HHsearch alignment for GI: 254780413 and conserved domain: PRK11086
>PRK11086 sensory histidine kinase DcuS; Provisional.
Probab=100.00 E-value=0 Score=357.38 Aligned_cols=311 Identities=22% Similarity=0.241 Sum_probs=224.5
Q ss_pred HHHHHHHHHHHHCCHHEEECCCCEEEEEHHHHHHHHCCC--HHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 999999999742204307859983872156899884896--032078644334564562778999998860698402234
Q gi|254780413|r 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP--VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527 (820)
Q Consensus 450 ~~~~L~~ile~~~~gI~~~D~~G~i~~~N~a~~~l~G~~--~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (820)
T Consensus 219 l~~er~aiL~s~~eGVIavD~~g~I~l~N~~A~~ll~~~~~~~~~~g~~~~~~~~~~~-------l~~vl~~~~~~-~d~ 290 (541)
T PRK11086 219 LFEQRQAMLQSIKEGVIAVDDRGEVTLINDEAQRLFYKKGQEDDPLSTDVHSWSPVSR-------LKEVLRTGTPR-RDE 290 (541)
T ss_pred HHHHHHHHHHHHHCEEEEECCCCEEEEECHHHHHHHCCCCCCCCCCCCCHHHHCCCHH-------HHHHHHCCCCC-CEE
T ss_conf 9999999985300169997589879998499998743358874312551777275455-------99998448853-107
Q ss_pred EEEEECCCCCEEEEEEEEEECCCC-CEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
Q ss_conf 888763897289999998871788-7399998651444434576544668878999999999985234531748999999
Q gi|254780413|r 528 ITLGSTKEEKLLSLRIIIKKLPFS-SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606 (820)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~Dite~k~~e~el~~~~~~~e~~~~~k~~fla~vsHElrtPL~~I~g~ 606 (820)
T Consensus 291 e~~---~~~~~l~~~~~pi~~~g~~~G~V~~~rD~TE~~~L~~~L~~v--------~~~~e~Lra~sHE~~n~L~~I~Gl 359 (541)
T PRK11086 291 EIN---INGRLLLTNTVPVRVNGEIIGAISTFRDKTEVRQLAQRLDGV--------VNYADALRAQSHEFMNKLHVILGL 359 (541)
T ss_pred EEE---ECCEEEEEEEEEEEECCEEEEEEEEEECHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999---899899999777654890689999984427899999999999--------999999876116664057999888
Q ss_pred HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHHHHHCCEEE
Q ss_conf 99997312687788899999999999899999999999998664318852000331799999999999999987378089
Q gi|254780413|r 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 (820)
Q Consensus 607 ~~~l~~~~~~~~~~~~~~~~l~~i~~~~~~l~~li~dlLd~srieaG~~~l~~~~vdl~~lv~~~~~~~~~~a~~~~i~l 686 (820)
T Consensus 360 l~l~~~--------d~~~~~---i~~~~~~~~~~~~~l~~~i~----------~p~-la~~L----lgk~~~a~E~gi~L 413 (541)
T PRK11086 360 LHLKSY--------DQLEDY---ILKTANNYQEEIGSLLGKIK----------SPV-IAGFL----LGKISRARELGITL 413 (541)
T ss_pred HHHCHH--------HHHHHH---HHHHHHHHHHHHHHHHHHCC----------CHH-HHHHH----HHHHHHHHHCCCEE
T ss_conf 864308--------999999---99999999999999998611----------688-89999----98899999669859
Q ss_pred EEEECCCCCEEEECHH---HHHHHHHHHHHHHHHCCC--CCCEEEEEEEECCCCEEEEEEEECCCCCCHHHHHHHCCCCE
Q ss_conf 9973798846898889---999999999988887188--97879999998049949999997889789888664237718
Q gi|254780413|r 687 RTSFANNIPRILADLR---SVKQIALNILSNAIHFTP--SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFG 761 (820)
Q Consensus 687 ~~~~~~~lp~v~~D~~---~l~Qvl~NLl~NAik~t~--~gg~v~v~~~~~~~~~v~i~V~DtG~GI~~~~~~~iFepF~ 761 (820)
T Consensus 414 ~i~~~~~l~~~~-~~~~~~~l~tVlgNLidNAi~A~~~~~~g~V~v~l~~-~~~~l~i~V~D~G~GI~~e~~~~IFerg~ 491 (541)
T PRK11086 414 IISEDSQLPDSD-DEDQVHELITILGNLIENALEAVSNEEGGEISVSLHY-RHGWLHIEVSDDGPGIAPEEIEAIFDKGY 491 (541)
T ss_pred EEECCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEE-CCCEEEEEEEECCCCCCHHHHHHHCCCCC
T ss_conf 970677677888-6466657999999999999997316899679999998-89989999997798859779988717987
Q ss_pred EECCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEECCCCC
Q ss_conf 7347876667888606899999999619869999788995399999635777
Q gi|254780413|r 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813 (820)
Q Consensus 762 ~~~~~~~~~~~GtGLGLai~k~iVe~hgG~i~v~S~pG~Gt~f~v~lP~~~~ 813 (820)
T Consensus 492 StK------~~g~GLGLaIvk~iVe~~gG~I~veS~~g~GT~Fti~LP~~~~ 537 (541)
T PRK11086 492 STK------GSNRGVGLYLVKQSVENLGGSIAVESEPGIGTQFFVQIPWDGK 537 (541)
T ss_pred CCC------CCCCCCCHHHHHHHHHHCCCEEEEEECCCCCEEEEEEECCCCC
T ss_conf 418------9991103999999999859989999669993799999606876