HHsearch alignment for GI: 254780413 and conserved domain: PRK03660

>PRK03660 anti-sigma F factor; Provisional.
Probab=99.51  E-value=3.2e-13  Score=114.79  Aligned_cols=103  Identities=26%  Similarity=0.419  Sum_probs=85.1

Q ss_pred             CHHHHHHHHHHHHHHHHHCC---CCCCEEEEEEEECCCCEEEEEEEECCCCCCHHHHHHHCCCCEEECCCCCCCCCCCCC
Q ss_conf             88999999999998888718---897879999998049949999997889789888664237718734787666788860
Q gi|254780413|r  700 DLRSVKQIALNILSNAIHFT---PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL  776 (820)
Q Consensus       700 D~~~l~Qvl~NLl~NAik~t---~~gg~v~v~~~~~~~~~v~i~V~DtG~GI~~~~~~~iFepF~~~~~~~~~~~~GtGL  776 (820)
T Consensus        36 ~~~di~lAV~EA~tNaI~H~y~~~~~g~I~I~~~~~-~~~l~I~V~D~G~Gid~--~~~~~~P~~t~~~~----~~~~Gl  108 (146)
T PRK03660         36 ELTEIKTAVSEAVTNAIIHGYENNPDGIVYIEAEIE-DEELEITVRDEGKGIED--VEEARQPLFTTKPE----LERSGM  108 (146)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEE-CCEEEEEEEECCCCCCC--HHHCCCCCCCCCCC----CCCCCH
T ss_conf             999999999999999998603679992799999980-99999999973789473--76643887766876----675640


Q ss_pred             HHHHHHHHHHHCCCEEEEEEECCCCEEEEEEECCCCC
Q ss_conf             6899999999619869999788995399999635777
Q gi|254780413|r  777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT  813 (820)
Q Consensus       777 GLai~k~iVe~hgG~i~v~S~pG~Gt~f~v~lP~~~~  813 (820)
T Consensus       109 Gl~li~~Lm----DeVei~s~~g~GTtV~m~k~l~~~  141 (146)
T PRK03660        109 GFTFMESFM----DEVEVESEPGKGTTIRMKKKLKKS  141 (146)
T ss_pred             HHHHHHHHC----CEEEEEECCCCCEEEEEEEEECCC
T ss_conf             589999838----869999559997899999997554