HHsearch alignment for GI: 254780413 and conserved domain: COG3920
>COG3920 Signal transduction histidine kinase [Signal transduction mechanisms].
Probab=99.61 E-value=2e-12 Score=108.97 Aligned_cols=211 Identities=21% Similarity=0.285 Sum_probs=146.0
Q ss_pred EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH-
Q ss_conf 6514444345765446688789999999999852345317489999999999731268778889999999999989999-
Q gi|254780413|r 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV- 637 (820)
Q Consensus 559 ~Dite~k~~e~el~~~~~~~e~~~~~k~~fla~vsHElrtPL~~I~g~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~~l- 637 (820)
T Consensus 2 ~~~~~~~~~e~~~~~~---------~~~~ll~Ei~HRVKNnLqiIsSll~lq~r~-~~---~~-~~e~---~~~~~~Ri~ 64 (221)
T COG3920 2 LLTTARKETEERLAES---------EKELLLREIHHRVKNNLQIISSLLRLQARK-FE---DE-VLEA---LRESQNRIQ 64 (221)
T ss_pred CHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CC---CH-HHHH---HHHHHHHHH
T ss_conf 0478888899999999---------899999999999887999999999977752-36---67-8999---999988999
Q ss_pred -HHHHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCEEEEC-HHHHHHHHHHHHHHH
Q ss_conf -999999999866431885200033179999999999999998737808999737988468988-899999999999888
Q gi|254780413|r 638 -LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILAD-LRSVKQIALNILSNA 715 (820)
Q Consensus 638 -~~li~dlLd~srieaG~~~l~~~~vdl~~lv~~~~~~~~~~a~~~~i~l~~~~~~~lp~v~~D-~~~l~Qvl~NLl~NA 715 (820)
T Consensus 65 sla~~He~L~~s---------~~~~~~~~~y~~~L~~~l~~~~~~~~~~~~~~~~~~~-~l~~d~A~~Lgliv~EL~tNa 134 (221)
T COG3920 65 SLALIHELLYKS---------GDDTWDFASYLELLASNLFPSYGGKDIRLILDSGPNV-FLDPDTAVPLGLIVHELVTNA 134 (221)
T ss_pred HHHHHHHHHCCC---------CCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCE-EECHHHHHHHHHHHHHHHHHH
T ss_conf 999999998068---------8651759999999999988762788752788228862-267367889999999999988
Q ss_pred HHCCCC---CCEEEEEEEECCCC-EEEEEEEECCCCCCHHHHHHHCCCCEEECCCCCCCCCCCCCHHHHHHHHH-HHCCC
Q ss_conf 871889---78799999980499-49999997889789888664237718734787666788860689999999-96198
Q gi|254780413|r 716 IHFTPS---GGQIIISTTHTSNE-EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV-DANMG 790 (820)
Q Consensus 716 ik~t~~---gg~v~v~~~~~~~~-~v~i~V~DtG~GI~~~~~~~iFepF~~~~~~~~~~~~GtGLGLai~k~iV-e~hgG 790 (820)
T Consensus 135 ~Khaf~~~~~G~I~I~~~~~~~~~~~~l~v~deg~G~~~~~------~~-----------~~~g~G~~Lv~~lv~~q~~g 197 (221)
T COG3920 135 LKHAFLSRPGGEIRITLSREGDGGRFLLTVWDEGGGPPVEA------PL-----------SRGGFGLQLVERLVPEQLGG 197 (221)
T ss_pred HHHCCCCCCCCEEEEEEEECCCCCEEEEEEEECCCCCCCCC------CC-----------CCCCCHHHHHHHHHHHHCCC
T ss_conf 98617888997799999984799717999987898988888------87-----------89983799999999996797
Q ss_pred EEEEEEECCCCEEEEEEECCCCCCC
Q ss_conf 6999978899539999963577788
Q gi|254780413|r 791 KFYIFSTPAKGTLIEIIFPLYDTSH 815 (820)
Q Consensus 791 ~i~v~S~pG~Gt~f~v~lP~~~~~~ 815 (820)
T Consensus 198 ~~~~~~~~--Gt~~~i~~~~~~~~~ 220 (221)
T COG3920 198 ELEDERPD--GTEFRLRFPLSEAAS 220 (221)
T ss_pred EEEEECCC--CEEEEEEEECCCCCC
T ss_conf 27997499--779999988644346