HHsearch alignment for GI: 254780413 and conserved domain: COG4564
>COG4564 Signal transduction histidine kinase [Signal transduction mechanisms].
Probab=99.32 E-value=2.5e-08 Score=78.90 Aligned_cols=310 Identities=17% Similarity=0.193 Sum_probs=171.8
Q ss_pred HHHCCH-HEEECCCCEEEEEHHHHHHHHCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEE--EE---
Q ss_conf 742204-307859983872156899884896032078644334564562778999998860698402234888--76---
Q gi|254780413|r 459 EATSDG-IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL--GS--- 532 (820)
Q Consensus 459 e~~~~g-I~~~D~~G~i~~~N~a~~~l~G~~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--- 532 (820)
T Consensus 90 dyG~DGYFF~YD~~G~---------NlvHPrQpelvG~nlw~L~D~rGd~~Iq~Li~kAq~GGG~~qYlWeKPSs~e~v~ 160 (459)
T COG4564 90 DYGSDGYFFVYDYQGT---------NLVHPRQPELVGQNLWQLTDPRGDRVIQALIAKAQEGGGLHQYLWEKPSSHETVD 160 (459)
T ss_pred CCCCCCEEEEEECCCC---------CCCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCHH
T ss_conf 6588853899945886---------1457787454563255411877585999999997707975777413897444234
Q ss_pred -----CCCCCEEEEEEEEEECCCCCE----------------EE----------------EEEEEHHHHHHHHHHHHHHH
Q ss_conf -----389728999999887178873----------------99----------------99865144443457654466
Q gi|254780413|r 533 -----TKEEKLLSLRIIIKKLPFSSC----------------YS----------------LTMHDISEWKQEKNKLSHAK 575 (820)
Q Consensus 533 -----~~~~~~~~~~~~~~~~~~~~~----------------~~----------------~v~~Dite~k~~e~el~~~~ 575 (820)
T Consensus 161 KLsyaa~ldkW~WMiGTGlYldDv~~~~~~~~~~~~anId~tf~~Vv~iavv~vllV~~t~lalNl~ehRlAD~kLkeL~ 240 (459)
T COG4564 161 KLSYAAGLDKWEWMIGTGLYLDDVSAETAAAQAAVRANIDTTFLIVVLIAVVAVLLVFATCLALNLREHRLADKKLKELA 240 (459)
T ss_pred HHCCCCCCCCCCEEEECCEEHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 42113576631124203302275899999999998617452679999999999999999998731198774555799999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8878999999999985234531----748999999999973126877888999999999998999999999999986643
Q gi|254780413|r 576 KIAEKESSHKSDFLARVSHEIR----TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651 (820)
Q Consensus 576 ~~~e~~~~~k~~fla~vsHElr----tPL~~I~g~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~~l~~li~dlLd~srie 651 (820)
T Consensus 241 ---qrvv~tQedEr~rlaRELHDGIsQ~LVs~k~~lela~~ql~~p~~~-----a~~aieKaa~aL~~Ai~EVRRiSH-- 310 (459)
T COG4564 241 ---QRVVDTQEDERARLARELHDGISQNLVSVKCALELAARQLNPPKGG-----AHPAIEKAADALNGAIKEVRRISH-- 310 (459)
T ss_pred ---HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-----CCHHHHHHHHHHHHHHHHHHHHCC--
T ss_conf ---9984120678999999875007777799999999996267799888-----750156678999989999998502--
Q ss_pred CCCCCCCEEEEC---HHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCEE-EECHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 188520003317---9999999999999998737808999737988468-988899999999999888871889787999
Q gi|254780413|r 652 SGKMNLHFEPVS---LDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQIII 727 (820)
Q Consensus 652 aG~~~l~~~~vd---l~~lv~~~~~~~~~~a~~~~i~l~~~~~~~lp~v-~~D~~~l~Qvl~NLl~NAik~t~~gg~v~v 727 (820)
T Consensus 311 ----~LRP~~LDDLGL~aALe~L~~~f~---~~tg~~itle~~~~p~~l~~e~~talyRv~QEaltNIErHa~A-trv~i 382 (459)
T COG4564 311 ----DLRPRALDDLGLTAALEALLEDFK---ERTGIEITLEFDTQPGKLKPEVATALYRVVQEALTNIERHAGA-TRVTI 382 (459)
T ss_pred ----CCCHHHHHHHHHHHHHHHHHHHHH---HCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC-EEEEE
T ss_conf ----357455544307999999999864---3668379997057864478278889999999998778860687-17999
Q ss_pred EEEECCCCEEEEEEEECCCCCCHHHHHHHCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEEE
Q ss_conf 99980499499999978897898886642377187347876667888606899999999619869999788995399999
Q gi|254780413|r 728 STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 (820)
Q Consensus 728 ~~~~~~~~~v~i~V~DtG~GI~~~~~~~iFepF~~~~~~~~~~~~GtGLGLai~k~iVe~hgG~i~v~S~pG~Gt~f~v~ 807 (820)
T Consensus 383 ll~-~~~d~vql~vrDnG~GF~~~~~~~----------------~~~GiGLRNMrERma~~GG~~~v~s~p~-GTel~v~ 444 (459)
T COG4564 383 LLQ-QMGDMVQLMVRDNGVGFSVKEALQ----------------KRHGIGLRNMRERMAHFGGELEVESSPQ-GTELTVL 444 (459)
T ss_pred EEC-CCCCCEEEEEECCCCCCCCHHHCC----------------CCCCCCCCCHHHHHHHHCCEEEEEECCC-CCEEEEE
T ss_conf 861-577606999823899856165316----------------7556451009999997486589975698-7279998
Q ss_pred ECCCCC
Q ss_conf 635777
Q gi|254780413|r 808 FPLYDT 813 (820)
Q Consensus 808 lP~~~~ 813 (820)
T Consensus 445 Lp~~~~ 450 (459)
T COG4564 445 LPLDAS 450 (459)
T ss_pred ECCHHH
T ss_conf 140466