HHsearch alignment for GI: 254780413 and conserved domain: COG3290
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms].
Probab=100.00 E-value=1.6e-30 Score=241.50 Aligned_cols=315 Identities=21% Similarity=0.287 Sum_probs=235.5
Q ss_pred HHHHHHHHHHHHHCCHHEEECCCCEEEEEHHHHHHHHCCCHH--HCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEE
Q ss_conf 999999999974220430785998387215689988489603--207864433456456277899999886069840223
Q gi|254780413|r 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE--DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526 (820)
Q Consensus 449 ~~~~~L~~ile~~~~gI~~~D~~G~i~~~N~a~~~l~G~~~~--el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 526 (820)
T Consensus 212 ~l~~er~A~l~si~EGviAvd~~G~It~~N~~A~~ll~~~~~~~~~ig~~i~~v~~p~~~------l~~vl~~~~~~-~~ 284 (537)
T COG3290 212 TLLEERQAMLQSIKEGVIAVDKKGVITLINQAAQKLLGLRQPSGDPIGRSIVEVLPPDSD------LPEVLETGKPQ-HD 284 (537)
T ss_pred HHHHHHHHHHHHHHCEEEEECCCCEEEEHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCC------CHHHHHCCCCC-CC
T ss_conf 999999999987636289987898576112889998465676756446610376156367------57787507763-11
Q ss_pred EEEEEECCCCCEEEEEEEEEECCCC-CEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
Q ss_conf 4888763897289999998871788-739999865144443457654466887899999999998523453174899999
Q gi|254780413|r 527 KITLGSTKEEKLLSLRIIIKKLPFS-SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605 (820)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~Dite~k~~e~el~~~~~~~e~~~~~k~~fla~vsHElrtPL~~I~g 605 (820)
T Consensus 285 ~e~~---~ng~~~i~nr~pI~~~~~~~GaI~tFRdktei~~L~eqLt~vr~ya~a--------LRaq~HEfmNkLhtI~G 353 (537)
T COG3290 285 EEIR---INGRLLVANRVPIRSGGQIVGAIITFRDKTEIKKLTEQLTGVRQYAEA--------LRAQSHEFMNKLHTILG 353 (537)
T ss_pred HHHH---CCCEEEEEEECCEEECCEEEEEEEEEECHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHH
T ss_conf 3441---477599998523788897768999876377899999999989999999--------98852888888999987
Q ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHHHHHCCEE
Q ss_conf 99999731268778889999999999989999999999999866431885200033179999999999999998737808
Q gi|254780413|r 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 (820)
Q Consensus 606 ~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~~l~~li~dlLd~srieaG~~~l~~~~vdl~~lv~~~~~~~~~~a~~~~i~ 685 (820)
T Consensus 354 Llql~-----------~yd~a~~~I~~~~~~qq~~~~~l~~~--i---------~----~~~lAg~LlgK~~rArElgv~ 407 (537)
T COG3290 354 LLQLG-----------EYDDALDYIQQESEEQQELIDSLSEK--I---------K----DPVLAGFLLGKISRARELGVS 407 (537)
T ss_pred HHHHC-----------CHHHHHHHHHHHHHHHHHHHHHHHHH--C---------C----CHHHHHHHHHHHHHHHHCCCE
T ss_conf 88505-----------37899999999876404568999985--1---------2----088899988689999972965
Q ss_pred EEEEECCCCCE--EEECHHHHHHHHHHHHHHHHHCCC---CCCEEEEEEEECCCCEEEEEEEECCCCCCHHHHHHHCCCC
Q ss_conf 99973798846--898889999999999988887188---9787999999804994999999788978988866423771
Q gi|254780413|r 686 IRTSFANNIPR--ILADLRSVKQIALNILSNAIHFTP---SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPF 760 (820)
Q Consensus 686 l~~~~~~~lp~--v~~D~~~l~Qvl~NLl~NAik~t~---~gg~v~v~~~~~~~~~v~i~V~DtG~GI~~~~~~~iFepF 760 (820)
T Consensus 408 l~Id~~S~l~~~p~~~~~~~litIlGNLidNA~eA~~~~~~~k~I~l~i~~~~-~~lvieV~D~G~GI~~~~~~~iFe~G 486 (537)
T COG3290 408 LIIDPNSQLPQLPSELQPHDLVTILGNLIDNALEALLAPEENKEIELSLSDRG-DELVIEVADTGPGIPPEVRDKIFEKG 486 (537)
T ss_pred EEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECC-CEEEEEEECCCCCCCHHHHHHHHHCC
T ss_conf 99757986788987667678999999988778888515578967999998369-87999995799998968877787348
Q ss_pred EEECCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEECCCCC
Q ss_conf 87347876667888606899999999619869999788995399999635777
Q gi|254780413|r 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813 (820)
Q Consensus 761 ~~~~~~~~~~~~GtGLGLai~k~iVe~hgG~i~v~S~pG~Gt~f~v~lP~~~~ 813 (820)
T Consensus 487 ~Stk~-----~~~rGiGL~Lvkq~V~~~~G~I~~~s~~~~Gt~F~i~iP~~~~ 534 (537)
T COG3290 487 VSTKN-----TGGRGIGLYLVKQLVERLGGSIEVESEKGQGTRFSIYIPKVKE 534 (537)
T ss_pred CCCCC-----CCCCCHHHHHHHHHHHHCCCEEEEEECCCCCEEEEEECCCCCC
T ss_conf 41467-----7887612889999998749669995078981499998888766