HHsearch alignment for GI: 254780413 and conserved domain: COG0643
>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms].
Probab=99.73 E-value=3.9e-15 Score=128.76 Aligned_cols=169 Identities=21% Similarity=0.341 Sum_probs=125.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHHHHH--CCEEEEEEECCCCCEEEECHHHHH
Q ss_conf 999998999999999999986643188520003317999999999999999873--780899973798846898889999
Q gi|254780413|r 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE--KRILIRTSFANNIPRILADLRSVK 705 (820)
Q Consensus 628 ~~i~~~~~~l~~li~dlLd~srieaG~~~l~~~~vdl~~lv~~~~~~~~~~a~~--~~i~l~~~~~~~lp~v~~D~~~l~ 705 (820)
T Consensus 364 ~el~~~~~~l~~~~~~LQd~vm--------~~RMvP~~~vf~RfpR~VRdla~~lgK~V~L~ieG~----~telDksIlE 431 (716)
T COG0643 364 EELDEALRQLSRLTTDLQDEVM--------KIRMVPFEQVFSRFPRMVRDLARKLGKQVELVIEGE----DTELDKSILE 431 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--------HHHCEEHHHHHHHCCHHHHHHHHHHCCEEEEEEECC----CEEEHHHHHH
T ss_conf 9999999999999999999999--------970003999874440999999998699169999648----7134298998
Q ss_pred HH---HHHHHHHHHHCC------------CCCCEEEEEEEECCCCEEEEEEEECCCCCCHHH------------------
Q ss_conf 99---999998888718------------897879999998049949999997889789888------------------
Q gi|254780413|r 706 QI---ALNILSNAIHFT------------PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYE------------------ 752 (820)
Q Consensus 706 Qv---l~NLl~NAik~t------------~~gg~v~v~~~~~~~~~v~i~V~DtG~GI~~~~------------------ 752 (820)
T Consensus 432 ~l~dPL~HLvRNAvDHGIE~pE~R~a~GKp~~G~I~L~A~-~~gn~ivIev~DDG~Gid~ekI~~KAiErGli~~~~a~~ 510 (716)
T COG0643 432 RLGDPLTHLVRNAVDHGIETPEERRAAGKPEEGTITLSAY-HEGNNIVIEVSDDGAGIDREKIREKAIERGLITEEEAET 510 (716)
T ss_pred HHCCCHHHHHHCCHHCCCCCHHHHHHCCCCCCCEEEEEEE-CCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCHHHHCC
T ss_conf 8646699888500110589889998759898636999998-379869999956899879999999999829988677520
Q ss_pred ------HHHHCCC-CEEECCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEECCC
Q ss_conf ------6642377-1873478766678886068999999996198699997889953999996357
Q gi|254780413|r 753 ------LEKAMKP-FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811 (820)
Q Consensus 753 ------~~~iFep-F~~~~~~~~~~~~GtGLGLai~k~iVe~hgG~i~v~S~pG~Gt~f~v~lP~~ 811 (820)
T Consensus 511 lSd~Ei~~LIF~PGFSTa~~-Vtd-vSGRGVGMDVVk~~I~~LgG~I~V~S~~G~GT~Fti~LPLT 574 (716)
T COG0643 511 LSDEEILNLIFAPGFSTAEQ-VTD-VSGRGVGMDVVKTNIEQLGGSISVSSEPGKGTTFTIRLPLT 574 (716)
T ss_pred CCHHHHHHHHHCCCCCCCHH-HHC-CCCCCCCHHHHHHHHHHCCCEEEEEECCCCCEEEEEECCCH
T ss_conf 79999998873699873411-101-65776578999999997399899996278976999966879