Identities=27% Similarity=0.465 Sum_probs=10.0
Q ss_pred CCHHHHHHHHHHHHHHHH
Q ss_conf 200112322245899998
Q gi|254780411|r 183 DGGSLPRHPSQLYEAITE 200 (288)
Q Consensus 183 ~~~~~p~hPtqLYEa~~~ 200 (288)
|+++--.||||- +.+
T Consensus 128 Ng~~~~~HPtQ~---L~D 142 (152)
T d1vlva1 128 NGLTDEFHPTQA---LAD 142 (152)
T ss_dssp ESCCSSCCHHHH---HHH
T ss_pred ECCCCCCCCHHH---HHH
T ss_conf 389988870399---999
No 5
>d1fvia1 b.40.4.6 (A:190-293) ATP-dependent DNA ligase {Chlorella virus PBCV-1 [TaxId: 10506]}
Probab=4.50 E-value=50 Score=10.48 Aligned_cols=10 Identities=30% Similarity=0.564 Sum_probs=6.4
Q ss_pred HHHHHHHHHH
Q ss_conf 0112322245
Q gi|254780411|r 185 GSLPRHPSQL 194 (288)
Q Consensus 185 ~~~p~hPtqL 194 (288)
++.||||+++
T Consensus 92 ~g~PRfP~f~ 101 (104)
T d1fvia1 92 KDCPRFPVFI 101 (104)
T ss_dssp ---CEEEEEE
T ss_pred CCCCCCCEEE
T ss_conf 9971475578
No 6
>d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]}
Probab=4.45 E-value=50 Score=10.50 Aligned_cols=35 Identities=20% Similarity=0.267 Sum_probs=24.9
Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 8875499812410001367789999998776556663112344
Q gi|254780411|r 132 LSRIYCFSFLLFLDLVAASVPVGIFLGRIANFINGELWGRVSW 174 (288)
Q Consensus 132 ~~~~~~~~~~~~~D~~ap~~~lg~~iGRiGcf~nge~~G~~t~ 174 (288)
.|+++ +.+-.+|=... ++||.|+++..|.+|..-|
T Consensus 215 lc~~~--g~llI~DEV~t------GfgRtG~~~~~e~~gv~PD 249 (404)
T d1z7da1 215 ICKKY--NVLFVADEVQT------GLGRTGKLLCVHHYNVKPD 249 (404)
T ss_dssp HHHHT--TCEEEEECTTT------TTTTTSSSSGGGGGTCCCS
T ss_pred HHHHC--CCEEEEECCCC------CCCCCCCCCCCCCCCCCCC
T ss_conf 99881--97899976754------7774434345000598877
No 7
>d2nr9a1 f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilus influenzae [TaxId: 727]}
Probab=4.44 E-value=82 Score=9.29 Aligned_cols=21 Identities=14% Similarity=0.249 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHH--HHHHHCCC
Q ss_conf 8999999999999999--99983578
Q gi|254780411|r 258 MGMILSILPFLVGVGM--VFQSMNSK 281 (288)
Q Consensus 258 ~~Q~~sl~~~i~g~~l--~~~~~~~~ 281 (288)
.+++.+. +.|+.+ +.++++||
T Consensus 164 ~aHl~G~---l~G~~~g~~~~~~~k~ 186 (189)
T d2nr9a1 164 AAHISGL---IVGLIWGFIDSKLRKN 186 (189)
T ss_dssp HHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHH---HHHHHHHHHHHCCCCC
T ss_conf 9999999---9999999999721665
No 8
>d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]}
Probab=4.44 E-value=45 Score=10.76 Aligned_cols=38 Identities=24% Similarity=0.140 Sum_probs=26.1
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 9888875499812410001367789999998776556663112344
Q gi|254780411|r 129 LFLLSRIYCFSFLLFLDLVAASVPVGIFLGRIANFINGELWGRVSW 174 (288)
Q Consensus 129 ~~~~~~~~~~~~~~~~D~~ap~~~lg~~iGRiGcf~nge~~G~~t~ 174 (288)
+-=.|++++. +-.+|=... ++||.|+++..+.||..-|
T Consensus 224 l~~lc~~~gi--llI~DEV~t------G~gR~g~~~a~~~~gv~PD 261 (425)
T d1sffa_ 224 LRALCDEHGI--MLIADEVQS------GAGRTGTLFAMEQMGVAPD 261 (425)
T ss_dssp HHHHHHHHTC--EEEEECTTT------TTTTTSSSSGGGGTTSCCS
T ss_pred HHHHHHHCCC--EEEECCCCC------CCCCCCHHHHHHHCCCCCC
T ss_conf 9999997392--698623332------6777630457886598944
No 9
>d1ekxa1 c.78.1.1 (A:1-150) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]}
Probab=4.14 E-value=89 Score=9.07 Aligned_cols=12 Identities=33% Similarity=0.614 Sum_probs=7.9
Q ss_pred CHHHHHHHHHHH
Q ss_conf 001123222458
Q gi|254780411|r 184 GGSLPRHPSQLY 195 (288)
Q Consensus 184 ~~~~p~hPtqLY 195 (288)
+++--.||||.-
T Consensus 128 g~~~~~HPtQaL 139 (150)
T d1ekxa1 128 GDGSNQHPTQTL 139 (150)
T ss_dssp EETTSCCHHHHH
T ss_pred CCCCCCCHHHHH
T ss_conf 889887618999
No 10
>d1js1x1 c.78.1.1 (X:1-163) Transcarbamylase-like protein {Bacteroides fragilis [TaxId: 817]}
Probab=3.88 E-value=93 Score=8.97 Aligned_cols=11 Identities=36% Similarity=0.459 Sum_probs=0.0
Q ss_pred CCHHHHHHHHH
Q ss_conf 20011232224
Q gi|254780411|r 183 DGGSLPRHPSQ 193 (288)
Q Consensus 183 ~~~~~p~hPtq 193 (288)
|+++--.||||
T Consensus 140 Ng~~~~~HPtQ 150 (163)
T d1js1x1 140 SMEAATRHPLQ 150 (163)
T ss_dssp ESSCSSCCHHH
T ss_pred CCCCCCCCHHH
T ss_conf 48999876489
Done!