HHsearch alignment for GI: 254780413 and conserved domain: PRK09959

>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional.
Probab=100.00  E-value=0  Score=582.18  Aligned_cols=371  Identities=22%  Similarity=0.301  Sum_probs=288.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEECCCCEEEEEHHHHHHHHCCCHHHCCCCCCCCCCCCC--CHHHHH
Q ss_conf             678888999999999999999999997422043078599838721568998848960320786443345645--627789
Q gi|254780413|r  433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN--TPSVMN  510 (820)
Q Consensus       433 ~~~dit~~~~~~~~L~~~~~~L~~ile~~~~gI~~~D~~G~i~~~N~a~~~l~G~~~~el~g~~~~~~~~~~--~~~~~~  510 (820)
T Consensus       557 L~r~ir~R~~ae~~L~~ql~f~~~L~d~iP~pi~v~d~~g~~i~~N~a~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~  636 (1197)
T PRK09959        557 LLRSVRRRKVIQGDLENQISFRKALSDSLPNPTYVVNWQGNVISHNSAFEHYFTADYYKNAMLPLENSESPFKDVFSNTH  636 (1197)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCHHHHCCCCCCCCCCHHHHHHHHHH
T ss_conf             99999999999999998899999998369987699825561224118889875231444213565322221567777778


Q ss_pred             HHHHHHHCCCCCCEEEEEEE-EECCCCCEEEEEEEEEE--CCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99998860698402234888-76389728999999887--1788739999865144443457654466887899999999
Q gi|254780413|r  511 HYLTEILSLDLRQTLEKITL-GSTKEEKLLSLRIIIKK--LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD  587 (820)
Q Consensus       511 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~Dite~k~~e~el~~~~~~~e~~~~~k~~  587 (820)
T Consensus       637 ~~~~~~~~~~--~~~~~~~~~~~g~~~~~i~~w~~~~~~~~~~~~~~i~gw~DITerk~~e~~L~~Ak~~Ae~An~AKS~  714 (1197)
T PRK09959        637 EVTAETKENR--TIYTQVFEIDNGIEKRCINHWHTLCNLPASDHAVYICGWQDITETRDLIHALEVERNKAINATVAKSQ  714 (1197)
T ss_pred             HHHHHHHHCC--CCCCEEEECCCCCCCEEEEEEEEEECCCCCCCEEEECCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9987531012--10001453057754236775310003764444010115464128999999999999999999888888


Q ss_pred             HHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECHHH
Q ss_conf             998523453174899999999997312687788899-9999999998999999999999986643188520003317999
Q gi|254780413|r  588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY-IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE  666 (820)
Q Consensus       588 fla~vsHElrtPL~~I~g~~~~l~~~~~~~~~~~~~-~~~l~~i~~~~~~l~~li~dlLd~srieaG~~~l~~~~vdl~~  666 (820)
T Consensus       715 FLA~MSHEIRTPLn~IiG~~eLL~~~~l----~~~q~~~~l~~~~~Sa~~LL~LInDILD~SKIEaG~l~l~~~~~~l~~  790 (1197)
T PRK09959        715 FLATMSHEIRTPISSIMGFLELLSGSGL----SKEQRVEAISLAYATGQSLLGLIGEILDVDKIESGNYQLQPQWVDIPT  790 (1197)
T ss_pred             HHHHCCHHHCCHHHHHHHHHHHHHCCCC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECHHH
T ss_conf             8874735316568999999999846899----989999999999999999999888889998985388621452017999


Q ss_pred             HHHHHHHHHHHHHHHCCEEEEEEECCCCC-EEEECHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEE--CCC--CEEEEEE
Q ss_conf             99999999999987378089997379884-689888999999999998888718897879999998--049--9499999
Q gi|254780413|r  667 AVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH--TSN--EEVILRV  741 (820)
Q Consensus       667 lv~~~~~~~~~~a~~~~i~l~~~~~~~lp-~v~~D~~~l~Qvl~NLl~NAik~t~~gg~v~v~~~~--~~~--~~v~i~V  741 (820)
T Consensus       791 li~~v~~~~~~~A~~K~l~l~~~~~~p~~~~v~~D~~Rl~QIL~NLlsNAIKFT~~G~-V~i~~~~~~~~~~~~~l~~~V  869 (1197)
T PRK09959        791 LVQNTCHSFGAIAASKSIALSCSSTFPEHYLVKIDPQAFKQVLSNLLSNALKFTTEGA-VKITTSLGHIDDNHAVIKMTI  869 (1197)
T ss_pred             HHHHHHHHHHHHHHHCCCEEEEECCCCCCCEECCCHHHHHHHHHHHHHHHCCCCCCCE-EEEEEEEEECCCCEEEEEEEE
T ss_conf             9999999999999967968999558987513526788999999999875374687978-999999865179806999999


Q ss_pred             EECCCCCCHHHHHHHCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEECCCC
Q ss_conf             97889789888664237718734787666788860689999999961986999978899539999963577
Q gi|254780413|r  742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD  812 (820)
Q Consensus       742 ~DtG~GI~~~~~~~iFepF~~~~~~~~~~~~GtGLGLai~k~iVe~hgG~i~v~S~pG~Gt~f~v~lP~~~  812 (820)
T Consensus       870 ~DTGiGI~~~~~~~iF~pF~Q~s--~~r~~~GTGLGLaI~k~LvelMgG~I~v~S~~G~GS~F~~~lpl~~  938 (1197)
T PRK09959        870 MDSGSGLSQEEQQQLFKRYSQTS--AGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITIPVEI  938 (1197)
T ss_pred             EECCCCCCHHHHHHHCCCCCCCC--CCCCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCEEEEEEEECCC
T ss_conf             97787889889975367862477--8878898483599999999987992899935999449999997564