RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780411|ref|YP_003064824.1| prolipoprotein diacylglyceryl
transferase [Candidatus Liberibacter asiaticus str. psy62]
(288 letters)
>gnl|CDD|110765 pfam01790, LGT, Prolipoprotein diacylglyceryl transferase.
Length = 257
Score = 237 bits (608), Expect = 2e-63
Identities = 116/272 (42%), Positives = 164/272 (60%), Gaps = 27/272 (9%)
Query: 15 NLNPVALSLGPIAIRWYGLAYLVGMLFGIWYIQYLLGKPALWTEKQNNENLVYKEGDCQE 74
+++PVA S+GP+AIRWYGL Y +G+L W + K + N++ + +
Sbjct: 1 SIDPVAFSIGPLAIRWYGLMYAIGILLAYWLARKRAKKRGI------NKDQL-------D 47
Query: 75 SCFFWLAISVIVGGRIMYVLFYNWQVFWNSPLHIFFLWEGGMSFHGGLIGAFVSLFLLSR 134
W + I+G R+ YVLFY+W + +PL IF +WEGGM+ HGGLIG ++ L SR
Sbjct: 48 DLLLWAVLGGIIGARLGYVLFYDWSYYLQNPLEIFKIWEGGMAIHGGLIGGILAALLFSR 107
Query: 135 IYCFSFLLFLDLVAASVPVGIFLGRIANFINGELWGRVSWVPWAMVFP---------DGG 185
SFL DL+A +VP+G +GR NFINGEL+GR + +PWA++FP G
Sbjct: 108 KKKLSFLKLADLIAPAVPLGQAIGRWGNFINGELYGRPTDLPWAIIFPLPNFIINQMYIG 167
Query: 186 SLPRHPSQLYEAITEGLMIFLIMQLMVYRGSFKSPGLTAGAFAICYSVVRFFMEFFREPD 245
LPRHP+QLYE+I EG++ F+I+ L + K PG G + I Y + RFF+EFFREPD
Sbjct: 168 GLPRHPTQLYESILEGIVFFIILWLRRRKKKLK-PGFVFGLYLIGYGLGRFFIEFFREPD 226
Query: 246 YQLGYLLGGWMTMGMILSILPFLVGVGMVFQS 277
Q LGG + MG ILSI L+G+ ++ +
Sbjct: 227 LQ----LGGGLRMGQILSIPMILLGIILIIFA 254
>gnl|CDD|31026 COG0682, Lgt, Prolipoprotein diacylglyceryltransferase [Cell
envelope biogenesis, outer membrane].
Length = 287
Score = 207 bits (529), Expect = 2e-54
Identities = 120/286 (41%), Positives = 160/286 (55%), Gaps = 31/286 (10%)
Query: 6 MLWSILTYPNLNPVALSLGPIAIRWYGLAYLVGMLFGIWYIQYLLGKPALWTEKQNNENL 65
M S L +P ++PVA S+GP+AIRWYGL Y++G+L W + KP T+
Sbjct: 1 MPLSYLIFPPIDPVAFSIGPLAIRWYGLMYVLGILLAYWLARKRARKPGGITDDD----- 55
Query: 66 VYKEGDCQESCFFWLAISVIVGGRIMYVLFYNWQVFWN-SPLHIFFLWEGGMSFHGGLIG 124
E W + I+G R+ YVLFY + N +PL IF +WEGGMS HGGLIG
Sbjct: 56 -------FEDFILWAVLGGIIGARLGYVLFYWPSYYQNANPLDIFKIWEGGMSIHGGLIG 108
Query: 125 AFVSLFLLSR--IYCFSFLLFLDLVAASVPVGIFLGRIANFINGELWGRVSWVP-----W 177
++ + SR SFL LDL+A SVP+G +GR NFIN EL+GR + P W
Sbjct: 109 GILAALIFSRKKRKKISFLQLLDLIAPSVPLGQAIGRWGNFINQELYGRPTTGPWNLPHW 168
Query: 178 AMVFPDG--------GSLPRHPSQLYEAITEGLMIFLIMQLMVYRGSFKSPGLTAGAFAI 229
M FP+ G+LPRHPSQLYE+ EG++ F+I+ L + G G + I
Sbjct: 169 PMFFPNPMYIDGAYTGALPRHPSQLYESFLEGIVFFIILFLFRRKPL-LKSGFVFGLYLI 227
Query: 230 CYSVVRFFMEFFREPDYQLGYLLGGWMTMGMILSILPFLVGVGMVF 275
Y + RFF+EFFREPD LG L+ MG ILSI L+G+ ++
Sbjct: 228 GYGLFRFFIEFFREPDLMLGGLIRIL--MGQILSIPMILLGLWLII 271
>gnl|CDD|36680 KOG1467, KOG1467, KOG1467, Translation initiation factor 2B, delta
subunit (eIF-2Bdelta/GCD2) [Translation, ribosomal
structure and biogenesis].
