RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780411|ref|YP_003064824.1| prolipoprotein diacylglyceryl
transferase [Candidatus Liberibacter asiaticus str. psy62]
         (288 letters)



>2fym_A Enolase; RNA degradosome, enolase, lyase; 1.60A {Escherichia coli}
           SCOP: c.1.11.1 d.54.1.1 PDB: 1e9i_A
          Length = 431

 Score = 29.2 bits (65), Expect = 1.3
 Identities = 20/96 (20%), Positives = 35/96 (36%), Gaps = 2/96 (2%)

Query: 188 PRHPSQLYEAITEGLMIFL-IMQLMVYRGSFKSPGLTAGAFAICYSVVRFFMEFFREPDY 246
           P     + EAI  G  +F  + +++  +G   + G   G +A         +    E   
Sbjct: 172 PVGAKTVKEAIRMGSEVFHHLAKVLKAKGMNTAVG-DEGGYAPNLGSNAEALAVIAEAVK 230

Query: 247 QLGYLLGGWMTMGMILSILPFLVGVGMVFQSMNSKS 282
             GY LG  +T+ M  +   F      V     +K+
Sbjct: 231 AAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKA 266


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 26.4 bits (58), Expect = 7.7
 Identities = 21/120 (17%), Positives = 31/120 (25%), Gaps = 42/120 (35%)

Query: 184 GGSLPR-HPSQLYEAITEG---LM-IF------------LIMQLMVYRGSFKSPGLTAGA 226
                +   S L+ A+ EG   L+ IF            L      Y             
Sbjct: 134 KRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYH-VLVGD------ 186

Query: 227 FAICYSVVRFFMEFFREPD-----YQLGYLLGGWMT-------MGMILSI---LPFLVGV 271
             +         E  R        +  G  +  W+           +LSI    P L+GV
Sbjct: 187 --LIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCP-LIGV 243


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.330    0.146    0.491 

Gapped
Lambda     K      H
   0.267   0.0686    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 2,672,126
Number of extensions: 124015
Number of successful extensions: 492
Number of sequences better than 10.0: 1
Number of HSP's gapped: 491
Number of HSP's successfully gapped: 37
Length of query: 288
Length of database: 5,693,230
Length adjustment: 91
Effective length of query: 197
Effective length of database: 3,487,026
Effective search space: 686944122
Effective search space used: 686944122
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 56 (25.4 bits)