HHsearch alignment for GI: 254780413 and conserved domain: COG2172
>COG2172 RsbW Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms].
Probab=97.98 E-value=0.00014 Score=51.55 Aligned_cols=99 Identities=24% Similarity=0.358 Sum_probs=70.1
Q ss_pred CHHHHHHHHHHHHHHHHHCCCC----CCEEEEEEEECCCCEEEEEEEECCCCCCHHHHHHHCCCCEEECCCCCCCCCCCC
Q ss_conf 8899999999999888871889----787999999804994999999788978988866423771873478766678886
Q gi|254780413|r 700 DLRSVKQIALNILSNAIHFTPS----GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775 (820)
Q Consensus 700 D~~~l~Qvl~NLl~NAik~t~~----gg~v~v~~~~~~~~~v~i~V~DtG~GI~~~~~~~iFepF~~~~~~~~~~~~GtG 775 (820)
T Consensus 37 ~~~~l~~av~E~~~N~v~Ha~~~~~~~g~I~i~~~~~~-~~~~i~i~D~G~~~~--~~~~~~~~~~~~~~~--~--~~~G 109 (146)
T COG2172 37 DIADLAIAVSEALTNAVKHAYKLDPSEGEIRIEVSLDD-GKLEIRIWDQGPGIE--DLEESLGPGDTTAEG--L--QEGG 109 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECC-CEEEEEEEECCCCCC--CHHHHCCCCCCCCCC--C--CCCC
T ss_conf 99999999999998999976303899865999999709-939999995798987--888853888888875--3--2473
Q ss_pred CHHHHHHHHHHHCCCEEEEEEECCC---CEEEEEEEC
Q ss_conf 0689999999961986999978899---539999963
Q gi|254780413|r 776 LGLPLAKAMVDANMGKFYIFSTPAK---GTLIEIIFP 809 (820)
Q Consensus 776 LGLai~k~iVe~hgG~i~v~S~pG~---Gt~f~v~lP 809 (820)
T Consensus 110 ~Gl~l~~~~~----D~~~~~~~~~~~~~~~~~~~~~~ 142 (146)
T COG2172 110 LGLFLAKRLM----DEFSYERSEDGRNRLTKITLRKR 142 (146)
T ss_pred CCHHHHHHHH----EEEEEEEECCCCEEEEEEEECCC
T ss_conf 1378886211----07999960698558999996243