HHsearch alignment for GI: 254780413 and conserved domain: COG5000

>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms].
Probab=94.82  E-value=0.31  Score=27.07  Aligned_cols=53  Identities=8%  Similarity=0.024  Sum_probs=41.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCEEEEE-CCEEEEECHHHHHHHCCCCHHHHCC
Q ss_conf             3456545556578999963499789970-9958872068898837984477224
Q gi|254780413|r  310 SLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEI  362 (820)
Q Consensus       310 ~~~~~~~~~~~~~~~ild~lp~gv~i~~-~gri~~~N~a~~~l~G~~~~e~l~~  362 (820)
T Consensus       360 ~ak~~~e~rr~f~E~VLsgvtaGVi~~d~~g~i~t~N~~ae~~l~~~~~~~~G~  413 (712)
T COG5000         360 RAKDALEQRRRFLEAVLSGLTAGVIGFDNRGCITTVNPSAEQILGKPFDQLLGQ  413 (712)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEECCHHHHHHCCCHHHHHCH
T ss_conf             878889999988999981585038997478707762601788846870676440