HHsearch alignment for GI: 254780413 and conserved domain: COG5002
>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms].
Probab=96.25 E-value=0.1 Score=30.63 Aligned_cols=125 Identities=10% Similarity=-0.024 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCEEE-EECCEEEEECHHHHHHHCCCCHHHHCCCCCCHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf 4565455565789999634997899-709958872068898837984477224676112202455451356789998750
Q gi|254780413|r 311 LSAYFDEGENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRS 389 (820)
Q Consensus 311 ~~~~~~~~~~~~~~ild~lp~gv~i-~~~gri~~~N~a~~~l~G~~~~e~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 389 (820)
T Consensus 102 aq~n~e~Er~kL~SvlayMtDGViATdRrG~iI~iN~~A~k~L~~~~E~~~~~~-i~e-lL~i---~d~y~--~~dL~e~ 174 (459)
T COG5002 102 AQANTEQERRKLDSVLAYMTDGVIATDRRGKIILINKPALKMLGVSKEDALGRS-ILE-LLKI---EDTYT--FEDLVEK 174 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEECCCCCEEEECCHHHHHHCCCHHHHHCCC-HHH-HHCC---CCCEE--HHHHHHC
T ss_conf 987678888889989998707657645778689935079998486778771653-788-8577---54302--8888725
Q ss_pred CCCEEEEEEEEEEEEECCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 586655999999997389449999996324333200233344567888899999999999
Q gi|254780413|r 390 DRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI 449 (820)
Q Consensus 390 ~g~~~~~~~~~~~i~~~g~~~~~l~~~~~~~~d~~~~~~~~~~~~~dit~~~~~~~~L~~ 449 (820)
T Consensus 175 ~~s~---lld----~~~~~E~~~lrv~Fs~i~rEsGfisGlIaVlhDvTEqek~e~ErRe 227 (459)
T COG5002 175 NDSL---LLD----SSDEEEGYVLRVNFSVIQRESGFISGLIAVLHDVTEQEKVERERRE 227 (459)
T ss_pred CCCE---EEE----ECCCCCCEEEEEEEEEEEECCCCCCEEEEEEECCCHHHHHHHHHHH
T ss_conf 9828---986----0478863799998888851146644069987314387888999999