RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780412|ref|YP_003064825.1| hypothetical protein
CLIBASIA_01485 [Candidatus Liberibacter asiaticus str. psy62]
(94 letters)
>gnl|CDD|32780 COG2960, COG2960, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 103
Score = 35.4 bits (81), Expect = 0.004
Identities = 23/83 (27%), Positives = 46/83 (55%)
Query: 1 MSFRSNQFFQQASRLASCASDAFKDISKEAESFAQIKIQRTLNSMGVVRAEEIENVKRTT 60
N+F A++L+ A+ A +++ E E + ++QR LN + +V EE + ++
Sbjct: 9 TMIGPNRFEDIAAQLSEDAAGAAQEVRAEVEKAFRAQLQRQLNKLDLVSREEFDVQRQVL 68
Query: 61 SHLREEITAIGKRLEKIEQQLAD 83
RE++ A+ R+E++E +LA
Sbjct: 69 LRTREKLAALEARIEELEARLAS 91
>gnl|CDD|146821 pfam04380, DUF526, Protein of unknown function (DUF526).
Length = 70
Score = 30.9 bits (71), Expect = 0.072
Identities = 15/69 (21%), Positives = 35/69 (50%)
Query: 11 QASRLASCASDAFKDISKEAESFAQIKIQRTLNSMGVVRAEEIENVKRTTSHLREEITAI 70
++L + A + + +EAE+ + +Q L+ + +V EE + + + RE++ A+
Sbjct: 2 DLAKLITDALGGAQGLREEAETNVRAVLQSALSKLDLVTREEFDVQRAVLARTREKLEAL 61
Query: 71 GKRLEKIEQ 79
R+ +E
Sbjct: 62 EARVAALEA 70
>gnl|CDD|33325 COG3522, COG3522, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 446
Score = 27.1 bits (60), Expect = 0.94
Identities = 9/56 (16%), Positives = 18/56 (32%)
Query: 1 MSFRSNQFFQQASRLASCASDAFKDISKEAESFAQIKIQRTLNSMGVVRAEEIENV 56
M R F QQ L + + F+++ + + + G + V
Sbjct: 13 MFLRPQHFQQQDRYLEYLLHRRAQALQPYFWGFSELTLDQEALAQGKLAITSASGV 68
>gnl|CDD|37602 KOG2391, KOG2391, KOG2391, Vacuolar sorting protein/ubiquitin
receptor VPS23 [Posttranslational modification, protein
turnover, chaperones, Intracellular trafficking,
secretion, and vesicular transport].
Length = 365
Score = 27.3 bits (60), Expect = 1.1
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 52 EIENVKRTTSHLREEITAIGKRLEKIEQQLADLE 85
E E++KRT L + E +EQQL L+
Sbjct: 233 EQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQ 266
>gnl|CDD|37230 KOG2019, KOG2019, KOG2019, Metalloendoprotease HMP1 (insulinase
superfamily) [General function prediction only,
Posttranslational modification, protein turnover,
chaperones].
Length = 998
Score = 26.1 bits (57), Expect = 2.5
Identities = 14/66 (21%), Positives = 26/66 (39%), Gaps = 7/66 (10%)
Query: 25 DISKEAESFAQIKIQRTLNSM------GVVRA-EEIENVKRTTSHLREEITAIGKRLEKI 77
IS++ +Q++ L +V EI T+ + ITA K+L +
Sbjct: 721 WISEQLGGLSQLEFLHRLEEKVDNDWEPIVSKLTEIRKSLLNTNGMIVNITADPKQLTNV 780
Query: 78 EQQLAD 83
E+ +
Sbjct: 781 EKAVEK 786
>gnl|CDD|144852 pfam01411, tRNA-synt_2c, tRNA synthetases class II (A). Other
tRNA synthetase sub-families are too dissimilar to be
included. This family includes only alanyl-tRNA
synthetases.
Length = 545
Score = 25.7 bits (57), Expect = 2.7
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Query: 23 FKDISKEAESFAQIKIQRTLNSMGVVRAEEIENVKRTTSHL 63
FK I E R +NS +RA +++NV RT H
Sbjct: 41 FKPIFLGGEDKPPYN--RAVNSQKCIRAGDLDNVGRTARHH 79
>gnl|CDD|133279 cd01878, HflX, HflX subfamily. A distinct conserved domain with
a glycine-rich segment N-terminal of the GTPase domain
characterizes the HflX subfamily. The E. coli HflX has
been implicated in the control of the lambda cII
repressor proteolysis, but the actual biological
functions of these GTPases remain unclear. HflX is
widespread, but not universally represented in all
three superkingdoms.
