HHsearch alignment for GI: 254780413 and conserved domain: COG5002

>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms].
Probab=96.25  E-value=0.1  Score=30.63  Aligned_cols=125  Identities=10%  Similarity=-0.024  Sum_probs=72.3

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCEEE-EECCEEEEECHHHHHHHCCCCHHHHCCCCCCHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf             4565455565789999634997899-709958872068898837984477224676112202455451356789998750
Q gi|254780413|r  311 LSAYFDEGENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRS  389 (820)
Q Consensus       311 ~~~~~~~~~~~~~~ild~lp~gv~i-~~~gri~~~N~a~~~l~G~~~~e~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  389 (820)
T Consensus       102 aq~n~e~Er~kL~SvlayMtDGViATdRrG~iI~iN~~A~k~L~~~~E~~~~~~-i~e-lL~i---~d~y~--~~dL~e~  174 (459)
T COG5002         102 AQANTEQERRKLDSVLAYMTDGVIATDRRGKIILINKPALKMLGVSKEDALGRS-ILE-LLKI---EDTYT--FEDLVEK  174 (459)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCEEEECCCCCEEEECCHHHHHHCCCHHHHHCCC-HHH-HHCC---CCCEE--HHHHHHC
T ss_conf             987678888889989998707657645778689935079998486778771653-788-8577---54302--8888725


Q ss_pred             CCCEEEEEEEEEEEEECCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             586655999999997389449999996324333200233344567888899999999999
Q gi|254780413|r  390 DRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI  449 (820)
Q Consensus       390 ~g~~~~~~~~~~~i~~~g~~~~~l~~~~~~~~d~~~~~~~~~~~~~dit~~~~~~~~L~~  449 (820)
T Consensus       175 ~~s~---lld----~~~~~E~~~lrv~Fs~i~rEsGfisGlIaVlhDvTEqek~e~ErRe  227 (459)
T COG5002         175 NDSL---LLD----SSDEEEGYVLRVNFSVIQRESGFISGLIAVLHDVTEQEKVERERRE  227 (459)
T ss_pred             CCCE---EEE----ECCCCCCEEEEEEEEEEEECCCCCCEEEEEEECCCHHHHHHHHHHH
T ss_conf             9828---986----0478863799998888851146644069987314387888999999