HHsearch alignment for GI: 254780413 and conserved domain: PRK09470
>PRK09470 cpxA two-component sensor protein; Provisional.
Probab=100.00 E-value=0 Score=388.65 Aligned_cols=241 Identities=22% Similarity=0.351 Sum_probs=211.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 44434576544668878999999999985234531748999999999973126877888999999999998999999999
Q gi|254780413|r 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642 (820)
Q Consensus 563 e~k~~e~el~~~~~~~e~~~~~k~~fla~vsHElrtPL~~I~g~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~~l~~li~ 642 (820)
T Consensus 221 Ei~~La~~fN~M~~~L~~~~~~q~~f~advSHELRTPLt~i~~~~~ll~~~~-~---~~---~~l~~i~~e~~rl~~li~ 293 (461)
T PRK09470 221 EFRAAGASFNQMVTALERMMSSQQRLLSDISHELRTPLTRLQLATALLRRRQ-G---ES---KELERIETEAQRLDSMIN 293 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCC-C---CH---HHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999999999998645553278999999999864044-7---85---999999999999999999
Q ss_pred HHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCEEEECHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 99998664318852000331799999999999999987378089997379884689888999999999998888718897
Q gi|254780413|r 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722 (820)
Q Consensus 643 dlLd~srieaG~~~l~~~~vdl~~lv~~~~~~~~~~a~~~~i~l~~~~~~~lp~v~~D~~~l~Qvl~NLl~NAik~t~~g 722 (820)
T Consensus 294 ~lL~lsr~~~~~-~~~~e~~~l~~l~~~v~~~~~~~a~~~~~~l~~~~~~~~~~v~~d~~~l~~vl~NLl~NAikys~~- 371 (461)
T PRK09470 294 DLLVLSRNQVKN-HLVRETIKANSLWSEVLEDAAFEAEQMGKSLTVNQPPGPWPINGNPNALESALENIVRNALRYSHT- 371 (461)
T ss_pred HHHHHHHHCCCC-CCCCCEECHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEECHHHHHHHHHHHHHHHHHHCCC-
T ss_conf 999997620546-555651539999999999999999975976999727875489978999999999999999974899-
Q ss_pred CEEEEEEEECCCCEEEEEEEECCCCCCHHHHHHHCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCE
Q ss_conf 87999999804994999999788978988866423771873478766678886068999999996198699997889953
Q gi|254780413|r 723 GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 (820)
Q Consensus 723 g~v~v~~~~~~~~~v~i~V~DtG~GI~~~~~~~iFepF~~~~~~~~~~~~GtGLGLai~k~iVe~hgG~i~v~S~pG~Gt 802 (820)
T Consensus 372 -~i~v~~~~~~-~~~~i~V~D~G~GI~~e~l~~iFepFyR~d~sr~~~~gG~GLGLaIv~~iv~~hgG~i~~~~~~~~G~ 449 (461)
T PRK09470 372 -KIEVGFSVDK-DGLTITVDDDGPGVPEEEREQIFRPFYRVDEARDRESGGTGLGLAIVENAIQQHRGWVKAEDSPLGGL 449 (461)
T ss_pred -CEEEEEEEEC-CEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCEE
T ss_conf -5899999999-99999999779998999998762797228988889999713889999999998299899997799856
Q ss_pred EEEEEECCCCCC
Q ss_conf 999996357778
Q gi|254780413|r 803 LIEIIFPLYDTS 814 (820)
Q Consensus 803 ~f~v~lP~~~~~ 814 (820)
T Consensus 450 ~~~i~LPl~~~~ 461 (461)
T PRK09470 450 RLTIWLPLYKRS 461 (461)
T ss_pred EEEEEEECCCCC
T ss_conf 999996588999