Length = 204
Score = 25.1 bits (56), Expect = 5.0
Identities = 7/19 (36%), Positives = 13/19 (68%)
Query: 62 HLREEITAIGKRLEKIEQQ 80
+RE I + + LEK+++Q
Sbjct: 10 LIRERIAKLRRELEKVKKQ 28
>gnl|CDD|30363 COG0013, AlaS, Alanyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 879
Score = 24.8 bits (54), Expect = 5.3
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 40 RTLNSMGVVRAEEIENVKRTTSHL 63
R + S +R +I+NV T H
Sbjct: 64 RAVTSQKCIRTNDIDNVGYTARHH 87
>gnl|CDD|29811 cd00673, AlaRS_core, Alanyl-tRNA synthetase (AlaRS) class II core
catalytic domain. AlaRS is a homodimer. It is
responsible for the attachment of alanine to the 3' OH
group of ribose of the appropriate tRNA. This domain is
primarily responsible for ATP-dependent formation of
the enzyme bound aminoacyl-adenylate. Class II
assignment is based upon its predicted structure and
the presence of three characteristic sequence motifs..
Length = 232
Score = 24.9 bits (54), Expect = 5.5
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 40 RTLNSMGVVRAEEIENVKRTTSHL 63
R +NS +RA +I+NV +T H
Sbjct: 57 RLVNSQKCIRAGDIDNVGKTGRHH 80
>gnl|CDD|133403 cd04776, HTH_GnyR, Helix-Turn-Helix DNA binding domain of the
regulatory protein GnyR. Putative helix-turn-helix
(HTH) regulatory protein, GnyR, and other related
proteins. GnyR belongs to the gnyRDBHAL cluster, which
is involved in acyclic isoprenoid degradation in
Pseudomonas aeruginosa. These proteins share the
N-terminal DNA binding domain with other transcription
regulators of the MerR superfamily that promote
transcription by reconfiguring the spacer between the
-35 and -10 promoter elements. A typical MerR regulator
is comprised of distinct domains that harbor the
regulatory (effector-binding) site and the active
(DNA-binding) site. Their conserved N-terminal domains
contain predicted winged HTH motifs that mediate DNA
binding, while the dissimilar C-terminal domains bind
specific coactivator molecules.
Length = 118
Score = 24.4 bits (54), Expect = 6.6
Identities = 8/33 (24%), Positives = 15/33 (45%)
Query: 57 KRTTSHLREEITAIGKRLEKIEQQLADLELFIN 89
L + + I KR ++EQQ D++ +
Sbjct: 72 GGNRKQLEKMLEKIEKRRAELEQQRRDIDAALA 104
>gnl|CDD|35461 KOG0240, KOG0240, KOG0240, Kinesin (SMY1 subfamily) [Cytoskeleton].
Length = 607
Score = 24.6 bits (53), Expect = 7.0
Identities = 13/50 (26%), Positives = 26/50 (52%)
Query: 45 MGVVRAEEIENVKRTTSHLREEITAIGKRLEKIEQQLADLELFINQKEKE 94
M + +EE ++ + L EE + +R+E + QQL + IN++ +
Sbjct: 394 MSAILSEEEMSITKLKGSLEEEEDILTERIESLYQQLDQKDDQINKQSQL 443
>gnl|CDD|112592 pfam03786, UxuA, D-mannonate dehydratase (UxuA). UxuA (this
family) and UxuB are required for hexuronate
degradation.
Length = 350
Score = 24.3 bits (53), Expect = 8.6
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 49 RAEEIENVKRTTSHL 63
R IEN K+T +L
Sbjct: 80 RDRYIENYKQTIRNL 94
>gnl|CDD|35832 KOG0612, KOG0612, KOG0612, Rho-associated, coiled-coil containing
protein kinase [Signal transduction mechanisms].
Length = 1317
Score = 24.2 bits (52), Expect = 8.8
Identities = 15/44 (34%), Positives = 22/44 (50%)
Query: 51 EEIENVKRTTSHLREEITAIGKRLEKIEQQLADLELFINQKEKE 94
E I +K S L E + A K L K+E+ + + I+ EKE
Sbjct: 623 EIIAELKEEISSLEETLKAGKKELLKVEELKRENQERISDSEKE 666
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.315 0.126 0.320
Gapped
Lambda K H
0.267 0.0573 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 972,532
Number of extensions: 41112
Number of successful extensions: 312
Number of sequences better than 10.0: 1
Number of HSP's gapped: 308
Number of HSP's successfully gapped: 91
Length of query: 94
Length of database: 6,263,737
Length adjustment: 62
Effective length of query: 32
Effective length of database: 4,923,979
Effective search space: 157567328
Effective search space used: 157567328
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.8 bits)