HHsearch alignment for GI: 254780413 and conserved domain: PRK10755

>PRK10755 sensor protein BasS/PmrB; Provisional.
Probab=100.00  E-value=0  Score=364.70  Aligned_cols=232  Identities=18%  Similarity=0.288  Sum_probs=198.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             44434576544668878999999999985234531748999999999973126877888999999999998999999999
Q gi|254780413|r  563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN  642 (820)
Q Consensus       563 e~k~~e~el~~~~~~~e~~~~~k~~fla~vsHElrtPL~~I~g~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~~l~~li~  642 (820)
T Consensus       121 El~~L~~~fN~M~~rL~~~~~~qr~Fia~~SHELRTPLt~I~~~lEll~~~~--~---~~----~~~~~~~i~rl~~li~  191 (355)
T PRK10755        121 EIEAVTSALNQLVSRLTSTLDNERLFTADVAHELRTPLAGVRLHLELLAKTH--H---ID----VAPLIARLDQMMHSVS  191 (355)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCC--C---CC----HHHHHHHHHHHHHHHH
T ss_conf             8999999999999999999999999999757774038999999999973757--5---31----9999999999999999


Q ss_pred             HHHHHHHHHCCCCCCCEEEEC-HHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCEEEECHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             999986643188520003317-9999999999999998737808999737988468988899999999999888871889
Q gi|254780413|r  643 DLLDISKIESGKMNLHFEPVS-LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS  721 (820)
Q Consensus       643 dlLd~srieaG~~~l~~~~vd-l~~lv~~~~~~~~~~a~~~~i~l~~~~~~~lp~v~~D~~~l~Qvl~NLl~NAik~t~~  721 (820)
T Consensus       192 ~LL~Lar~~~~~~~~~~~~~~ll~~li~~~~~~l~~~~~~~~~~l~~~~~~~~~~v~~D~~lL~~vl~NLi~NAikys~~  271 (355)
T PRK10755        192 QLLQLARAGQSFSSGNYQTVKLLEDVILPSYDELSTMLEQRQQTLLLPESAADITVQGDATLLRLLLRNLVENAHRYSPE  271 (355)
T ss_pred             HHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEEEECHHHHHHHHHHHHHHHHHHCCC
T ss_conf             99999858886434544213259999999999999999975995999658877189968999999999999989974899


Q ss_pred             CCEEEEEEEECCCCEEEEEEEECCCCCCHHHHHHHCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEEC-CC
Q ss_conf             78799999980499499999978897898886642377187347876667888606899999999619869999788-99
Q gi|254780413|r  722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP-AK  800 (820)
Q Consensus       722 gg~v~v~~~~~~~~~v~i~V~DtG~GI~~~~~~~iFepF~~~~~~~~~~~~GtGLGLai~k~iVe~hgG~i~v~S~p-G~  800 (820)
T Consensus       272 g~~I~I~l~-~-~~~~~i~V~D~G~GI~~e~~~~iFerFyR~d~----~~gGsGLGLaIvk~Iv~~HgG~I~l~s~~~gg  345 (355)
T PRK10755        272 GSNITIKLQ-E-DGGAVMAVEDEGPGIDESKCGELSKAFVRMDS----RYGGIGLGLSIVSRITQLHHGQFFLQNRQERS  345 (355)
T ss_pred             CCEEEEEEE-E-CCCEEEEEEECCCCCCHHHHHHHCCCCCCCCC----CCCCCCHHHHHHHHHHHHCCCEEEEEECCCCC
T ss_conf             976999999-7-79889999987999897999885588613899----99987589999999999919989999879898


Q ss_pred             CEEEEEEEC
Q ss_conf             539999963
Q gi|254780413|r  801 GTLIEIIFP  809 (820)
Q Consensus       801 Gt~f~v~lP  809 (820)
T Consensus       346 Gt~~~v~LP  354 (355)
T PRK10755        346 GTRAWVWLK  354 (355)
T ss_pred             EEEEEEEEC
T ss_conf             789999947