RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780411|ref|YP_003064824.1| prolipoprotein diacylglyceryl transferase [Candidatus Liberibacter asiaticus str. psy62] (288 letters) >2fym_A Enolase; RNA degradosome, enolase, lyase; 1.60A {Escherichia coli} SCOP: c.1.11.1 d.54.1.1 PDB: 1e9i_A Length = 431 Score = 29.2 bits (65), Expect = 1.3 Identities = 20/96 (20%), Positives = 35/96 (36%), Gaps = 2/96 (2%) Query: 188 PRHPSQLYEAITEGLMIFL-IMQLMVYRGSFKSPGLTAGAFAICYSVVRFFMEFFREPDY 246 P + EAI G +F + +++ +G + G G +A + E Sbjct: 172 PVGAKTVKEAIRMGSEVFHHLAKVLKAKGMNTAVG-DEGGYAPNLGSNAEALAVIAEAVK 230 Query: 247 QLGYLLGGWMTMGMILSILPFLVGVGMVFQSMNSKS 282 GY LG +T+ M + F V +K+ Sbjct: 231 AAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKA 266 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 26.4 bits (58), Expect = 7.7 Identities = 21/120 (17%), Positives = 31/120 (25%), Gaps = 42/120 (35%) Query: 184 GGSLPR-HPSQLYEAITEG---LM-IF------------LIMQLMVYRGSFKSPGLTAGA 226 + S L+ A+ EG L+ IF L Y Sbjct: 134 KRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYH-VLVGD------ 186 Query: 227 FAICYSVVRFFMEFFREPD-----YQLGYLLGGWMT-------MGMILSI---LPFLVGV 271 + E R + G + W+ +LSI P L+GV Sbjct: 187 --LIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCP-LIGV 243 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.330 0.146 0.491 Gapped Lambda K H 0.267 0.0686 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 2,672,126 Number of extensions: 124015 Number of successful extensions: 492 Number of sequences better than 10.0: 1 Number of HSP's gapped: 491 Number of HSP's successfully gapped: 37 Length of query: 288 Length of database: 5,693,230 Length adjustment: 91 Effective length of query: 197 Effective length of database: 3,487,026 Effective search space: 686944122 Effective search space used: 686944122 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 56 (25.4 bits)