HHsearch alignment for GI: 254780413 and conserved domain: COG2172

>COG2172 RsbW Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms].
Probab=97.98  E-value=0.00014  Score=51.55  Aligned_cols=99  Identities=24%  Similarity=0.358  Sum_probs=70.1

Q ss_pred             CHHHHHHHHHHHHHHHHHCCCC----CCEEEEEEEECCCCEEEEEEEECCCCCCHHHHHHHCCCCEEECCCCCCCCCCCC
Q ss_conf             8899999999999888871889----787999999804994999999788978988866423771873478766678886
Q gi|254780413|r  700 DLRSVKQIALNILSNAIHFTPS----GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG  775 (820)
Q Consensus       700 D~~~l~Qvl~NLl~NAik~t~~----gg~v~v~~~~~~~~~v~i~V~DtG~GI~~~~~~~iFepF~~~~~~~~~~~~GtG  775 (820)
T Consensus        37 ~~~~l~~av~E~~~N~v~Ha~~~~~~~g~I~i~~~~~~-~~~~i~i~D~G~~~~--~~~~~~~~~~~~~~~--~--~~~G  109 (146)
T COG2172          37 DIADLAIAVSEALTNAVKHAYKLDPSEGEIRIEVSLDD-GKLEIRIWDQGPGIE--DLEESLGPGDTTAEG--L--QEGG  109 (146)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECC-CEEEEEEEECCCCCC--CHHHHCCCCCCCCCC--C--CCCC
T ss_conf             99999999999998999976303899865999999709-939999995798987--888853888888875--3--2473


Q ss_pred             CHHHHHHHHHHHCCCEEEEEEECCC---CEEEEEEEC
Q ss_conf             0689999999961986999978899---539999963
Q gi|254780413|r  776 LGLPLAKAMVDANMGKFYIFSTPAK---GTLIEIIFP  809 (820)
Q Consensus       776 LGLai~k~iVe~hgG~i~v~S~pG~---Gt~f~v~lP  809 (820)
T Consensus       110 ~Gl~l~~~~~----D~~~~~~~~~~~~~~~~~~~~~~  142 (146)
T COG2172         110 LGLFLAKRLM----DEFSYERSEDGRNRLTKITLRKR  142 (146)
T ss_pred             CCHHHHHHHH----EEEEEEEECCCCEEEEEEEECCC
T ss_conf             1378886211----07999960698558999996243