HHsearch alignment for GI: 254780413 and conserved domain: COG5000
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms].
Probab=94.82 E-value=0.31 Score=27.07 Aligned_cols=53 Identities=8% Similarity=0.024 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEEEE-CCEEEEECHHHHHHHCCCCHHHHCC
Q ss_conf 3456545556578999963499789970-9958872068898837984477224
Q gi|254780413|r 310 SLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEI 362 (820)
Q Consensus 310 ~~~~~~~~~~~~~~~ild~lp~gv~i~~-~gri~~~N~a~~~l~G~~~~e~l~~ 362 (820)
T Consensus 360 ~ak~~~e~rr~f~E~VLsgvtaGVi~~d~~g~i~t~N~~ae~~l~~~~~~~~G~ 413 (712)
T COG5000 360 RAKDALEQRRRFLEAVLSGLTAGVIGFDNRGCITTVNPSAEQILGKPFDQLLGQ 413 (712)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEECCHHHHHHCCCHHHHHCH
T ss_conf 878889999988999981585038997478707762601788846870676440