HHsearch alignment for GI: 254780413 and conserved domain: PRK09776
>PRK09776 putative sensor protein; Provisional.
Probab=99.87 E-value=1.8e-19 Score=160.55 Aligned_cols=266 Identities=11% Similarity=-0.032 Sum_probs=195.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCEEEEE-CCEEEEECHHHHHHHCCCCHHHHCCCCCCHHHHCCCCCCHHHHHHHHH
Q ss_conf 1013456545556578999963499789970-995887206889883798447722467611220245545135678999
Q gi|254780413|r 307 NHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385 (820)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~ild~lp~gv~i~~-~gri~~~N~a~~~l~G~~~~e~l~~~~~~~~l~~~~~~~~~~~~~~~~ 385 (820)
T Consensus 291 ~~r~~~~~l~~SE~rfR~~~e~saiGmAlV~~dGr~l~VN~alc~mlGYs~~ELl-~ltf~d-iThPdDl~---~dl~~~ 365 (1116)
T PRK09776 291 AFRAERKHISESETRFRNAMEYSAIGMALVGTEGQWLQVNKALCQFLGYSQEELR-GLTFQQ-LTWPEDLN---KDLQQV 365 (1116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCEEEECHHHHHHHCCCHHHHH-HCCHHH-HCCCCCHH---HHHHHH
T ss_conf 9998888877679999999874666469986898189816999988498999985-298988-16962177---789999
Q ss_pred HHHHCCCEEEEEEEEEEEEECCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
Q ss_conf 87505866559999999973894499999963243332002333445678888999999999999999999997422043
Q gi|254780413|r 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI 465 (820)
Q Consensus 386 ~~~~~g~~~~~~~~~~~i~~~g~~~~~l~~~~~~~~d~~~~~~~~~~~~~dit~~~~~~~~L~~~~~~L~~ile~~~~gI 465 (820)
T Consensus 366 ~~LlaGei~~y~lEKRyirkDG~~vW~-~ltvSlvRd~~G~p~~fI~~v~DIterK~aE~~lr~l~erl~la~ea~~iGi 444 (1116)
T PRK09776 366 EKLLSGEINSYSMEKRYYNRDGDVVWA-LLAVSLVRDTDGTPLYFIAQIEDINELKRTEQVNERLMERITLANEAGGIGI 444 (1116)
T ss_pred HHHHCCCCCCCCCEEEEECCCCCEEEE-EEEEEEEECCCCCEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCE
T ss_conf 999769966454112467369979999-9899999769998448999997333779999999999999999986247663
Q ss_pred EEECCCCEEEEEHHHHHHHHCCCHHHC-CCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCEEEEEEE
Q ss_conf 078599838721568998848960320-7864433456456277899999886069840223488876389728999999
Q gi|254780413|r 466 AIINREGIILSTNRAVSKLFGYPVEDI-LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544 (820)
Q Consensus 466 ~~~D~~G~i~~~N~a~~~l~G~~~~el-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (820)
T Consensus 445 we~d~~~~~i~~~~r~~~l~g~~~~~~~~~~~w~~~ihPdD~~~v~~~~~~~l~~~~~~d~E~Rl--~~~dG~~r~i~~~ 522 (1116)
T PRK09776 445 WEWDLKPNIISWDKRMFELYEIPPHIKPNWQVWYACLHPEDRQRVEKEIRDALQGRSPFKLEFRI--VVPDGEIRHIRAL 522 (1116)
T ss_pred EEEECCCCCEECCHHHHHHHCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCEEEE--ECCCCCEEEEEEE
T ss_conf 55205665021137899984888222668899987239156899999999997158875604678--8479978999862
Q ss_pred E--EECCCCC--EEEEEEEEHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8--8717887--3999986514444345765446688789
Q gi|254780413|r 545 I--KKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEK 580 (820)
Q Consensus 545 ~--~~~~~~~--~~~~v~~Dite~k~~e~el~~~~~~~e~ 580 (820)
T Consensus 523 a~~~~d~~G~~~r~~G~~~DITe~K~~eeaL~e~~erl~~ 562 (1116)
T PRK09776 523 ANRVLNKDGEVERLLGINMDMTEVRQLNEALFEEKERLHI 562 (1116)
T ss_pred EEEEECCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHH
T ss_conf 1489868998898873132320778999999999999999