HHsearch alignment for GI: 254780413 and conserved domain: PRK04069
>PRK04069 serine-protein kinase RsbW; Provisional.
Probab=98.77 E-value=2.2e-07 Score=72.07 Aligned_cols=110 Identities=16% Similarity=0.238 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHHHHHCC---CCCCEEEEEEEECCCCEEEEEEEECCCCCCHHHHHHHCCCCEEECCCCCCCCCCCCCHH
Q ss_conf 999999999998888718---89787999999804994999999788978988866423771873478766678886068
Q gi|254780413|r 702 RSVKQIALNILSNAIHFT---PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778 (820)
Q Consensus 702 ~~l~Qvl~NLl~NAik~t---~~gg~v~v~~~~~~~~~v~i~V~DtG~GI~~~~~~~iFepF~~~~~~~~~~~~GtGLGL 778 (820)
T Consensus 41 ~di~LAV~EA~tNaI~Hay~~~~~~~i~i~~~~~~~-~l~i~V~D~G~gfD~~~~~~~~~P~~~~~~l~--~~~~gGlGl 117 (158)
T PRK04069 41 EDLKIAVSEACTNAVQHAYKEEEVGEINIRFEIYED-RLEIVVADNGDSFDYETTKSKIGPYDPSEPID--DLREGGLGL 117 (158)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECC-EEEEEEEECCCCCCHHHCCCCCCCCCCCCCHH--HCCCCCCHH
T ss_conf 889999999999999975156999479999999599-99999999174879567432458888888611--136787409
Q ss_pred HHHHHHHHHCCCEEEEEEECCCCEEEEEEECC--CCCCCCCCCC
Q ss_conf 99999999619869999788995399999635--7778886569
Q gi|254780413|r 779 PLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL--YDTSHPHDCI 820 (820)
Q Consensus 779 ai~k~iVe~hgG~i~v~S~pG~Gt~f~v~lP~--~~~~~p~~~~ 820 (820)
T Consensus 118 ~lI~~lmD----eV~~~~--~~Gt~v~m~K~l~~~e~~~~~~~~ 155 (158)
T PRK04069 118 FLIETLMD----DVTVYK--DSGVTVSMTKYINREQVENNGERI 155 (158)
T ss_pred HHHHHHCC----EEEEEE--CCCEEEEEEEEECHHHCCCCCCCC
T ss_conf 99997525----589990--898299999996715515676612