HHsearch alignment for GI: 254780413 and conserved domain: COG4564

>COG4564 Signal transduction histidine kinase [Signal transduction mechanisms].
Probab=99.32  E-value=2.5e-08  Score=78.90  Aligned_cols=310  Identities=17%  Similarity=0.193  Sum_probs=171.8

Q ss_pred             HHHCCH-HEEECCCCEEEEEHHHHHHHHCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEE--EE---
Q ss_conf             742204-307859983872156899884896032078644334564562778999998860698402234888--76---
Q gi|254780413|r  459 EATSDG-IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL--GS---  532 (820)
Q Consensus       459 e~~~~g-I~~~D~~G~i~~~N~a~~~l~G~~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---  532 (820)
T Consensus        90 dyG~DGYFF~YD~~G~---------NlvHPrQpelvG~nlw~L~D~rGd~~Iq~Li~kAq~GGG~~qYlWeKPSs~e~v~  160 (459)
T COG4564          90 DYGSDGYFFVYDYQGT---------NLVHPRQPELVGQNLWQLTDPRGDRVIQALIAKAQEGGGLHQYLWEKPSSHETVD  160 (459)
T ss_pred             CCCCCCEEEEEECCCC---------CCCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCHH
T ss_conf             6588853899945886---------1457787454563255411877585999999997707975777413897444234


Q ss_pred             -----CCCCCEEEEEEEEEECCCCCE----------------EE----------------EEEEEHHHHHHHHHHHHHHH
Q ss_conf             -----389728999999887178873----------------99----------------99865144443457654466
Q gi|254780413|r  533 -----TKEEKLLSLRIIIKKLPFSSC----------------YS----------------LTMHDISEWKQEKNKLSHAK  575 (820)
Q Consensus       533 -----~~~~~~~~~~~~~~~~~~~~~----------------~~----------------~v~~Dite~k~~e~el~~~~  575 (820)
T Consensus       161 KLsyaa~ldkW~WMiGTGlYldDv~~~~~~~~~~~~anId~tf~~Vv~iavv~vllV~~t~lalNl~ehRlAD~kLkeL~  240 (459)
T COG4564         161 KLSYAAGLDKWEWMIGTGLYLDDVSAETAAAQAAVRANIDTTFLIVVLIAVVAVLLVFATCLALNLREHRLADKKLKELA  240 (459)
T ss_pred             HHCCCCCCCCCCEEEECCEEHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             42113576631124203302275899999999998617452679999999999999999998731198774555799999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             8878999999999985234531----748999999999973126877888999999999998999999999999986643
Q gi|254780413|r  576 KIAEKESSHKSDFLARVSHEIR----TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE  651 (820)
Q Consensus       576 ~~~e~~~~~k~~fla~vsHElr----tPL~~I~g~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~~l~~li~dlLd~srie  651 (820)
T Consensus       241 ---qrvv~tQedEr~rlaRELHDGIsQ~LVs~k~~lela~~ql~~p~~~-----a~~aieKaa~aL~~Ai~EVRRiSH--  310 (459)
T COG4564         241 ---QRVVDTQEDERARLARELHDGISQNLVSVKCALELAARQLNPPKGG-----AHPAIEKAADALNGAIKEVRRISH--  310 (459)
T ss_pred             ---HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-----CCHHHHHHHHHHHHHHHHHHHHCC--
T ss_conf             ---9984120678999999875007777799999999996267799888-----750156678999989999998502--


Q ss_pred             CCCCCCCEEEEC---HHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCEE-EECHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf             188520003317---9999999999999998737808999737988468-988899999999999888871889787999
Q gi|254780413|r  652 SGKMNLHFEPVS---LDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQIII  727 (820)
Q Consensus       652 aG~~~l~~~~vd---l~~lv~~~~~~~~~~a~~~~i~l~~~~~~~lp~v-~~D~~~l~Qvl~NLl~NAik~t~~gg~v~v  727 (820)
T Consensus       311 ----~LRP~~LDDLGL~aALe~L~~~f~---~~tg~~itle~~~~p~~l~~e~~talyRv~QEaltNIErHa~A-trv~i  382 (459)
T COG4564         311 ----DLRPRALDDLGLTAALEALLEDFK---ERTGIEITLEFDTQPGKLKPEVATALYRVVQEALTNIERHAGA-TRVTI  382 (459)
T ss_pred             ----CCCHHHHHHHHHHHHHHHHHHHHH---HCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC-EEEEE
T ss_conf             ----357455544307999999999864---3668379997057864478278889999999998778860687-17999


Q ss_pred             EEEECCCCEEEEEEEECCCCCCHHHHHHHCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEEE
Q ss_conf             99980499499999978897898886642377187347876667888606899999999619869999788995399999
Q gi|254780413|r  728 STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII  807 (820)
Q Consensus       728 ~~~~~~~~~v~i~V~DtG~GI~~~~~~~iFepF~~~~~~~~~~~~GtGLGLai~k~iVe~hgG~i~v~S~pG~Gt~f~v~  807 (820)
T Consensus       383 ll~-~~~d~vql~vrDnG~GF~~~~~~~----------------~~~GiGLRNMrERma~~GG~~~v~s~p~-GTel~v~  444 (459)
T COG4564         383 LLQ-QMGDMVQLMVRDNGVGFSVKEALQ----------------KRHGIGLRNMRERMAHFGGELEVESSPQ-GTELTVL  444 (459)
T ss_pred             EEC-CCCCCEEEEEECCCCCCCCHHHCC----------------CCCCCCCCCHHHHHHHHCCEEEEEECCC-CCEEEEE
T ss_conf             861-577606999823899856165316----------------7556451009999997486589975698-7279998


Q ss_pred             ECCCCC
Q ss_conf             635777
Q gi|254780413|r  808 FPLYDT  813 (820)
Q Consensus       808 lP~~~~  813 (820)
T Consensus       445 Lp~~~~  450 (459)
T COG4564         445 LPLDAS  450 (459)
T ss_pred             ECCHHH
T ss_conf             140466