Length = 556
Score = 30.4 bits (68), Expect = 0.60
Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Query: 180 VFPDGGSLPRHPSQLYEAITEGLMIFLIMQLMVYRGSFKSPGLTAGAFAICYSVVRFFME 239
V SL H Q A T+ + + I ++ G + G +G+ A C ++++ F E
Sbjct: 206 VASQKVSLFTHLPQYDRATTQFIFLDSIHPAVLRLGLQYALGKISGSNARCIAMLQAFQE 265
Query: 240 FFREPDYQ 247
+ DY
Sbjct: 266 VIK--DYT 271
>gnl|CDD|35038 COG5479, COG5479, Uncharacterized protein potentially involved in
peptidoglycan biosynthesis [Cell envelope biogenesis,
outer membrane].
Length = 556
Score = 29.6 bits (66), Expect = 0.98
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 169 WGRVSWVPWAMVFPDGGSLPRHPSQLYEAITEG 201
WGR W + +P GG +P SQ++ T G
Sbjct: 207 WGRAGWEAGPLGYPTGGEVPLGGSQIFVGHTTG 239
>gnl|CDD|35697 KOG0476, KOG0476, KOG0476, Cl- channel CLC-2 and related proteins
(CLC superfamily) [Inorganic ion transport and
metabolism].
Length = 931
Score = 29.2 bits (65), Expect = 1.5
Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 10/82 (12%)
Query: 103 NSPLHIFFLWEGGMSFHGGLIGAFVSLFLLSRIYCFSFLLFLDLVAASVPVGIFLGRIAN 162
P HI W G + F +L L + F + + VP G+F +
Sbjct: 423 LCPAHILTHWYHP----EGDVSIFGTLVLF---FLMYFWMSIIATTIPVPSGVF---MPV 472
Query: 163 FINGELWGRVSWVPWAMVFPDG 184
F+ G +GR+ A++FP+G
Sbjct: 473 FVIGAAFGRLVGEIMAVLFPEG 494
>gnl|CDD|31812 COG1625, COG1625, Fe-S oxidoreductase, related to NifB/MoaA family
[Energy production and conversion].
Length = 414
Score = 28.7 bits (64), Expect = 2.1
Identities = 9/63 (14%), Positives = 18/63 (28%), Gaps = 5/63 (7%)
Query: 208 MQLMVYRGSFKSPGLTAGAFAICY----SVVRFFMEFFREPDYQLGYLLGGWMTM-GMIL 262
L + CY R ++++ D +L + G T+
Sbjct: 70 EDLGLEFEEVLGAKQCGNGDTFCYPDLEPRGRRARLYYKDDDIRLSFTSGSGFTLTNRAE 129
Query: 263 SIL 265
I+
Sbjct: 130 RII 132
>gnl|CDD|34930 COG5360, COG5360, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 566
Score = 27.3 bits (60), Expect = 5.5
Identities = 20/81 (24%), Positives = 28/81 (34%), Gaps = 8/81 (9%)
Query: 178 AMVFPDGGSLPRHPSQLYEAITEGLMIFLIMQLMVYRGSFKSPGLTAGAFAICYSVVRFF 237
+ PDGG + R+P A E L+ L ++ P A +R
Sbjct: 226 RQILPDGGHISRNP----RAGLELLLDLLPLRQTYANLGHDPPSALIPAIDRMLPALR-- 279
Query: 238 MEFFREPDYQLGYLLGGWMTM 258
FFR D L G T+
Sbjct: 280 --FFRHQDGSLALFNGATATL 298
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.330 0.146 0.491
Gapped
Lambda K H
0.267 0.0797 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 3,996,963
Number of extensions: 235144
Number of successful extensions: 1024
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1002
Number of HSP's successfully gapped: 106
Length of query: 288
Length of database: 6,263,737
Length adjustment: 93
Effective length of query: 195
Effective length of database: 4,254,100
Effective search space: 829549500
Effective search space used: 829549500
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 57 (25.6 bits)